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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G20490 |
| fragaria_vesca | FvH4_3g22630 FvH4_3g22630 FvH4_3g22630 |
| malus_domestica | MD03G1201600.v1.1 |
| prunus_persica | Prupe.4G212300_v2.0.a1 Prupe.4G212300_v2.0.a1 Prupe.4G212300_v2.0.a1 |
| pyrus_communis | pycom03g15290 pycom03g15310 |
| rosa_chinensis | RchiOBHm_Chr5g0039401 |
| rosa_laevigata | RLG00000033911 |
| rosa_multiflora | Rmu_sc0004395.1_g000010 Rmu_sc0004395.1_g000013 Rmu_sc0007310.1_g000002 Rmu_sc0007310.1_g000008 |
| rosa_roxburghii | Rroxscaffold_1G00040530 Rroxscaffold_1G00041820 |
| rosa_rugosa | Rorug05G0178800 Rorug05G0178900 Rorug05G0179000 |
| rosa_samantha | Rh5AG265400 Rh5BG269800 Rh5CG302900 Rh5DG277700 Rh5DG278000 |
| rosa_wichuraiana | Rw5G024860 Rw5G024880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 691, 856 |
| Acc36I | ACCTGC | 2 cut(s) | 691, 856 |
| AccI | GTMKAC | 1 cut(s) | 1325 |
| AccII | CGCG | 2 cut(s) | 100, 142 |
| AciI | CCGC | 9 cut(s) | 6, 98, 137, 140, 142, 181, 1132, 1237, 1302 |
| AclWI | GGATC | 4 cut(s) | 129, 488, 830, 869 |
| AcoI | YGGCCR | 2 cut(s) | 3, 571 |
| AcsI | RAATTY | 3 cut(s) | 425, 778, 913 |
| AcuI | CTGAAG | 3 cut(s) | 179, 483, 645 |
| AcyI | GRCGYC | 1 cut(s) | 197 |
| AdeI | CACNNNGTG | 1 cut(s) | 800 |
| AfaI | GTAC | 4 cut(s) | 281, 595, 769, 1274 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 317, 1443 |
| AgsI | TTSAA | 7 cut(s) | 215, 815, 1011, 1044, 1061, 1244, 1407 |
| AhlI | ACTAGT | 1 cut(s) | 587 |
| AjnI | CCWGG | 2 cut(s) | 568, 1333 |
| AleI | CACNNNNGTG | 1 cut(s) | 116 |
| AluBI | AGCT | 8 cut(s) | 64, 74, 148, 335, 395, 1007, 1109, 1310 |
| AluI | AGCT | 8 cut(s) | 64, 74, 148, 335, 395, 1007, 1109, 1310 |
| Alw21I | GWGCWC | 2 cut(s) | 66, 150 |
| Alw26I | GTCTC | 1 cut(s) | 1024 |
| AlwI | GGATC | 4 cut(s) | 129, 488, 830, 869 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 398, 1334 |
| AoxI | GGCC | 4 cut(s) | 3, 571, 1330, 1434 |
| ApoI | RAATTY | 3 cut(s) | 425, 778, 913 |
| AspS9I | GGNCC | 1 cut(s) | 1331 |
| AsuHPI | GGTGA | 2 cut(s) | 1102, 1277 |
| AsuII | TTCGAA | 2 cut(s) | 54, 886 |
| BalI | TGGCCA | 1 cut(s) | 573 |
| BanII | GRGCYC | 3 cut(s) | 66, 150, 189 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 511, 543 |
| Bbv12I | GWGCWC | 2 cut(s) | 66, 150 |
| BccI | CCATC | 1 cut(s) | 861 |
| BceAI | ACGGC | 1 cut(s) | 184 |
| BciT130I | CCWGG | 2 cut(s) | 570, 1335 |
| BcoDI | GTCTC | 1 cut(s) | 1024 |
| BcuI | ACTAGT | 1 cut(s) | 587 |
| BfaI | CTAG | 3 cut(s) | 588, 1281, 1299 |
| BfmI | CTRYAG | 3 cut(s) | 292, 898, 1393 |
| BfuAI | ACCTGC | 2 cut(s) | 691, 856 |
| BisI | GCNGC | 3 cut(s) | 6, 137, 140 |
| BlsI | GCNGC | 3 cut(s) | 7, 138, 141 |
| Bme1390I | CCNGG | 2 cut(s) | 570, 1335 |
| BmgT120I | GGNCC | 1 cut(s) | 1331 |
| BmiI | GGNNCC | 2 cut(s) | 186, 1212 |
| BmrFI | CCNGG | 2 cut(s) | 570, 1335 |
| BmrI | ACTGGG | 5 cut(s) | 792, 1096, 1185, 1213, 1374 |
| BmsI | GCATC | 3 cut(s) | 617, 745, 974 |
| BmuI | ACTGGG | 5 cut(s) | 792, 1096, 1185, 1213, 1374 |
| BoxI | GACNNNNGTC | 1 cut(s) | 90 |
| BpmI | CTGGAG | 2 cut(s) | 73, 767 |
| Bpu14I | TTCGAA | 2 cut(s) | 54, 886 |
| BpuEI | CTTGAG | 1 cut(s) | 134 |
| BsaBI | GATNNNNATC | 2 cut(s) | 120, 759 |
| BsaHI | GRCGYC | 1 cut(s) | 197 |
| BsaJI | CCNNGG | 4 cut(s) | 140, 568, 924, 1333 |
| BsaWI | WCCGGW | 1 cut(s) | 103 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 317, 1443 |
| Bse1I | ACTGG | 7 cut(s) | 90, 798, 964, 1091, 1180, 1208, 1369 |
| Bse8I | GATNNNNATC | 2 cut(s) | 120, 759 |
| BseBI | CCWGG | 2 cut(s) | 570, 1335 |
| BseDI | CCNNGG | 4 cut(s) | 140, 568, 924, 1333 |
| BseGI | GGATG | 4 cut(s) | 287, 344, 697, 760 |
| BseJI | GATNNNNATC | 2 cut(s) | 120, 759 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 317, 1443 |
| BseNI | ACTGG | 7 cut(s) | 90, 798, 964, 1091, 1180, 1208, 1369 |
| BseRI | GAGGAG | 1 cut(s) | 66 |
| BseYI | CCCAGC | 1 cut(s) | 391 |
| Bsh1236I | CGCG | 2 cut(s) | 100, 142 |
| BshFI | GGCC | 4 cut(s) | 5, 573, 1332, 1436 |
| BsiHKAI | GWGCWC | 2 cut(s) | 66, 150 |
| BsiSI | CCGG | 3 cut(s) | 104, 173, 418 |
| BslFI | GGGAC | 2 cut(s) | 293, 374 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 317, 1443 |
| BsmAI | GTCTC | 1 cut(s) | 1024 |
| BsmFI | GGGAC | 2 cut(s) | 293, 374 |
| BsnI | GGCC | 4 cut(s) | 5, 573, 1332, 1436 |
| Bsp119I | TTCGAA | 2 cut(s) | 54, 886 |
| Bsp1286I | GDGCHC | 3 cut(s) | 66, 150, 189 |
| Bsp143I | GATC | 5 cut(s) | 121, 129, 493, 835, 874 |
| BspACI | CCGC | 9 cut(s) | 6, 98, 137, 140, 142, 181, 1132, 1237, 1302 |
| BspANI | GGCC | 4 cut(s) | 5, 573, 1332, 1436 |
| BspFNI | CGCG | 2 cut(s) | 100, 142 |
| BspHI | TCATGA | 1 cut(s) | 784 |
| BspLI | GGNNCC | 2 cut(s) | 186, 1212 |
| BspMAI | CTGCAG | 1 cut(s) | 902 |
| BspMI | ACCTGC | 2 cut(s) | 691, 856 |
| BspPI | GGATC | 4 cut(s) | 129, 488, 830, 869 |
| BspT104I | TTCGAA | 2 cut(s) | 54, 886 |
| BsrI | ACTGG | 7 cut(s) | 90, 798, 964, 1091, 1180, 1208, 1369 |
| BssECI | CCNNGG | 4 cut(s) | 140, 568, 924, 1333 |
| BssMI | GATC | 5 cut(s) | 121, 129, 493, 835, 874 |
| BssNAI | GTATAC | 1 cut(s) | 1326 |
| BssNI | GRCGYC | 1 cut(s) | 197 |
| BssT1I | CCWWGG | 1 cut(s) | 924 |
| Bst1107I | GTATAC | 1 cut(s) | 1326 |
| Bst2UI | CCWGG | 2 cut(s) | 570, 1335 |
| Bst4CI | ACNGT | 4 cut(s) | 270, 279, 1021, 1401 |
| Bst6I | CTCTTC | 3 cut(s) | 222, 241, 462 |
| BstACI | GRCGYC | 1 cut(s) | 197 |
| BstBI | TTCGAA | 2 cut(s) | 54, 886 |
| BstC8I | GCNNGC | 6 cut(s) | 415, 908, 1191, 1228, 1304, 1308 |
| BstDEI | CTNAG | 1 cut(s) | 531 |
| BstDSI | CCRYGG | 1 cut(s) | 140 |
| BstF5I | GGATG | 4 cut(s) | 287, 344, 697, 760 |
| BstFNI | CGCG | 2 cut(s) | 100, 142 |
| BstKTI | GATC | 5 cut(s) | 124, 132, 496, 838, 877 |
| BstMAI | GTCTC | 1 cut(s) | 1024 |
| BstMBI | GATC | 5 cut(s) | 121, 129, 493, 835, 874 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 145, 154, 169, 178, 1433 |
| BstNI | CCWGG | 2 cut(s) | 570, 1335 |
| BstNSI | RCATGY | 1 cut(s) | 1193 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 90 |
| BstSCI | CCNGG | 2 cut(s) | 568, 1333 |
| BstSFI | CTRYAG | 3 cut(s) | 292, 898, 1393 |
| BstUI | CGCG | 2 cut(s) | 100, 142 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 359 |
| BstZ17I | GTATAC | 1 cut(s) | 1326 |
| BsuRI | GGCC | 4 cut(s) | 5, 573, 1332, 1436 |
| BtgI | CCRYGG | 1 cut(s) | 140 |
| BtsCI | GGATG | 4 cut(s) | 287, 344, 697, 760 |
| BtsIMutI | CAGTG | 5 cut(s) | 111, 805, 949, 1026, 1173 |
| BveI | ACCTGC | 2 cut(s) | 691, 856 |
| Cac8I | GCNNGC | 6 cut(s) | 415, 908, 1191, 1228, 1304, 1308 |
| CaiI | CAGNNNCTG | 2 cut(s) | 398, 1334 |
| CciI | TCATGA | 1 cut(s) | 784 |
| Cfr13I | GGNCC | 1 cut(s) | 1331 |
| Cfr42I | CCGCGG | 1 cut(s) | 143 |
| CseI | GACGC | 2 cut(s) | 89, 205 |
| Csp6I | GTAC | 4 cut(s) | 280, 594, 768, 1273 |
| CviAII | CATG | 5 cut(s) | 785, 982, 1073, 1183, 1190 |
| CviQI | GTAC | 4 cut(s) | 280, 594, 768, 1273 |
| DdeI | CTNAG | 1 cut(s) | 531 |
| DpnI | GATC | 5 cut(s) | 123, 131, 495, 837, 876 |
| DpnII | GATC | 5 cut(s) | 121, 129, 493, 835, 874 |
| DraIII | CACNNNGTG | 1 cut(s) | 800 |
| EaeI | YGGCCR | 2 cut(s) | 3, 571 |
| Eam1104I | CTCTTC | 3 cut(s) | 222, 241, 462 |
| EarI | CTCTTC | 3 cut(s) | 222, 241, 462 |
| Ecl136II | GAGCTC | 2 cut(s) | 64, 148 |
| Eco130I | CCWWGG | 1 cut(s) | 924 |
| Eco24I | GRGCYC | 3 cut(s) | 66, 150, 189 |
| Eco53kI | GAGCTC | 2 cut(s) | 64, 148 |
| Eco57I | CTGAAG | 3 cut(s) | 179, 483, 645 |
| EcoICRI | GAGCTC | 2 cut(s) | 64, 148 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1331 |
| EcoRII | CCWGG | 2 cut(s) | 568, 1333 |
| EcoT14I | CCWWGG | 1 cut(s) | 924 |
| EcoT22I | ATGCAT | 2 cut(s) | 610, 760 |
| EcoT38I | GRGCYC | 3 cut(s) | 66, 150, 189 |
| ErhI | CCWWGG | 1 cut(s) | 924 |
| FaeI | CATG | 5 cut(s) | 788, 985, 1076, 1186, 1193 |
| FaqI | GGGAC | 2 cut(s) | 293, 374 |
| FatI | CATG | 5 cut(s) | 784, 981, 1072, 1182, 1189 |
| FauI | CCCGC | 3 cut(s) | 135, 174, 1295 |
| FblI | GTMKAC | 1 cut(s) | 1325 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 137, 140 |
| FokI | GGATG | 4 cut(s) | 274, 331, 704, 767 |
| FriOI | GRGCYC | 3 cut(s) | 66, 150, 189 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 137, 140 |
| FspBI | CTAG | 3 cut(s) | 588, 1281, 1299 |
| GluI | GCNGC | 3 cut(s) | 6, 137, 140 |
| GsaI | CCCAGC | 1 cut(s) | 395 |
| GsuI | CTGGAG | 2 cut(s) | 73, 767 |
| HaeIII | GGCC | 4 cut(s) | 5, 573, 1332, 1436 |
| HapII | CCGG | 3 cut(s) | 104, 173, 418 |
| HgaI | GACGC | 2 cut(s) | 89, 205 |
| Hin1I | GRCGYC | 1 cut(s) | 197 |
| Hin1II | CATG | 5 cut(s) | 788, 985, 1076, 1186, 1193 |
| HincII | GTYRAC | 5 cut(s) | 109, 273, 444, 538, 1295 |
| HindII | GTYRAC | 5 cut(s) | 109, 273, 444, 538, 1295 |
| HindIII | AAGCTT | 1 cut(s) | 1005 |
| HpaI | GTTAAC | 1 cut(s) | 444 |
| HpaII | CCGG | 3 cut(s) | 104, 173, 418 |
| HphI | GGTGA | 2 cut(s) | 1102, 1277 |
| Hpy166II | GTNNAC | 9 cut(s) | 109, 273, 444, 538, 1093, 1141, 1275, 1295, 1326 |
| Hpy188I | TCNGA | 6 cut(s) | 38, 61, 385, 484, 490, 1029 |
| Hpy8I | GTNNAC | 9 cut(s) | 109, 273, 444, 538, 1093, 1141, 1275, 1295, 1326 |
| Hpy99I | CGWCG | 2 cut(s) | 196, 199 |
| HpyAV | CCTTC | 8 cut(s) | 33, 357, 507, 718, 851, 1335, 1339, 1426 |
| HpyCH4III | ACNGT | 4 cut(s) | 270, 279, 1021, 1401 |
| HpyCH4V | TGCA | 8 cut(s) | 265, 581, 608, 758, 900, 965, 1072, 1253 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 145, 154, 169, 178, 1433 |
| HpyF3I | CTNAG | 1 cut(s) | 531 |
| Hsp92I | GRCGYC | 1 cut(s) | 197 |
| Hsp92II | CATG | 5 cut(s) | 788, 985, 1076, 1186, 1193 |
| KspAI | GTTAAC | 1 cut(s) | 444 |
| KspI | CCGCGG | 1 cut(s) | 143 |
| Kzo9I | GATC | 5 cut(s) | 121, 129, 493, 835, 874 |
| LmnI | GCTCC | 6 cut(s) | 61, 69, 79, 145, 184, 1186 |
| LweI | GCATC | 3 cut(s) | 617, 745, 974 |
| MaeI | CTAG | 3 cut(s) | 588, 1281, 1299 |
| MaeIII | GTNAC | 1 cut(s) | 523 |
| MalI | GATC | 5 cut(s) | 123, 131, 495, 837, 876 |
| MboI | GATC | 5 cut(s) | 121, 129, 493, 835, 874 |
| MboII | GAAGA | 9 cut(s) | 227, 228, 239, 257, 449, 638, 1073, 1161, 1251 |
| MhlI | GDGCHC | 3 cut(s) | 66, 150, 189 |
| MlsI | TGGCCA | 1 cut(s) | 573 |
| MluCI | AATT | 6 cut(s) | 425, 474, 778, 913, 989, 1373 |
| MluNI | TGGCCA | 1 cut(s) | 573 |
| MlyI | GAGTC | 3 cut(s) | 33, 80, 533 |
| MmeI | TCCRAC | 2 cut(s) | 372, 701 |
| MnlI | CCTC | 9 cut(s) | 30, 87, 105, 147, 158, 403, 465, 688, 744 |
| Mox20I | TGGCCA | 1 cut(s) | 573 |
| Mph1103I | ATGCAT | 2 cut(s) | 610, 760 |
| MscI | TGGCCA | 1 cut(s) | 573 |
| MseI | TTAA | 4 cut(s) | 443, 473, 669, 993 |
| MslI | CAYNNNNRTG | 1 cut(s) | 116 |
| Msp20I | TGGCCA | 1 cut(s) | 573 |
| MspA1I | CMGCKG | 1 cut(s) | 142 |
| MspI | CCGG | 3 cut(s) | 104, 173, 418 |
| MspR9I | CCNGG | 2 cut(s) | 570, 1335 |
| MvaI | CCWGG | 2 cut(s) | 570, 1335 |
| MvnI | CGCG | 2 cut(s) | 100, 142 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 145, 154, 169, 178, 1433 |
| NdeII | GATC | 5 cut(s) | 121, 129, 493, 835, 874 |
| NlaIII | CATG | 5 cut(s) | 788, 985, 1076, 1186, 1193 |
| NlaIV | GGNNCC | 2 cut(s) | 186, 1212 |
| NsiI | ATGCAT | 2 cut(s) | 610, 760 |
| NspI | RCATGY | 1 cut(s) | 1193 |
| NspV | TTCGAA | 2 cut(s) | 54, 886 |
| OliI | CACNNNNGTG | 1 cut(s) | 116 |
| PaeI | GCATGC | 1 cut(s) | 1193 |
| PagI | TCATGA | 1 cut(s) | 784 |
| PaqCI | CACCTGC | 2 cut(s) | 691, 856 |
| PfeI | GAWTC | 8 cut(s) | 56, 373, 479, 485, 883, 1024, 1218, 1240 |
| PkrI | GCNGC | 3 cut(s) | 7, 138, 141 |
| PleI | GAGTC | 3 cut(s) | 33, 80, 533 |
| PpsI | GAGTC | 3 cut(s) | 33, 80, 533 |
| PshAI | GACNNNNGTC | 1 cut(s) | 90 |
| Psp124BI | GAGCTC | 2 cut(s) | 66, 150 |
| Psp6I | CCWGG | 2 cut(s) | 568, 1333 |
| PspFI | CCCAGC | 1 cut(s) | 391 |
| PspGI | CCWGG | 2 cut(s) | 568, 1333 |
| PspN4I | GGNNCC | 2 cut(s) | 186, 1212 |
| PspPI | GGNCC | 1 cut(s) | 1331 |
| PstI | CTGCAG | 1 cut(s) | 902 |
| PstNI | CAGNNNCTG | 2 cut(s) | 398, 1334 |
| RsaI | GTAC | 4 cut(s) | 281, 595, 769, 1274 |
| RsaNI | GTAC | 4 cut(s) | 280, 594, 768, 1273 |
| RseI | CAYNNNNRTG | 1 cut(s) | 116 |
| SacI | GAGCTC | 2 cut(s) | 66, 150 |
| SacII | CCGCGG | 1 cut(s) | 143 |
| SaqAI | TTAA | 4 cut(s) | 443, 473, 669, 993 |
| SatI | GCNGC | 3 cut(s) | 6, 137, 140 |
| Sau3AI | GATC | 5 cut(s) | 121, 129, 493, 835, 874 |
| Sau96I | GGNCC | 1 cut(s) | 1331 |
| SchI | GAGTC | 3 cut(s) | 33, 80, 533 |
| ScrFI | CCNGG | 2 cut(s) | 570, 1335 |
| SduI | GDGCHC | 3 cut(s) | 66, 150, 189 |
| SfaNI | GCATC | 3 cut(s) | 617, 745, 974 |
| SfcI | CTRYAG | 3 cut(s) | 292, 898, 1393 |
| Sfr303I | CCGCGG | 1 cut(s) | 143 |
| SfuI | TTCGAA | 2 cut(s) | 54, 886 |
| SgrBI | CCGCGG | 1 cut(s) | 143 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 116 |
| SmlI | CTYRAG | 1 cut(s) | 149 |
| SmoI | CTYRAG | 1 cut(s) | 149 |
| SpeI | ACTAGT | 1 cut(s) | 587 |
| SphI | GCATGC | 1 cut(s) | 1193 |
| Sse9I | AATT | 6 cut(s) | 425, 474, 778, 913, 989, 1373 |
| SsiI | CCGC | 9 cut(s) | 6, 98, 137, 140, 142, 181, 1132, 1237, 1302 |
| SspI | AATATT | 1 cut(s) | 1039 |
| SspMI | CTAG | 3 cut(s) | 588, 1281, 1299 |
| SstI | GAGCTC | 2 cut(s) | 66, 150 |
| StyD4I | CCNGG | 2 cut(s) | 568, 1333 |
| StyI | CCWWGG | 1 cut(s) | 924 |
| TaaI | ACNGT | 4 cut(s) | 270, 279, 1021, 1401 |
| TaqI | TCGA | 7 cut(s) | 42, 54, 124, 132, 225, 256, 886 |
| TaqII | GACCGA | 1 cut(s) | 1150 |
| TasI | AATT | 6 cut(s) | 425, 474, 778, 913, 989, 1373 |
| TauI | GCSGC | 3 cut(s) | 8, 139, 142 |
| TfiI | GAWTC | 8 cut(s) | 56, 373, 479, 485, 883, 1024, 1218, 1240 |
| Tru1I | TTAA | 4 cut(s) | 443, 473, 669, 993 |
| Tru9I | TTAA | 4 cut(s) | 443, 473, 669, 993 |
| TscAI | CASTG | 5 cut(s) | 118, 805, 949, 1026, 1180 |
| TspDTI | ATGAA | 3 cut(s) | 773, 801, 966 |
| TspGWI | ACGGA | 1 cut(s) | 1030 |
| TspRI | CASTG | 5 cut(s) | 118, 805, 949, 1026, 1180 |
| XapI | RAATTY | 3 cut(s) | 425, 778, 913 |
| XceI | RCATGY | 1 cut(s) | 1193 |
| XmiI | GTMKAC | 1 cut(s) | 1325 |
| XspI | CTAG | 3 cut(s) | 588, 1281, 1299 |
| Zsp2I | ATGCAT | 2 cut(s) | 610, 760 |