Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8420189.1

Orthogroup ID

OG0007081

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1406

Gene Structure 1406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8420189.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 742 bp

ccctcaccgccgagcagaagtcacgcatagaattccagaagctgctggccaaagcgaaacgcaaccgcactatctgctccggcagagtctccgattccaaggcccaaggtgaaggagtgaaattggaggagctattggcggaggacacgtggctgacggcgttgccttctgagtttaagaagccgtacgccgtcaacctcagcaagttcgttgagagtgagatctccggcgccggcggtggtggtgttccgatatatccgccgagtcacttgatcttcaatgctctgaactccaccccttttgatcgggtcaaggcagtcattttgggccaggacccgtatcatgggccgggtcaggctatgggtctgtccttctctgttccacaaggagtgaaggtcccatcgagcctggttaatatattcaaggagcttcacaaagatgttggctgttcaattccatctcatggaaatctagaaaaatgggctgttcagggtgttctgttgctcaatgctgttctcaccgttagggatcatcaggctaactctcatgcaaagaaaggatgggaacaatttacggatgctgttatccaaacgatttcaaaaaagaaggaaggtgttgttttcctcctgtggggaaactccgcacagcagaaatccaggttagttgatgtgtcgaagcatcacattcttagggcggcacatccttccggtttatctgcatacaggggcttctttggctgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004844 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097506 GO:0097510 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 ko05340 map03410 map05340

Pfam Domains

Protein Families

UDG

Protein Analysis

246

Amino Acids

26.78

Weight (kDa)

9.47

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19900 AT3G19900
fragaria_vesca	FvH4_4g36660 FvH4_4g36660 FvH4_4g36660
malus_domestica	MD16G1006000.v1.1
prunus_persica	Prupe.1G344600_v2.0.a1
pyrus_communis	pycom16g00580
rosa_chinensis	RchiOBHm_Chr4g0446361 RchiOBHm_Chr4g0446371
rosa_laevigata	RLG00000005668
rosa_multiflora	Rmu_co8384533.1_g000001 Rmu_co8420189.1_g000001 Rmu_sc0008360.1_g000001 Rmu_sc0010778.1_g000002
rosa_roxburghii	Rroxscaffold_5G00386800 Rroxscaffold_5G00386810
rosa_rugosa	Rorug04G0370700 Rorug04G0370800
rosa_samantha	Rh4AG432300 Rh4BG441500 Rh4CG458800 Rh4DG440200
rosa_wichuraiana	Rw4G036910 Rw4G036920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AccB7I	CCANNNNNTGG	1 cut(s)	463
AciI	CCGC	7 cut(s)	8, 66, 139, 236, 259, 641, 694
AclWI	GGATC	1 cut(s)	536
AcoI	YGGCCR	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	31
AcvI	CACGTG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	230
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	3 cut(s)	343, 463, 630
AflIII	ACRYGT	1 cut(s)	146
AgsI	TTSAA	4 cut(s)	279, 423, 452, 599
AjnI	CCWGG	3 cut(s)	329, 407, 655
AluBI	AGCT	3 cut(s)	42, 132, 429
AluI	AGCT	3 cut(s)	42, 132, 429
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	536
AlwNI	CAGNNNCTG	1 cut(s)	42
AoxI	GGCC	4 cut(s)	47, 101, 327, 346
ApeKI	GCWGC	2 cut(s)	42, 737
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	5 cut(s)	102, 327, 333, 346, 396
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	121, 510
AvaII	GGWCC	2 cut(s)	333, 396
BalI	TGGCCA	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	229
BbrPI	CACGTG	1 cut(s)	149
BbvCI	CCTCAGC	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	29, 724
BccI	CCATC	3 cut(s)	408, 465, 554
BceAI	ACGGC	3 cut(s)	168, 173, 175
BciT130I	CCWGG	3 cut(s)	331, 409, 657
BcnI	CCSGG	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	472
BfmI	CTRYAG	1 cut(s)	738
BfoI	RGCGCY	1 cut(s)	233
BglII	AGATCT	1 cut(s)	221
BisI	GCNGC	3 cut(s)	43, 695, 738
BlsI	GCNGC	3 cut(s)	44, 696, 739
Bme1390I	CCNGG	4 cut(s)	331, 350, 409, 657
Bme18I	GGWCC	2 cut(s)	333, 396
BmgT120I	GGNCC	5 cut(s)	102, 327, 333, 346, 396
BmiI	GGNNCC	3 cut(s)	231, 335, 398
BmrFI	CCNGG	4 cut(s)	331, 350, 409, 657
BmsI	GCATC	2 cut(s)	567, 687
Bpu10I	CCTNAGC	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	350
BsaAI	YACGTR	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	98, 105
BsaWI	WCCGGW	1 cut(s)	706
BsaXI	ACNNNNNCTCC	4 cut(s)	133, 163, 380, 410
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 463, 630
Bse118I	RCCGGY	1 cut(s)	232
BseBI	CCWGG	3 cut(s)	331, 409, 657
BseDI	CCNNGG	2 cut(s)	98, 105
BseGI	GGATG	3 cut(s)	565, 582, 699
BseLI	CCNNNNNNNGG	3 cut(s)	343, 463, 630
BseMII	CTCAG	2 cut(s)	161, 213
BseRI	GAGGAG	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	29, 724
BshFI	GGCC	4 cut(s)	49, 103, 329, 348
BshNI	GGYRCC	1 cut(s)	229
BsiSI	CCGG	5 cut(s)	80, 227, 233, 349, 707
BsiWI	CGTACG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	3 cut(s)	343, 463, 630
BsmAI	GTCTC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	4 cut(s)	49, 103, 329, 348
Bsp143I	GATC	4 cut(s)	221, 272, 303, 528
BspACI	CCGC	7 cut(s)	8, 66, 139, 236, 259, 641, 694
BspANI	GGCC	4 cut(s)	49, 103, 329, 348
BspCNI	CTCAG	2 cut(s)	162, 212
BspLI	GGNNCC	3 cut(s)	231, 335, 398
BspMAI	CTGCAG	1 cut(s)	742
BspPI	GGATC	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	98, 105
BssMI	GATC	4 cut(s)	221, 272, 303, 528
BssNI	GRCGYC	1 cut(s)	230
BssT1I	CCWWGG	2 cut(s)	98, 105
Bst2UI	CCWGG	3 cut(s)	331, 409, 657
Bst4CI	ACNGT	1 cut(s)	522
BstACI	GRCGYC	1 cut(s)	230
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	47, 234
BstDEI	CTNAG	3 cut(s)	170, 199, 688
BstF5I	GGATG	3 cut(s)	565, 582, 699
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	4 cut(s)	224, 275, 306, 531
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	4 cut(s)	221, 272, 303, 528
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 734
BstNI	CCWGG	3 cut(s)	331, 409, 657
BstSCI	CCNGG	4 cut(s)	329, 348, 407, 655
BstSFI	CTRYAG	1 cut(s)	738
BstV1I	GCAGC	2 cut(s)	29, 724
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BsuRI	GGCC	4 cut(s)	49, 103, 329, 348
BtsCI	GGATG	3 cut(s)	565, 582, 699
Cac8I	GCNNGC	2 cut(s)	47, 234
CaiI	CAGNNNCTG	1 cut(s)	42
CfoI	GCGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	5 cut(s)	102, 327, 333, 346, 396
Csp6I	GTAC	1 cut(s)	186
CspCI	CAANNNNNGTGG	2 cut(s)	282, 317
CviAII	CATG	3 cut(s)	343, 463, 547
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	3 cut(s)	170, 199, 688
DinI	GGCGCC	1 cut(s)	231
DpnI	GATC	4 cut(s)	223, 274, 305, 530
DpnII	GATC	4 cut(s)	221, 272, 303, 528
EaeI	YGGCCR	1 cut(s)	47
EciI	GGCGGA	2 cut(s)	154, 248
Eco130I	CCWWGG	2 cut(s)	98, 105
Eco47I	GGWCC	2 cut(s)	333, 396
Eco72I	CACGTG	1 cut(s)	149
EcoO109I	RGGNCCY	2 cut(s)	333, 396
EcoRI	GAATTC	1 cut(s)	31
EcoRII	CCWGG	3 cut(s)	329, 407, 655
EcoT14I	CCWWGG	2 cut(s)	98, 105
EgeI	GGCGCC	1 cut(s)	231
EheI	GGCGCC	1 cut(s)	231
ErhI	CCWWGG	2 cut(s)	98, 105
FaeI	CATG	3 cut(s)	346, 466, 550
FaiI	YATR	8 cut(s)	28, 255, 344, 361, 418, 464, 548, 720
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	3 cut(s)	342, 462, 546
Fnu4HI	GCNGC	3 cut(s)	43, 695, 738
FokI	GGATG	3 cut(s)	572, 589, 686
Fsp4HI	GCNGC	3 cut(s)	43, 695, 738
FspBI	CTAG	1 cut(s)	472
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	3 cut(s)	43, 695, 738
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	4 cut(s)	49, 103, 329, 348
HapII	CCGG	5 cut(s)	80, 227, 233, 349, 707
HhaI	GCGC	1 cut(s)	232
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	3 cut(s)	346, 466, 550
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	3 cut(s)	86, 94, 264
HpaII	CCGG	5 cut(s)	80, 227, 233, 349, 707
HphI	GGTGA	2 cut(s)	121, 510
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	4 cut(s)	93, 171, 251, 287
Hpy188III	TCNNGA	2 cut(s)	36, 472
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	7 cut(s)	106, 176, 381, 387, 600, 604, 713
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	3 cut(s)	550, 718, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 734
HpyF3I	CTNAG	3 cut(s)	170, 199, 688
HpySE526I	ACGT	1 cut(s)	148
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	3 cut(s)	346, 466, 550
HspAI	GCGC	1 cut(s)	230
KasI	GGCGCC	1 cut(s)	229
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Kzo9I	GATC	4 cut(s)	221, 272, 303, 528
LmnI	GCTCC	3 cut(s)	82, 129, 426
Lsp1109I	GCAGC	2 cut(s)	29, 724
LweI	GCATC	2 cut(s)	567, 687
MaeI	CTAG	1 cut(s)	472
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	2 cut(s)	20, 265
MalI	GATC	4 cut(s)	223, 274, 305, 530
MboI	GATC	4 cut(s)	221, 272, 303, 528
MboII	GAAGA	1 cut(s)	267
MflI	RGATCY	1 cut(s)	221
MlsI	TGGCCA	1 cut(s)	49
MluCI	AATT	4 cut(s)	31, 121, 452, 568
MluNI	TGGCCA	1 cut(s)	49
Mly113I	GGCGCC	1 cut(s)	230
MlyI	GAGTC	2 cut(s)	95, 273
MnlI	CCTC	5 cut(s)	13, 120, 135, 208, 634
Mox20I	TGGCCA	1 cut(s)	49
MreI	CGCCGGCG	1 cut(s)	232
MroNI	GCCGGC	1 cut(s)	232
MscI	TGGCCA	1 cut(s)	49
MseI	TTAA	2 cut(s)	176, 413
MslI	CAYNNNNRTG	1 cut(s)	437
Msp20I	TGGCCA	1 cut(s)	49
MspI	CCGG	5 cut(s)	80, 227, 233, 349, 707
MspR9I	CCNGG	4 cut(s)	331, 350, 409, 657
MvaI	CCWGG	3 cut(s)	331, 409, 657
MwoI	GCNNNNNNNGC	2 cut(s)	74, 734
NaeI	GCCGGC	1 cut(s)	234
NarI	GGCGCC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	350
NdeII	GATC	4 cut(s)	221, 272, 303, 528
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	3 cut(s)	346, 466, 550
NlaIV	GGNNCC	3 cut(s)	231, 335, 398
NmeAIII	GCCGAG	2 cut(s)	36, 287
NmuCI	GTSAC	2 cut(s)	20, 265
PdiI	GCCGGC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	94
Pfl23II	CGTACG	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	463
PkrI	GCNGC	3 cut(s)	44, 696, 739
PleI	GAGTC	2 cut(s)	94, 272
PluTI	GGCGCC	1 cut(s)	233
PmaCI	CACGTG	1 cut(s)	149
PmlI	CACGTG	1 cut(s)	149
PpsI	GAGTC	2 cut(s)	94, 272
Ppu21I	YACGTR	1 cut(s)	149
PpuMI	RGGWCCY	2 cut(s)	333, 396
Psp5II	RGGWCCY	2 cut(s)	333, 396
Psp6I	CCWGG	3 cut(s)	329, 407, 655
PspCI	CACGTG	1 cut(s)	149
PspGI	CCWGG	3 cut(s)	329, 407, 655
PspLI	CGTACG	1 cut(s)	185
PspN4I	GGNNCC	3 cut(s)	231, 335, 398
PspPI	GGNCC	5 cut(s)	102, 327, 333, 346, 396
PspPPI	RGGWCCY	2 cut(s)	333, 396
PstI	CTGCAG	1 cut(s)	742
PstNI	CAGNNNCTG	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	221
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
RseI	CAYNNNNRTG	1 cut(s)	437
SaqAI	TTAA	2 cut(s)	176, 413
SatI	GCNGC	3 cut(s)	43, 695, 738
Sau3AI	GATC	4 cut(s)	221, 272, 303, 528
Sau96I	GGNCC	5 cut(s)	102, 327, 333, 346, 396
SchI	GAGTC	2 cut(s)	95, 273
ScrFI	CCNGG	4 cut(s)	331, 350, 409, 657
SetI	ASST	9 cut(s)	44, 111, 134, 151, 200, 398, 431, 615, 661
SfaNI	GCATC	2 cut(s)	567, 687
SfcI	CTRYAG	1 cut(s)	738
SfoI	GGCGCC	1 cut(s)	231
SgrAI	CRCCGGYG	1 cut(s)	232
SinI	GGWCC	2 cut(s)	333, 396
SmiMI	CAYNNNNRTG	1 cut(s)	437
Sse9I	AATT	4 cut(s)	31, 121, 452, 568
SsiI	CCGC	7 cut(s)	8, 66, 139, 236, 259, 641, 694
SspDI	GGCGCC	1 cut(s)	229
SspMI	CTAG	1 cut(s)	472
StyD4I	CCNGG	4 cut(s)	329, 348, 407, 655
StyI	CCWWGG	2 cut(s)	98, 105
TaaI	ACNGT	1 cut(s)	522
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	2 cut(s)	403, 673
TasI	AATT	4 cut(s)	31, 121, 452, 568
TauI	GCSGC	1 cut(s)	697
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	2 cut(s)	176, 413
Tru9I	TTAA	2 cut(s)	176, 413
TseFI	GTSAC	2 cut(s)	20, 265
TseI	GCWGC	2 cut(s)	42, 737
Tsp45I	GTSAC	2 cut(s)	20, 265
TspGWI	ACGGA	1 cut(s)	589
Van91I	CCANNNNNTGG	1 cut(s)	463
VpaK11BI	GGWCC	2 cut(s)	333, 396
XapI	RAATTY	1 cut(s)	31
XbaI	TCTAGA	1 cut(s)	471
XspI	CTAG	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.