Rw4G036910

Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
63706608 .. 63708554
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G036910.1

Sequence Viewer

Length: 1101 bp
ATGACCTTCGCCGTTTCCGGTTTCGGTAATTTTCCCGCCAATCAGATACGAGCTTTGGCGCCAATTCATAAAGCAGCCTATGATCATATCATTAGGGTAAGAGGCATTCCTTCGCCGTCGTTAATCCCAAGGGAGCAGCAATGGGCTCCAAAGCTGCCACCAAAAACAAAACCCTACTGGATATCTTCCAACCCACGACCCGATCCGCCAAACGCTTCAAAACCGATTCTTCCAGCCCCAAATCCGATGACGCCATCACCGAGCCTCTCTTCTTCTTCTTCTTCTCCGTCAGCCCTCACCGCCGAGCAGAAGTCACGCATAGAATTCCACAAGCTGCTGGCCAAAGCGAAACGCAACCGCACTATCTGCTCCGGCAGAGTCTCCGATTCCAAGGCCAAAGGTGAAGGAGTGAAATTGGAGGAGCTATTGGCGGAGGACACGTGGCTGACGGCGTTGCCTTCTGAGTTTAAGAAGCCCTACGCCGTCAACCTCAGCAAGTTCGTTGAGAGTGAGATCTCCGGCGCCGGCGGTGGTGGTGTTCCGATATATCCGCCGAGTCACTTGATCTTCAATGCTCTGAACTCCACCCCTTTTGATCGGGTCAAGGCTGTCATTTTGGGCCAGGACCCGTATCATGGGCCGGGTCAGGCTATGGGTCTGTCCTTCTCTGTTCCACAAGGAGTGAAGGTCCCATCGAGCCTGGTTAATATATTCAAGGAGCTTCACAAAGATGTCGGCTGTTCAATTCCATCTCATGGAAATCTAGAAAAATGGGCTGTTCAGGGTGTTCTGTTGCTCAATGCTGTTCTCACCGTTAGGGATCATCAGGCTAACTCTCATGCAAAGAAAGGATGGGAACAATTTACGGATGCTGTTATCCAAACGATTTCAAAAAAGAAGGAAGGTGTTGTTTTCCTCCTGTGGGGAAACTCCGCACAGCAGAAATCCAGGTTAGTTGATGTGTCGAAGCATCACATTCTTCGAGCGGCACATCCTTCCGGTTTATCTGCATACAGGGGCTTCTTTGGCTGCAGGCATTTTTCTCGCACGAACCAGCTTCTCAAGGAGATGGGTATTCCCCCGATCGATTGGCAACTTTGA

Protein Analysis

366

Amino Acids

39.97

Weight (kDa)

9.86

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDG PF03167 200 - 355 2e-15 Uracil DNA glycosylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 58, 521
AccB7I CCANNNNNTGG 1 cut(s) 755
AccBSI CCGCTC 1 cut(s) 986
AciI CCGC 9 cut(s) 36, 206, 300, 358, 431, 528, 551, 933, 986
AclWI GGATC 2 cut(s) 197, 828
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 1 cut(s) 323
AcvI CACGTG 1 cut(s) 441
AcyI GRCGYC 3 cut(s) 59, 251, 522
AfiI CCNNNNNNNGG 3 cut(s) 635, 755, 922
AflIII ACRYGT 1 cut(s) 438
AgsI TTSAA 5 cut(s) 219, 571, 715, 744, 891
AjnI CCWGG 3 cut(s) 621, 699, 947
AluBI AGCT 6 cut(s) 53, 154, 334, 424, 721, 1057
AluI AGCT 6 cut(s) 53, 154, 334, 424, 721, 1057
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 2 cut(s) 197, 828
AoxI GGCC 4 cut(s) 339, 393, 619, 638
ApeKI GCWGC 5 cut(s) 74, 136, 154, 334, 1029
ApoI RAATTY 1 cut(s) 323
AspLEI GCGC 2 cut(s) 61, 524
AspS9I GGNCC 4 cut(s) 619, 625, 638, 688
AsuC2I CCSGG 1 cut(s) 642
AsuHPI GGTGA 4 cut(s) 249, 289, 413, 802
AvaII GGWCC 2 cut(s) 625, 688
BalI TGGCCA 1 cut(s) 341
BanI GGYRCC 2 cut(s) 58, 521
BanII GRGCYC 1 cut(s) 148
BbrPI CACGTG 1 cut(s) 441
BbvCI CCTCAGC 1 cut(s) 491
BbvI GCAGC 5 cut(s) 86, 141, 148, 321, 1016
BccI CCATC 5 cut(s) 262, 700, 757, 846, 1063
BceAI ACGGC 3 cut(s) 100, 465, 467
BcgI CGANNNNNNTGC 2 cut(s) 1025, 1059
BciT130I CCWGG 3 cut(s) 623, 701, 949
BclI TGATCA 1 cut(s) 82
BcnI CCSGG 1 cut(s) 642
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 1 cut(s) 764
BfmI CTRYAG 1 cut(s) 1030
BfoI RGCGCY 2 cut(s) 62, 525
BglII AGATCT 1 cut(s) 513
BisI GCNGC 6 cut(s) 75, 137, 155, 335, 987, 1030
BlsI GCNGC 6 cut(s) 76, 138, 156, 336, 988, 1031
Bme1390I CCNGG 4 cut(s) 623, 642, 701, 949
Bme18I GGWCC 2 cut(s) 625, 688
BmgT120I GGNCC 4 cut(s) 619, 625, 638, 688
BmiI GGNNCC 5 cut(s) 60, 147, 523, 627, 690
BmrFI CCNGG 4 cut(s) 623, 642, 701, 949
BmsI GCATC 2 cut(s) 859, 979
Bpu10I CCTNAGC 1 cut(s) 491
BpuEI CTTGAG 1 cut(s) 1046
BpuMI CCSGG 1 cut(s) 642
Bsa29I ATCGAT 1 cut(s) 1086
BsaAI YACGTR 1 cut(s) 441
BsaHI GRCGYC 3 cut(s) 59, 251, 522
BsaJI CCNNGG 2 cut(s) 128, 390
BsaWI WCCGGW 2 cut(s) 17, 998
BsaXI ACNNNNNCTCC 4 cut(s) 425, 455, 672, 702
Bsc4I CCNNNNNNNGG 3 cut(s) 635, 755, 922
Bse118I RCCGGY 1 cut(s) 524
Bse1I ACTGG 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 146
BseBI CCWGG 3 cut(s) 623, 701, 949
BseCI ATCGAT 1 cut(s) 1086
BseDI CCNNGG 2 cut(s) 128, 390
BseGI GGATG 3 cut(s) 857, 874, 991
BseLI CCNNNNNNNGG 3 cut(s) 635, 755, 922
BseMI GCAATG 1 cut(s) 146
BseMII CTCAG 2 cut(s) 453, 505
BseNI ACTGG 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 5 cut(s) 86, 141, 148, 321, 1016
Bsh1285I CGRYCG 1 cut(s) 1086
BshFI GGCC 4 cut(s) 341, 395, 621, 640
BshNI GGYRCC 2 cut(s) 58, 521
BshVI ATCGAT 1 cut(s) 1086
BsiEI CGRYCG 1 cut(s) 1086
BsiSI CCGG 6 cut(s) 18, 372, 519, 525, 641, 999
BslFI GGGAC 1 cut(s) 674
BslI CCNNNNNNNGG 3 cut(s) 635, 755, 922
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 674
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 4 cut(s) 341, 395, 621, 640
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 7 cut(s) 82, 202, 513, 564, 595, 820, 1083
BspACI CCGC 9 cut(s) 36, 206, 300, 358, 431, 528, 551, 933, 986
BspANI GGCC 4 cut(s) 341, 395, 621, 640
BspCNI CTCAG 2 cut(s) 454, 504
BspDI ATCGAT 1 cut(s) 1086
BspLI GGNNCC 5 cut(s) 60, 147, 523, 627, 690
BspMAI CTGCAG 1 cut(s) 1034
BspPI GGATC 2 cut(s) 197, 828
BspT107I GGYRCC 2 cut(s) 58, 521
BsrBI CCGCTC 1 cut(s) 986
BsrDI GCAATG 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 524
BsrI ACTGG 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 524
BssECI CCNNGG 2 cut(s) 128, 390
BssMI GATC 7 cut(s) 82, 202, 513, 564, 595, 820, 1083
BssNI GRCGYC 3 cut(s) 59, 251, 522
BssT1I CCWWGG 2 cut(s) 128, 390
Bst2UI CCWGG 3 cut(s) 623, 701, 949
Bst4CI ACNGT 1 cut(s) 814
Bst6I CTCTTC 1 cut(s) 274
BstACI GRCGYC 3 cut(s) 59, 251, 522
BstAPI GCANNNNNTGC 1 cut(s) 366
BstBAI YACGTR 1 cut(s) 441
BstC8I GCNNGC 3 cut(s) 339, 526, 1034
BstDEI CTNAG 2 cut(s) 462, 491
BstF5I GGATG 3 cut(s) 857, 874, 991
BstH2I RGCGCY 2 cut(s) 62, 525
BstHHI GCGC 2 cut(s) 61, 524
BstKTI GATC 7 cut(s) 85, 205, 516, 567, 598, 823, 1086
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 7 cut(s) 82, 202, 513, 564, 595, 820, 1083
BstMCI CGRYCG 1 cut(s) 1086
BstMWI GCNNNNNNNGC 3 cut(s) 299, 366, 1026
BstNI CCWGG 3 cut(s) 623, 701, 949
BstSCI CCNGG 4 cut(s) 621, 640, 699, 947
BstSFI CTRYAG 1 cut(s) 1030
BstV1I GCAGC 5 cut(s) 86, 141, 148, 321, 1016
BstX2I RGATCY 1 cut(s) 513
BstYI RGATCY 1 cut(s) 513
Bsu15I ATCGAT 1 cut(s) 1086
BsuRI GGCC 4 cut(s) 341, 395, 621, 640
BsuTUI ATCGAT 1 cut(s) 1086
BtsCI GGATG 3 cut(s) 857, 874, 991
Cac8I GCNNGC 3 cut(s) 339, 526, 1034
CfoI GCGC 2 cut(s) 61, 524
Cfr10I RCCGGY 1 cut(s) 524
Cfr13I GGNCC 4 cut(s) 619, 625, 638, 688
ClaI ATCGAT 1 cut(s) 1086
CseI GACGC 1 cut(s) 259
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 3 cut(s) 635, 755, 839
DdeI CTNAG 2 cut(s) 462, 491
DinI GGCGCC 2 cut(s) 60, 523
DpnI GATC 7 cut(s) 84, 204, 515, 566, 597, 822, 1085
DpnII GATC 7 cut(s) 82, 202, 513, 564, 595, 820, 1083
EaeI YGGCCR 1 cut(s) 339
Eam1104I CTCTTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 274
EciI GGCGGA 3 cut(s) 195, 446, 540
Eco130I CCWWGG 2 cut(s) 128, 390
Eco24I GRGCYC 1 cut(s) 148
Eco32I GATATC 1 cut(s) 183
Eco47I GGWCC 2 cut(s) 625, 688
Eco72I CACGTG 1 cut(s) 441
EcoO109I RGGNCCY 2 cut(s) 625, 688
EcoRI GAATTC 1 cut(s) 323
EcoRII CCWGG 3 cut(s) 621, 699, 947
EcoRV GATATC 1 cut(s) 183
EcoT14I CCWWGG 2 cut(s) 128, 390
EcoT38I GRGCYC 1 cut(s) 148
EgeI GGCGCC 2 cut(s) 60, 523
EheI GGCGCC 2 cut(s) 60, 523
ErhI CCWWGG 2 cut(s) 128, 390
FaeI CATG 3 cut(s) 638, 758, 842
FaqI GGGAC 1 cut(s) 674
FatI CATG 3 cut(s) 634, 754, 838
FauI CCCGC 1 cut(s) 43
FbaI TGATCA 1 cut(s) 82
Fnu4HI GCNGC 6 cut(s) 75, 137, 155, 335, 987, 1030
FokI GGATG 3 cut(s) 864, 881, 978
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 6 cut(s) 75, 137, 155, 335, 987, 1030
FspBI CTAG 1 cut(s) 764
GlaI GCGC 2 cut(s) 60, 523
GluI GCNGC 6 cut(s) 75, 137, 155, 335, 987, 1030
HaeII RGCGCY 2 cut(s) 62, 525
HaeIII GGCC 4 cut(s) 341, 395, 621, 640
HapII CCGG 6 cut(s) 18, 372, 519, 525, 641, 999
HgaI GACGC 1 cut(s) 259
HhaI GCGC 2 cut(s) 61, 524
Hin1I GRCGYC 3 cut(s) 59, 251, 522
Hin1II CATG 3 cut(s) 638, 758, 842
Hin6I GCGC 2 cut(s) 59, 522
HinP1I GCGC 2 cut(s) 59, 522
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 4 cut(s) 226, 378, 386, 556
HpaII CCGG 6 cut(s) 18, 372, 519, 525, 641, 999
HphI GGTGA 4 cut(s) 249, 289, 413, 802
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 6 cut(s) 45, 246, 385, 463, 543, 579
Hpy188III TCNNGA 1 cut(s) 764
Hpy8I GTNNAC 1 cut(s) 487
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 9 cut(s) 16, 120, 398, 468, 673, 679, 892, 896, 1005
HpyCH4III ACNGT 1 cut(s) 814
HpyCH4IV ACGT 1 cut(s) 440
HpyCH4V TGCA 3 cut(s) 842, 1010, 1032
HpyF10VI GCNNNNNNNGC 3 cut(s) 299, 366, 1026
HpyF3I CTNAG 2 cut(s) 462, 491
HpySE526I ACGT 1 cut(s) 440
Hsp92I GRCGYC 3 cut(s) 59, 251, 522
Hsp92II CATG 3 cut(s) 638, 758, 842
HspAI GCGC 2 cut(s) 59, 522
KasI GGCGCC 2 cut(s) 58, 521
KroI GCCGGC 1 cut(s) 524
KroNI GCCGGC 1 cut(s) 526
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 7 cut(s) 82, 202, 513, 564, 595, 820, 1083
LmnI GCTCC 5 cut(s) 133, 151, 374, 421, 718
Lsp1109I GCAGC 5 cut(s) 86, 141, 148, 321, 1016
LweI GCATC 2 cut(s) 859, 979
MaeI CTAG 1 cut(s) 764
MaeII ACGT 1 cut(s) 440
MaeIII GTNAC 2 cut(s) 312, 557
MalI GATC 7 cut(s) 84, 204, 515, 566, 597, 822, 1085
MbiI CCGCTC 1 cut(s) 986
MboI GATC 7 cut(s) 82, 202, 513, 564, 595, 820, 1083
MboII GAAGA 9 cut(s) 177, 221, 261, 264, 267, 270, 273, 559, 971
MflI RGATCY 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 148
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 6 cut(s) 28, 63, 323, 413, 744, 860
MluNI TGGCCA 1 cut(s) 341
Mly113I GGCGCC 2 cut(s) 59, 522
MlyI GAGTC 2 cut(s) 387, 565
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 7 cut(s) 95, 275, 305, 412, 427, 500, 926
Mox20I TGGCCA 1 cut(s) 341
MreI CGCCGGCG 1 cut(s) 524
MroNI GCCGGC 1 cut(s) 524
MscI TGGCCA 1 cut(s) 341
MseI TTAA 3 cut(s) 122, 468, 705
MslI CAYNNNNRTG 1 cut(s) 729
Msp20I TGGCCA 1 cut(s) 341
MspI CCGG 6 cut(s) 18, 372, 519, 525, 641, 999
MspR9I CCNGG 4 cut(s) 623, 642, 701, 949
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 3 cut(s) 623, 701, 949
MwoI GCNNNNNNNGC 3 cut(s) 299, 366, 1026
NaeI GCCGGC 1 cut(s) 526
NarI GGCGCC 2 cut(s) 59, 522
NciI CCSGG 1 cut(s) 642
NdeII GATC 7 cut(s) 82, 202, 513, 564, 595, 820, 1083
NgoMIV GCCGGC 1 cut(s) 524
NlaIII CATG 3 cut(s) 638, 758, 842
NlaIV GGNNCC 5 cut(s) 60, 147, 523, 627, 690
NmeAIII GCCGAG 2 cut(s) 328, 579
NmuCI GTSAC 2 cut(s) 312, 557
PcsI WCGNNNNNNNCGW 1 cut(s) 257
PctI GAATGC 1 cut(s) 105
PdiI GCCGGC 1 cut(s) 526
PfeI GAWTC 2 cut(s) 226, 386
PflMI CCANNNNNTGG 1 cut(s) 755
PkrI GCNGC 6 cut(s) 76, 138, 156, 336, 988, 1031
Ple19I CGATCG 1 cut(s) 1086
PleI GAGTC 2 cut(s) 386, 564
PluTI GGCGCC 2 cut(s) 62, 525
PmaCI CACGTG 1 cut(s) 441
PmlI CACGTG 1 cut(s) 441
PpsI GAGTC 2 cut(s) 386, 564
Ppu21I YACGTR 1 cut(s) 441
PpuMI RGGWCCY 2 cut(s) 625, 688
Psp5II RGGWCCY 2 cut(s) 625, 688
Psp6I CCWGG 3 cut(s) 621, 699, 947
PspCI CACGTG 1 cut(s) 441
PspGI CCWGG 3 cut(s) 621, 699, 947
PspN4I GGNNCC 5 cut(s) 60, 147, 523, 627, 690
PspPI GGNCC 4 cut(s) 619, 625, 638, 688
PspPPI RGGWCCY 2 cut(s) 625, 688
PstI CTGCAG 1 cut(s) 1034
PsuI RGATCY 1 cut(s) 513
PvuI CGATCG 1 cut(s) 1086
RseI CAYNNNNRTG 1 cut(s) 729
SaqAI TTAA 3 cut(s) 122, 468, 705
SatI GCNGC 6 cut(s) 75, 137, 155, 335, 987, 1030
Sau3AI GATC 7 cut(s) 82, 202, 513, 564, 595, 820, 1083
Sau96I GGNCC 4 cut(s) 619, 625, 638, 688
SchI GAGTC 2 cut(s) 387, 565
ScrFI CCNGG 4 cut(s) 623, 642, 701, 949
SduI GDGCHC 1 cut(s) 148
SfaNI GCATC 2 cut(s) 859, 979
SfcI CTRYAG 1 cut(s) 1030
SfoI GGCGCC 2 cut(s) 60, 523
SgrAI CRCCGGYG 1 cut(s) 524
SinI GGWCC 2 cut(s) 625, 688
SmiMI CAYNNNNRTG 1 cut(s) 729
SmlI CTYRAG 1 cut(s) 1061
SmoI CTYRAG 1 cut(s) 1061
Sse9I AATT 6 cut(s) 28, 63, 323, 413, 744, 860
SsiI CCGC 9 cut(s) 36, 206, 300, 358, 431, 528, 551, 933, 986
SspDI GGCGCC 2 cut(s) 58, 521
SspMI CTAG 1 cut(s) 764
StyD4I CCNGG 4 cut(s) 621, 640, 699, 947
StyI CCWWGG 2 cut(s) 128, 390
TaaI ACNGT 1 cut(s) 814
TaiI ACGT 1 cut(s) 443
TaqI TCGA 4 cut(s) 695, 965, 982, 1086
TasI AATT 6 cut(s) 28, 63, 323, 413, 744, 860
TauI GCSGC 1 cut(s) 989
TfiI GAWTC 2 cut(s) 226, 386
Tru1I TTAA 3 cut(s) 122, 468, 705
Tru9I TTAA 3 cut(s) 122, 468, 705
TseFI GTSAC 2 cut(s) 312, 557
TseI GCWGC 5 cut(s) 74, 136, 154, 334, 1029
Tsp45I GTSAC 2 cut(s) 312, 557
TspDTI ATGAA 1 cut(s) 56
TspGWI ACGGA 2 cut(s) 276, 881
Van91I CCANNNNNTGG 1 cut(s) 755
VpaK11BI GGWCC 2 cut(s) 625, 688
XapI RAATTY 1 cut(s) 323
XbaI TCTAGA 1 cut(s) 763
XspI CTAG 1 cut(s) 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.