Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005748

Physical Location & Seq

Genomic Coordinates Reverse (-)

7153511 .. 7156536

Gene Structure 3026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGATTCGATTGAGCCACCATCGTTTTCGCTAGGGTTTGATCTTGATGCTGCATCGGATCTCCAATCGGAAATCCATCAAAACCCTAGCTCCACCGGCGACCAATTAATCGGGGACGGCGATAACGAGCCAGAGTTGGGACTTACTGTCTCAGATTCCGATCGGGAGCTTGAACCAGATTTTACAAGCCCGGTTCTCAAGCGGTTGCGACGAGGGATTAATCCCAACAAGTGTTCTGTGAAAGATGATAGAAGCGTAGCTGTAGAGGATCGGGATGATGACATTGAAGAGTTCTCTTCTCCTGAGGATTTTCCTACGGACGCACCGGCCTCAACAAGAAGTCATTTTTCTAGTTGCAGCTCAAGGGTGCCACTTCATGGTTCTGGGGTTTTATCTAATCAACCTTCTATCTCTCGGGGAAAAAGAAAGCAGTCGGATGTTCAAGCATCTGCTGCCTCTGGGATTAGTTCTGTTGCATCGTTGTTTCAGATGTCAAGTCGTAGTCCTCTACGAAGGTTCCAGCTACTAGATTCAGATTCTGAAGATGACCATCCATCCACCAGCAGAGATTTAAGCGGAGCAACTAAAAAACATGATTCATTCTCAAAGAATCAACCATCTATTGCAAGTAAACCGAAGAGAAAGGAACCTGGATCTATCCCCTGTATTAAAGATCTGTGGAAAGATTTTTCCCCGGCAAGTTCCAAGATTCAGACACCAGCTTTCGATGATGTTTGTCAGGACTATTTTATCTCCATCAAGACGACTAGCACAGCTCAGAAACAAAGCAGTGCTGTGGCAAGTAGTAGCAATAGCGGAAATCATAACTTGACTGGCTTTCAGCAAACTGAGCTATTCCACGATTTTTCCCACCCTTCTCCTCCATCTCATCGTTTCTTCTTGCATAGTGATCCAAGGATCCGGAATCTAGCTCGACAGCGGTTACCAAACTTCTTTCCTCTGGGAATTGTCAATGATAGGGAGAGCCAGCGAGAGGTGTTCCTTGTTGATTATATGAATCAATTTGGCAGCAAAGGGAGTTCTAAAGCTGGAGACTCTAGCAGCAAAAGCTGCAGAAGAGGGAAAACAAAGTCAAAGGTTTCAAAGAGCCAAGAGAGCGCACACAATTCTGAAGGCTGGTTAAATCCTAAAACGAGAGCTGCAGCTCCAAAGGATGCTGGGAAAAGGCGTGTATCTGCTGACAGTGGCTCTGCAGGTCATTGGTTCACATCCCCAGAAGGAAGAAAGGTATATATCTCTAAAAGCGGACAGGAGTTTTCAGGTCAAAGTGCTTATAGATGTTACAAAAAGGAGAACGGAGTCGGGTTTAAGAAGTCCAGAAAGAAACGACAACCAAAGAAAAAGGCGAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

458

Amino Acids

50.33

Weight (kDa)

9.29

Isoelectric Point (pI)

63.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20490
fragaria_vesca	FvH4_3g22630 FvH4_3g22630 FvH4_3g22630
malus_domestica	MD03G1201600.v1.1
prunus_persica	Prupe.4G212300_v2.0.a1 Prupe.4G212300_v2.0.a1 Prupe.4G212300_v2.0.a1
pyrus_communis	pycom03g15290 pycom03g15310
rosa_chinensis	RchiOBHm_Chr5g0039401
rosa_laevigata	RLG00000033911
rosa_multiflora	Rmu_sc0004395.1_g000010 Rmu_sc0004395.1_g000013 Rmu_sc0007310.1_g000002 Rmu_sc0007310.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040530 Rroxscaffold_1G00041820
rosa_rugosa	Rorug05G0178800 Rorug05G0178900 Rorug05G0179000
rosa_samantha	Rh5AG265400 Rh5BG269800 Rh5CG302900 Rh5DG277700 Rh5DG278000
rosa_wichuraiana	Rw5G024860 Rw5G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1205
AccB1I	GGYRCC	1 cut(s)	367
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccIII	TCCGGA	1 cut(s)	921
AciI	CCGC	5 cut(s)	202, 576, 816, 940, 1266
AclWI	GGATC	6 cut(s)	66, 276, 661, 905, 913, 926
AcuI	CTGAAG	2 cut(s)	561, 1152
AfiI	CCNNNNNNNGG	3 cut(s)	137, 377, 994
AgsI	TTSAA	4 cut(s)	173, 287, 443, 1104
AhdI	GACNNNNNGTC	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	649
Alw26I	GTCTC	2 cut(s)	154, 1047
AlwI	GGATC	6 cut(s)	66, 276, 661, 905, 913, 926
AlwNI	CAGNNNCTG	1 cut(s)	539
Ama87I	CYCGRG	1 cut(s)	414
Aor13HI	TCCGGA	1 cut(s)	921
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	8 cut(s)	50, 357, 452, 1029, 1062, 1071, 1160, 1163
AseI	ATTAAT	2 cut(s)	107, 219
AspLEI	GCGC	1 cut(s)	1121
AsuC2I	CCSGG	2 cut(s)	191, 695
AvaI	CYCGRG	1 cut(s)	414
AxyI	CCTNAGG	1 cut(s)	303
BamHI	GGATCC	1 cut(s)	918
BanI	GGYRCC	1 cut(s)	367
BbvI	GCAGC	8 cut(s)	37, 369, 439, 1041, 1058, 1074, 1147, 1175
BccI	CCATC	7 cut(s)	28, 84, 558, 562, 625, 764, 892
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	651
BcnI	CCSGG	2 cut(s)	191, 695
BcoDI	GTCTC	2 cut(s)	154, 1047
BfaI	CTAG	7 cut(s)	32, 87, 351, 527, 768, 929, 1059
BfmI	CTRYAG	4 cut(s)	261, 1072, 1161, 1212
BfuAI	ACCTGC	1 cut(s)	1205
BglII	AGATCT	1 cut(s)	673
BisI	GCNGC	8 cut(s)	51, 358, 453, 1030, 1063, 1072, 1161, 1164
BlsI	GCNGC	8 cut(s)	52, 359, 454, 1031, 1064, 1073, 1162, 1165
Bme1390I	CCNGG	3 cut(s)	191, 651, 695
BmeRI	GACNNNNNGTC	1 cut(s)	146
BmeT110I	CYCGRG	1 cut(s)	414
BmiI	GGNNCC	4 cut(s)	369, 518, 648, 920
BmrFI	CCNGG	3 cut(s)	191, 651, 695
BmsI	GCATC	5 cut(s)	37, 62, 455, 485, 1165
BpmI	CTGGAG	1 cut(s)	1071
BpuEI	CTTGAG	2 cut(s)	182, 346
BpuMI	CCSGG	2 cut(s)	191, 695
BsaBI	GATNNNNATC	2 cut(s)	159, 549
BsaJI	CCNNGG	2 cut(s)	693, 914
BsaWI	WCCGGW	1 cut(s)	921
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 377, 994
Bse118I	RCCGGY	2 cut(s)	95, 325
Bse1I	ACTGG	1 cut(s)	838
Bse21I	CCTNAGG	1 cut(s)	303
Bse8I	GATNNNNATC	2 cut(s)	159, 549
BseAI	TCCGGA	1 cut(s)	921
BseBI	CCWGG	1 cut(s)	651
BseDI	CCNNGG	2 cut(s)	693, 914
BseGI	GGATG	6 cut(s)	280, 442, 550, 554, 1180, 1229
BseJI	GATNNNNATC	2 cut(s)	159, 549
BseLI	CCNNNNNNNGG	3 cut(s)	137, 377, 994
BseMII	CTCAG	4 cut(s)	165, 294, 791, 840
BseNI	ACTGG	1 cut(s)	838
BseRI	GAGGAG	1 cut(s)	870
BseXI	GCAGC	8 cut(s)	37, 369, 439, 1041, 1058, 1074, 1147, 1175
BseYI	CCCAGC	1 cut(s)	1178
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	367
BsiEI	CGRYCG	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	414
BsiSI	CCGG	5 cut(s)	96, 191, 326, 695, 922
BslFI	GGGAC	2 cut(s)	128, 153
BslI	CCNNNNNNNGG	3 cut(s)	137, 377, 994
BsmAI	GTCTC	2 cut(s)	154, 1047
BsmFI	GGGAC	2 cut(s)	128, 153
BsnI	GGCC	1 cut(s)	329
BsoBI	CYCGRG	1 cut(s)	414
Bsp13I	TCCGGA	1 cut(s)	921
Bsp143I	GATC	8 cut(s)	40, 58, 160, 268, 653, 673, 910, 918
BspACI	CCGC	5 cut(s)	202, 576, 816, 940, 1266
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	4 cut(s)	164, 295, 790, 841
BspEI	TCCGGA	1 cut(s)	921
BspLI	GGNNCC	4 cut(s)	369, 518, 648, 920
BspMAI	CTGCAG	3 cut(s)	1076, 1165, 1216
BspMI	ACCTGC	1 cut(s)	1205
BspPI	GGATC	6 cut(s)	66, 276, 661, 905, 913, 926
BspT107I	GGYRCC	1 cut(s)	367
BsrFI	RCCGGY	2 cut(s)	95, 325
BsrI	ACTGG	1 cut(s)	838
BssAI	RCCGGY	2 cut(s)	95, 325
BssECI	CCNNGG	2 cut(s)	693, 914
BssMI	GATC	8 cut(s)	40, 58, 160, 268, 653, 673, 910, 918
BssT1I	CCWWGG	1 cut(s)	914
Bst2UI	CCWGG	1 cut(s)	651
Bst4CI	ACNGT	2 cut(s)	148, 1205
Bst6I	CTCTTC	4 cut(s)	282, 301, 632, 1072
BstAPI	GCANNNNNTGC	2 cut(s)	452, 1071
BstC8I	GCNNGC	1 cut(s)	989
BstDEI	CTNAG	4 cut(s)	151, 303, 777, 849
BstEII	GGTNACC	1 cut(s)	942
BstF5I	GGATG	6 cut(s)	280, 442, 550, 554, 1180, 1229
BstHHI	GCGC	1 cut(s)	1121
BstKTI	GATC	8 cut(s)	43, 61, 163, 271, 656, 676, 913, 921
BstMAI	GTCTC	2 cut(s)	154, 1047
BstMBI	GATC	8 cut(s)	40, 58, 160, 268, 653, 673, 910, 918
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	6 cut(s)	96, 452, 850, 1068, 1071, 1116
BstNI	CCWGG	1 cut(s)	651
BstPI	GGTNACC	1 cut(s)	942
BstSCI	CCNGG	3 cut(s)	189, 649, 693
BstSFI	CTRYAG	4 cut(s)	261, 1072, 1161, 1212
BstV1I	GCAGC	8 cut(s)	37, 369, 439, 1041, 1058, 1074, 1147, 1175
BstX2I	RGATCY	4 cut(s)	58, 653, 673, 918
BstYI	RGATCY	4 cut(s)	58, 653, 673, 918
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	329
BtsCI	GGATG	6 cut(s)	280, 442, 550, 554, 1180, 1229
BtsI	GCAGTG	1 cut(s)	796
BtsIMutI	CAGTG	2 cut(s)	796, 1210
BveI	ACCTGC	1 cut(s)	1205
Cac8I	GCNNGC	1 cut(s)	989
CaiI	CAGNNNCTG	1 cut(s)	539
CfoI	GCGC	1 cut(s)	1121
Cfr10I	RCCGGY	2 cut(s)	95, 325
CseI	GACGC	1 cut(s)	329
CviAII	CATG	2 cut(s)	377, 593
DdeI	CTNAG	4 cut(s)	151, 303, 777, 849
DpnI	GATC	8 cut(s)	42, 60, 162, 270, 655, 675, 912, 920
DpnII	GATC	8 cut(s)	40, 58, 160, 268, 653, 673, 910, 918
DriI	GACNNNNNGTC	1 cut(s)	146
Eam1104I	CTCTTC	4 cut(s)	282, 301, 632, 1072
Eam1105I	GACNNNNNGTC	1 cut(s)	146
EarI	CTCTTC	4 cut(s)	282, 301, 632, 1072
Eco130I	CCWWGG	1 cut(s)	914
Eco57I	CTGAAG	2 cut(s)	561, 1152
Eco81I	CCTNAGG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	414
Eco91I	GGTNACC	1 cut(s)	942
EcoO65I	GGTNACC	1 cut(s)	942
EcoRII	CCWGG	1 cut(s)	649
EcoT14I	CCWWGG	1 cut(s)	914
ErhI	CCWWGG	1 cut(s)	914
FaeI	CATG	2 cut(s)	380, 596
FaiI	YATR	9 cut(s)	378, 594, 825, 906, 1014, 1016, 1252, 1254, 1296
FaqI	GGGAC	2 cut(s)	128, 153
FatI	CATG	2 cut(s)	376, 592
Fnu4HI	GCNGC	8 cut(s)	51, 358, 453, 1030, 1063, 1072, 1161, 1164
FokI	GGATG	6 cut(s)	287, 449, 537, 541, 1187, 1216
Fsp4HI	GCNGC	8 cut(s)	51, 358, 453, 1030, 1063, 1072, 1161, 1164
FspBI	CTAG	7 cut(s)	32, 87, 351, 527, 768, 929, 1059
GlaI	GCGC	1 cut(s)	1120
GluI	GCNGC	8 cut(s)	51, 358, 453, 1030, 1063, 1072, 1161, 1164
GsaI	CCCAGC	1 cut(s)	1182
GsuI	CTGGAG	1 cut(s)	1071
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	5 cut(s)	96, 191, 326, 695, 922
HgaI	GACGC	1 cut(s)	329
HhaI	GCGC	1 cut(s)	1121
Hin1II	CATG	2 cut(s)	380, 596
Hin6I	GCGC	1 cut(s)	1119
HinP1I	GCGC	1 cut(s)	1119
HpaII	CCGG	5 cut(s)	96, 191, 326, 695, 922
Hpy166II	GTNNAC	2 cut(s)	632, 1227
Hpy188III	TCNNGA	8 cut(s)	44, 164, 272, 302, 740, 760, 922, 1338
Hpy8I	GTNNAC	2 cut(s)	632, 1227
Hpy99I	CGWCG	1 cut(s)	213
HpyAV	CCTTC	5 cut(s)	414, 507, 885, 1127, 1232
HpyCH4III	ACNGT	2 cut(s)	148, 1205
HpyCH4V	TGCA	8 cut(s)	53, 357, 476, 626, 904, 1074, 1163, 1214
HpyF10VI	GCNNNNNNNGC	6 cut(s)	96, 452, 850, 1068, 1071, 1116
HpyF3I	CTNAG	4 cut(s)	151, 303, 777, 849
Hsp92II	CATG	2 cut(s)	380, 596
HspAI	GCGC	1 cut(s)	1119
Kpn2I	TCCGGA	1 cut(s)	921
Kzo9I	GATC	8 cut(s)	40, 58, 160, 268, 653, 673, 910, 918
LmnI	GCTCC	4 cut(s)	95, 166, 578, 1171
Lsp1109I	GCAGC	8 cut(s)	37, 369, 439, 1041, 1058, 1074, 1147, 1175
LweI	GCATC	5 cut(s)	37, 62, 455, 485, 1165
MaeI	CTAG	7 cut(s)	32, 87, 351, 527, 768, 929, 1059
MaeIII	GTNAC	2 cut(s)	942, 1301
MalI	GATC	8 cut(s)	42, 60, 162, 270, 655, 675, 912, 920
MboI	GATC	8 cut(s)	40, 58, 160, 268, 653, 673, 910, 918
MboII	GAAGA	7 cut(s)	288, 299, 554, 649, 889, 1089, 1254
MflI	RGATCY	4 cut(s)	58, 653, 673, 918
MluCI	AATT	5 cut(s)	104, 966, 1022, 1126, 1372
MlyI	GAGTC	2 cut(s)	1049, 1329
MmeI	TCCRAC	1 cut(s)	414
MroI	TCCGGA	1 cut(s)	921
MseI	TTAA	6 cut(s)	107, 219, 572, 669, 1142, 1329
MspA1I	CMGCKG	1 cut(s)	940
MspI	CCGG	5 cut(s)	96, 191, 326, 695, 922
MspR9I	CCNGG	3 cut(s)	191, 651, 695
MvaI	CCWGG	1 cut(s)	651
MwoI	GCNNNNNNNGC	6 cut(s)	96, 452, 850, 1068, 1071, 1116
NciI	CCSGG	2 cut(s)	191, 695
NdeII	GATC	8 cut(s)	40, 58, 160, 268, 653, 673, 910, 918
NlaIII	CATG	2 cut(s)	380, 596
NlaIV	GGNNCC	4 cut(s)	369, 518, 648, 920
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 123
PfeI	GAWTC	9 cut(s)	5, 155, 530, 536, 596, 610, 709, 925, 1018
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	8 cut(s)	52, 359, 454, 1031, 1064, 1073, 1162, 1165
Ple19I	CGATCG	1 cut(s)	163
PleI	GAGTC	2 cut(s)	1049, 1328
PpsI	GAGTC	2 cut(s)	1049, 1328
PshBI	ATTAAT	2 cut(s)	107, 219
Psp6I	CCWGG	1 cut(s)	649
PspEI	GGTNACC	1 cut(s)	942
PspFI	CCCAGC	1 cut(s)	1178
PspGI	CCWGG	1 cut(s)	649
PspN4I	GGNNCC	4 cut(s)	369, 518, 648, 920
PstI	CTGCAG	3 cut(s)	1076, 1165, 1216
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	4 cut(s)	58, 653, 673, 918
PvuI	CGATCG	1 cut(s)	163
SaqAI	TTAA	6 cut(s)	107, 219, 572, 669, 1142, 1329
SatI	GCNGC	8 cut(s)	51, 358, 453, 1030, 1063, 1072, 1161, 1164
Sau3AI	GATC	8 cut(s)	40, 58, 160, 268, 653, 673, 910, 918
SchI	GAGTC	2 cut(s)	1049, 1329
ScrFI	CCNGG	3 cut(s)	191, 651, 695
SfaNI	GCATC	5 cut(s)	37, 62, 455, 485, 1165
SfcI	CTRYAG	4 cut(s)	261, 1072, 1161, 1212
SgrAI	CRCCGGYG	1 cut(s)	95
SmlI	CTYRAG	2 cut(s)	197, 361
SmoI	CTYRAG	2 cut(s)	197, 361
Sse9I	AATT	5 cut(s)	104, 966, 1022, 1126, 1372
SsiI	CCGC	5 cut(s)	202, 576, 816, 940, 1266
SspMI	CTAG	7 cut(s)	32, 87, 351, 527, 768, 929, 1059
StyD4I	CCNGG	3 cut(s)	189, 649, 693
StyI	CCWWGG	1 cut(s)	914
TaaI	ACNGT	2 cut(s)	148, 1205
TaqI	TCGA	3 cut(s)	8, 726, 934
TasI	AATT	5 cut(s)	104, 966, 1022, 1126, 1372
TfiI	GAWTC	9 cut(s)	5, 155, 530, 536, 596, 610, 709, 925, 1018
Tru1I	TTAA	6 cut(s)	107, 219, 572, 669, 1142, 1329
Tru9I	TTAA	6 cut(s)	107, 219, 572, 669, 1142, 1329
TscAI	CASTG	2 cut(s)	796, 1210
TseI	GCWGC	8 cut(s)	50, 357, 452, 1029, 1062, 1071, 1160, 1163
TspDTI	ATGAA	3 cut(s)	365, 588, 1031
TspGWI	ACGGA	2 cut(s)	332, 1332
TspRI	CASTG	2 cut(s)	796, 1210
Van91I	CCANNNNNTGG	1 cut(s)	377
VspI	ATTAAT	2 cut(s)	107, 219
XspI	CTAG	7 cut(s)	32, 87, 351, 527, 768, 929, 1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.