RchiOBHm_Chr4g0446371

Domain of unknown function (DUF3067)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007081
Physical Location & Seq
Forward (+)
66565646 .. 66567850
2205 bp
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UTR
Exon/CDS
Intron
PRQ41389

Sequence Viewer

Length: 663 bp
ATGACGAGCATTATTTCAAGCCACCATTGTAATTGGTCATTTGGGATTCAAGAGAACGCTAACACAGGATTCAACAAAGTTCTGCTTCCTGGATATACTTCACATTTTCCTTCAAGAGGATTGGTTTTTTCCAATGGTAACTATCACATTCGTTATCAAACTGATCGGAGATGTAGGCCTATTTTCTCCAGTACGGTAGATGACATAAATCCAGATGACTCTGAAGATGAAAAGGATGCGAAGGAAAATTCCAAAGCTGAAGCTGGAGGGGGGAATAATGAAATGGTCAGAGAGAATCTTGAAAGACTTGTTGGTACAGATGACTCCAGCTTTAGTGGGATAGACCTGGCAACTCTTATTAGGAACAAGTATGGGAGGTCCTATGATGTTCAACTGATAAAGAAGGAGTTCCTGGGAAGAAACCTCTTGGCTATGAATGTGATGTGGAAGTACAGGGAGCAGAGATCCTTTCCACTGACTGAAGAAGAGTATCTATTGAGGCTTGATGATGTTGCAAACAACTTGAAGTGCTGGGGAGCTGTGTCACATATCAGAAACAGCCTAGCAACGGTGAAAGAGAGGCCTCGGATAGGAAAGGCTGTTAGCATTTTTATAGATATGGACGAGTCTGGAGGCCGTGCAAATGAATGGATTTACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3067

Protein Analysis

220

Amino Acids

25.12

Weight (kDa)

6.23

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3067 PF11267 115 - 218 2.6e-34 Domain of unknown function (DUF3067)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 459
AcsI RAATTY 1 cut(s) 247
AcuI CTGAAG 3 cut(s) 243, 279, 501
AfaI GTAC 3 cut(s) 193, 316, 452
AfiI CCNNNNNNNGG 3 cut(s) 116, 568, 590
AgsI TTSAA 7 cut(s) 18, 50, 73, 114, 302, 392, 526
AjnI CCWGG 3 cut(s) 88, 345, 411
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 4 cut(s) 257, 263, 330, 539
AluI AGCT 4 cut(s) 257, 263, 330, 539
AlwI GGATC 1 cut(s) 459
AoxI GGCC 3 cut(s) 176, 581, 634
ApoI RAATTY 1 cut(s) 247
Asp700I GAANNNNTTC 1 cut(s) 407
AspS9I GGNCC 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 583
AvaII GGWCC 1 cut(s) 378
BceAI ACGGC 1 cut(s) 621
BciT130I CCWGG 3 cut(s) 90, 347, 413
BfaI CTAG 1 cut(s) 563
Bme1390I CCNGG 3 cut(s) 90, 347, 413
Bme18I GGWCC 1 cut(s) 378
BmgT120I GGNCC 1 cut(s) 378
BmrFI CCNGG 3 cut(s) 90, 347, 413
BmsI GCATC 1 cut(s) 226
BpmI CTGGAG 4 cut(s) 172, 285, 310, 651
BsaJI CCNNGG 2 cut(s) 412, 584
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 568, 590
Bse1I ACTGG 1 cut(s) 189
BseBI CCWGG 3 cut(s) 90, 347, 413
BseDI CCNNGG 2 cut(s) 412, 584
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 3 cut(s) 116, 568, 590
BseNI ACTGG 1 cut(s) 189
BseYI CCCAGC 1 cut(s) 531
BshFI GGCC 3 cut(s) 178, 583, 636
BslI CCNNNNNNNGG 3 cut(s) 116, 568, 590
BsnI GGCC 3 cut(s) 178, 583, 636
Bsp143I GATC 2 cut(s) 163, 464
BspANI GGCC 3 cut(s) 178, 583, 636
BspPI GGATC 1 cut(s) 459
BsrI ACTGG 1 cut(s) 189
BssECI CCNNGG 2 cut(s) 412, 584
BssMI GATC 2 cut(s) 163, 464
Bst2UI CCWGG 3 cut(s) 90, 347, 413
Bst4CI ACNGT 2 cut(s) 196, 571
Bst6I CTCTTC 1 cut(s) 480
BstENI CCTNNNNNAGG 2 cut(s) 114, 588
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 2 cut(s) 166, 467
BstMBI GATC 2 cut(s) 163, 464
BstNI CCWGG 3 cut(s) 90, 347, 413
BstSCI CCNGG 3 cut(s) 88, 345, 411
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BsuRI GGCC 3 cut(s) 178, 583, 636
BtsCI GGATG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 473
Cfr13I GGNCC 1 cut(s) 378
Csp6I GTAC 3 cut(s) 192, 315, 451
CviQI GTAC 3 cut(s) 192, 315, 451
DpnI GATC 2 cut(s) 165, 466
DpnII GATC 2 cut(s) 163, 464
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco147I AGGCCT 2 cut(s) 178, 583
Eco47I GGWCC 1 cut(s) 378
Eco57I CTGAAG 3 cut(s) 243, 279, 501
EcoNI CCTNNNNNAGG 2 cut(s) 114, 588
EcoO109I RGGNCCY 1 cut(s) 378
EcoRII CCWGG 3 cut(s) 88, 345, 411
FaiI YATR 8 cut(s) 96, 206, 372, 384, 434, 549, 614, 620
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FokI GGATG 1 cut(s) 248
FspBI CTAG 1 cut(s) 563
GsaI CCCAGC 1 cut(s) 535
GsuI CTGGAG 4 cut(s) 172, 285, 310, 651
HaeIII GGCC 3 cut(s) 178, 583, 636
HinfI GANTC 6 cut(s) 46, 69, 218, 295, 323, 626
HphI GGTGA 1 cut(s) 583
Hpy188I TCNGA 5 cut(s) 168, 223, 290, 554, 588
Hpy188III TCNNGA 5 cut(s) 50, 114, 212, 299, 630
HpyAV CCTTC 3 cut(s) 120, 235, 397
HpyCH4III ACNGT 2 cut(s) 196, 571
HpyCH4V TGCA 2 cut(s) 515, 641
Kzo9I GATC 2 cut(s) 163, 464
LmnI GCTCC 2 cut(s) 457, 536
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 563
MaeIII GTNAC 2 cut(s) 137, 543
MalI GATC 2 cut(s) 165, 466
MboI GATC 2 cut(s) 163, 464
MboII GAAGA 4 cut(s) 236, 429, 494, 497
MflI RGATCY 1 cut(s) 464
MluCI AATT 2 cut(s) 31, 247
MlyI GAGTC 3 cut(s) 212, 317, 635
MnlI CCTC 8 cut(s) 110, 260, 369, 434, 492, 573, 594, 626
MroXI GAANNNNTTC 1 cut(s) 407
MspR9I CCNGG 3 cut(s) 90, 347, 413
MvaI CCWGG 3 cut(s) 90, 347, 413
NdeII GATC 2 cut(s) 163, 464
NmuCI GTSAC 1 cut(s) 543
PceI AGGCCT 2 cut(s) 178, 583
PdmI GAANNNNTTC 1 cut(s) 407
PfeI GAWTC 3 cut(s) 46, 69, 295
PfoI TCCNGGA 1 cut(s) 88
PleI GAGTC 3 cut(s) 212, 317, 634
PpsI GAGTC 3 cut(s) 212, 317, 634
PpuMI RGGWCCY 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 378
Psp6I CCWGG 3 cut(s) 88, 345, 411
PspFI CCCAGC 1 cut(s) 531
PspGI CCWGG 3 cut(s) 88, 345, 411
PspPI GGNCC 1 cut(s) 378
PspPPI RGGWCCY 1 cut(s) 378
PsuI RGATCY 1 cut(s) 464
RsaI GTAC 3 cut(s) 193, 316, 452
RsaNI GTAC 3 cut(s) 192, 315, 451
Sau3AI GATC 2 cut(s) 163, 464
Sau96I GGNCC 1 cut(s) 378
SchI GAGTC 3 cut(s) 212, 317, 635
ScrFI CCNGG 3 cut(s) 90, 347, 413
SetI ASST 7 cut(s) 259, 265, 332, 348, 380, 426, 541
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 1 cut(s) 378
Sse9I AATT 2 cut(s) 31, 247
SseBI AGGCCT 2 cut(s) 178, 583
SspMI CTAG 1 cut(s) 563
StuI AGGCCT 2 cut(s) 178, 583
StyD4I CCNGG 3 cut(s) 88, 345, 411
TaaI ACNGT 2 cut(s) 196, 571
TasI AATT 2 cut(s) 31, 247
TatI WGTACW 1 cut(s) 450
TfiI GAWTC 3 cut(s) 46, 69, 295
TscAI CASTG 1 cut(s) 480
TseFI GTSAC 1 cut(s) 543
Tsp45I GTSAC 1 cut(s) 543
TspDTI ATGAA 4 cut(s) 243, 294, 449, 660
TspRI CASTG 1 cut(s) 480
VpaK11BI GGWCC 1 cut(s) 378
XagI CCTNNNNNAGG 2 cut(s) 114, 588
XapI RAATTY 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 407
XspI CTAG 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.