FvH4_4g36660

Domain of unknown function (DUF3067)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007081
Physical Location & Seq
Forward (+)
33488369 .. 33490471
2103 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36660.t3

Sequence Viewer

Length: 504 bp
ATGACGAGCATTATTTCAAGCCACCATTGTAATTGGTCATTTGGGATTCAAGAGAACCCTCACACAGGATTCAACAAAGTTCTGCTACCTGGATGCACTTCACATTTTCCTTCAAGAGGATTGGTCTTTTCCAATGGTAACTATCACATTCGTTATCAAACAGATCGAAGAAGTAGGCCTATATTTTCTAGTACAGTGGATGGTGTAAATCCAGATGACTCGGAAGATCAAAATGACAAGGAGGAATCTTCAAAATCTGAAACTGGAGGGGGAAATAATGAAATGGTCAGAGATAATCTGGAAAGACTTGTTGGTACAGATGACTCCAGCTTTAGTGGGATAGACCTGGCAACTCTTATTAGGAACAAGTATGGAAGGTCATATGATGTTCAACTGATCAAGAAGGAGTTCCTTGGAAGAAACCTGCTGGCTATGAATGTGATGTGGAAGTACAGGGAGCAGATCCTTTCCACTGACAGAAGAAGAGTATCTAATGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3067

Protein Analysis

168

Amino Acids

19.01

Weight (kDa)

6.51

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3067 PF11267 115 - 218 1.3e-34 Domain of unknown function (DUF3067)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 432
AclWI GGATC 1 cut(s) 457
AfaI GTAC 3 cut(s) 193, 316, 452
AfiI CCNNNNNNNGG 2 cut(s) 65, 116
AgsI TTSAA 6 cut(s) 18, 50, 73, 114, 252, 392
AjnI CCWGG 2 cut(s) 88, 345
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 1 cut(s) 330
AluI AGCT 1 cut(s) 330
AlwI GGATC 1 cut(s) 457
AoxI GGCC 1 cut(s) 176
Asp700I GAANNNNTTC 1 cut(s) 407
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 2 cut(s) 90, 347
BclI TGATCA 1 cut(s) 396
BfaI CTAG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 432
Bme1390I CCNGG 2 cut(s) 90, 347
BmrFI CCNGG 2 cut(s) 90, 347
BmsI GCATC 1 cut(s) 83
BpmI CTGGAG 2 cut(s) 285, 310
BsaJI CCNNGG 1 cut(s) 412
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 116
Bse1I ACTGG 1 cut(s) 268
BseBI CCWGG 2 cut(s) 90, 347
BseDI CCNNGG 1 cut(s) 412
BseGI GGATG 2 cut(s) 98, 205
BseLI CCNNNNNNNGG 2 cut(s) 65, 116
BseNI ACTGG 1 cut(s) 268
BshFI GGCC 1 cut(s) 178
BslI CCNNNNNNNGG 2 cut(s) 65, 116
BsnI GGCC 1 cut(s) 178
Bsp143I GATC 4 cut(s) 163, 226, 396, 462
BspANI GGCC 1 cut(s) 178
BspMI ACCTGC 1 cut(s) 432
BspPI GGATC 1 cut(s) 457
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 412
BssMI GATC 4 cut(s) 163, 226, 396, 462
BssT1I CCWWGG 1 cut(s) 412
Bst2UI CCWGG 2 cut(s) 90, 347
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 478
BstC8I GCNNGC 1 cut(s) 429
BstENI CCTNNNNNAGG 2 cut(s) 63, 114
BstF5I GGATG 2 cut(s) 98, 205
BstKTI GATC 4 cut(s) 166, 229, 399, 465
BstMBI GATC 4 cut(s) 163, 226, 396, 462
BstNI CCWGG 2 cut(s) 90, 347
BstSCI CCNGG 2 cut(s) 88, 345
BstX2I RGATCY 1 cut(s) 462
BstYI RGATCY 1 cut(s) 462
BsuRI GGCC 1 cut(s) 178
BtsCI GGATG 2 cut(s) 98, 205
BtsIMutI CAGTG 2 cut(s) 201, 471
BveI ACCTGC 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 429
Csp6I GTAC 3 cut(s) 192, 315, 451
CviJI RGCY 5 cut(s) 21, 178, 330, 431, 500
CviKI_1 RGCY 5 cut(s) 21, 178, 330, 431, 500
CviQI GTAC 3 cut(s) 192, 315, 451
DpnI GATC 4 cut(s) 165, 228, 398, 464
DpnII GATC 4 cut(s) 163, 226, 396, 462
Eam1104I CTCTTC 1 cut(s) 478
EarI CTCTTC 1 cut(s) 478
Eco130I CCWWGG 1 cut(s) 412
Eco147I AGGCCT 1 cut(s) 178
EcoNI CCTNNNNNAGG 2 cut(s) 63, 114
EcoRII CCWGG 2 cut(s) 88, 345
EcoT14I CCWWGG 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 412
FaiI YATR 5 cut(s) 182, 372, 382, 384, 434
FauNDI CATATG 1 cut(s) 382
FbaI TGATCA 1 cut(s) 396
FokI GGATG 2 cut(s) 105, 212
FspBI CTAG 1 cut(s) 189
GsuI CTGGAG 2 cut(s) 285, 310
HaeIII GGCC 1 cut(s) 178
HinfI GANTC 5 cut(s) 46, 69, 218, 245, 323
Hpy188I TCNGA 3 cut(s) 223, 259, 290
Hpy188III TCNNGA 5 cut(s) 50, 114, 212, 299, 400
HpyAV CCTTC 3 cut(s) 120, 369, 397
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 396
Kzo9I GATC 4 cut(s) 163, 226, 396, 462
LmnI GCTCC 1 cut(s) 457
LweI GCATC 1 cut(s) 83
MaeI CTAG 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 137
MalI GATC 4 cut(s) 165, 228, 398, 464
MboI GATC 4 cut(s) 163, 226, 396, 462
MboII GAAGA 6 cut(s) 180, 236, 240, 429, 492, 495
MflI RGATCY 1 cut(s) 462
MluCI AATT 1 cut(s) 31
MlyI GAGTC 2 cut(s) 212, 317
MnlI CCTC 5 cut(s) 69, 110, 235, 260, 490
MroXI GAANNNNTTC 1 cut(s) 407
MspR9I CCNGG 2 cut(s) 90, 347
MvaI CCWGG 2 cut(s) 90, 347
NdeI CATATG 1 cut(s) 382
NdeII GATC 4 cut(s) 163, 226, 396, 462
PceI AGGCCT 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 407
PfeI GAWTC 3 cut(s) 46, 69, 245
PleI GAGTC 2 cut(s) 212, 317
PpsI GAGTC 2 cut(s) 212, 317
Psp6I CCWGG 2 cut(s) 88, 345
PspGI CCWGG 2 cut(s) 88, 345
PsuI RGATCY 1 cut(s) 462
RsaI GTAC 3 cut(s) 193, 316, 452
RsaNI GTAC 3 cut(s) 192, 315, 451
Sau3AI GATC 4 cut(s) 163, 226, 396, 462
SchI GAGTC 2 cut(s) 212, 317
ScrFI CCNGG 2 cut(s) 90, 347
SetI ASST 5 cut(s) 91, 332, 348, 380, 426
SfaNI GCATC 1 cut(s) 83
Sse9I AATT 1 cut(s) 31
SseBI AGGCCT 1 cut(s) 178
SspMI CTAG 1 cut(s) 189
StuI AGGCCT 1 cut(s) 178
StyD4I CCNGG 2 cut(s) 88, 345
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 166
TasI AATT 1 cut(s) 31
TatI WGTACW 2 cut(s) 191, 450
TfiI GAWTC 3 cut(s) 46, 69, 245
TscAI CASTG 2 cut(s) 201, 478
TspDTI ATGAA 2 cut(s) 294, 449
TspRI CASTG 2 cut(s) 201, 478
XagI CCTNNNNNAGG 2 cut(s) 63, 114
XmnI GAANNNNTTC 1 cut(s) 407
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.