Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005748

Physical Location & Seq

Genomic Coordinates Reverse (-)

35262559 .. 35265568

Gene Structure 3010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G024860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGGCCGCCGACTACGAACCTCCTTCTTTCTCTCTCGGACTCGATTTCGGGTTCGAATCGGAGCTCCAAACAGCTGCTCCGCCCGACTCCAGTCCTCCGCGTCCTGTTGACACTGATGTGGATCGAGAGATCGAGCCGCCGCGGGAGCTCAAGAGGCTGAAGCGAGGTCTGCCGGAGAAGCGGGAGCCGCCGACGACGCCGTTTTGGAATATTGAAGATGACATCGAAGAGTTCTCTTCTCCCGAAGATACTATTCGAGCAGATGTGCAACGGTCAACACAGTACCAAACATCCTGTAGTAGTTCTAAACTTCCGTTGCGTGGAAGTGGGGTTTTAGCTTCACAATCATCCAACCATCGCATTGGAAGGAAAAGGAATCATATTTCTGATGTCCCAGCTTCTGTGAGTTTGGAGGCAAGCAGCAAAGAATTTGTTTTTCGAAAGTTAACTACCAGCCCTCTTCGTAGGTTTCAGTTAATTGATTCCGATTCTGATGATCCTTCAGTTGACTCATCATCAAAGAAGCAACACACAAACCCTGGTCATTCTGCAACTACTAGTGGTACAAACAAAAATGCATCTACAGGTATGCCTGAAGATGTTGATTTGTGGAAAAACTTTAGTCCAATCAAGAAGTTTAACATTCCAACACCTGCTTTGGATGAGGTATGTCAAGAATACTTCCAATCTGTGAAGGATAAGATTACTCAAAATCTGGAGAGGGATGCATATCTGCGTACCAACGAGAATTTTCATGAAACGACACCCAGTGGTCAAGATGTTGAACAACTCTGGAATGTGGCTGATCCCCTTCCACCTGCCCATCATTACTTTTTCCATGATGATCCAAAGATTCGAAAGTTAGTCTGCAGTCGCTTGCTGAATTTTTCCCCCTTGGGTGCTGTTAGTGTCGGTGGAAATCAACAGACTGGTGTATCAGTTATTGATTACATGGGTCAATTTAGCAATGGAGAAGCTTCAAAACGGACAGTGAATCGGAGACAAAATATTTCAAACATATCAAATGTTGAAGAAGTCTTGCATGGTTCTGGAAACTGGGTGAACCCAAAAGGTAAAGCTAAACAGAAAGTCGGTCAAATCAAACACTGGAACATGGAGCATGCTTCTGGAAACTGGGTGGAACCCAGAATCTCTGCCAGCAAAAAGCGGATTCAAGCAAATGCACAATCTTCTGGTGAATGGTACACACCTAGTCAAAGTGGTCAACCTAGCGGGCAAGCTGGTGGTCATTGGTATACAGGCCCTGGTGGAAGGAAGGTTTATGTTAGTAAAACTGGGCAGGAATTGACAGGTCAAACAGCCTACAGACTGTATTCAAAGGAAAGTGGGAAACGGGCTGTGAAGGCCAGAAAAGGGAAAGCCAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

463

Amino Acids

51.45

Weight (kDa)

9.04

Isoelectric Point (pI)

54.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20490
fragaria_vesca	FvH4_3g22630 FvH4_3g22630 FvH4_3g22630
malus_domestica	MD03G1201600.v1.1
prunus_persica	Prupe.4G212300_v2.0.a1 Prupe.4G212300_v2.0.a1 Prupe.4G212300_v2.0.a1
pyrus_communis	pycom03g15290 pycom03g15310
rosa_chinensis	RchiOBHm_Chr5g0039401
rosa_laevigata	RLG00000033911
rosa_multiflora	Rmu_sc0004395.1_g000010 Rmu_sc0004395.1_g000013 Rmu_sc0007310.1_g000002 Rmu_sc0007310.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040530 Rroxscaffold_1G00041820
rosa_rugosa	Rorug05G0178800 Rorug05G0178900 Rorug05G0179000
rosa_samantha	Rh5AG265400 Rh5BG269800 Rh5CG302900 Rh5DG277700 Rh5DG278000
rosa_wichuraiana	Rw5G024860 Rw5G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	661, 826
Acc36I	ACCTGC	2 cut(s)	661, 826
AccI	GTMKAC	1 cut(s)	1256
AccII	CGCG	2 cut(s)	100, 142
AclWI	GGATC	4 cut(s)	129, 491, 800, 839
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	428, 748, 883
AcuI	CTGAAG	3 cut(s)	179, 486, 615
AcyI	GRCGYC	1 cut(s)	197
AdeI	CACNNNGTG	1 cut(s)	770
AfaI	GTAC	4 cut(s)	284, 565, 739, 1205
AfiI	CCNNNNNNNGG	2 cut(s)	320, 1374
AgsI	TTSAA	7 cut(s)	215, 785, 981, 1014, 1031, 1175, 1338
AhlI	ACTAGT	1 cut(s)	557
AjnI	CCWGG	2 cut(s)	538, 1264
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	8 cut(s)	64, 74, 148, 338, 398, 977, 1079, 1241
AluI	AGCT	8 cut(s)	64, 74, 148, 338, 398, 977, 1079, 1241
Alw21I	GWGCWC	2 cut(s)	66, 150
Alw26I	GTCTC	1 cut(s)	994
AlwI	GGATC	4 cut(s)	129, 491, 800, 839
AlwNI	CAGNNNCTG	2 cut(s)	401, 1265
AoxI	GGCC	3 cut(s)	3, 1261, 1365
ApeKI	GCWGC	2 cut(s)	74, 420
ApoI	RAATTY	3 cut(s)	428, 748, 883
AspS9I	GGNCC	1 cut(s)	1262
AsuHPI	GGTGA	2 cut(s)	1072, 1208
AsuII	TTCGAA	3 cut(s)	54, 439, 856
BaeI	ACNNNNGTAYC	2 cut(s)	918, 951
BanII	GRGCYC	2 cut(s)	66, 150
Bbv12I	GWGCWC	2 cut(s)	66, 150
BbvI	GCAGC	2 cut(s)	61, 432
BccI	CCATC	2 cut(s)	363, 831
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	2 cut(s)	540, 1266
BcoDI	GTCTC	1 cut(s)	994
BcuI	ACTAGT	1 cut(s)	557
BfaI	CTAG	3 cut(s)	558, 1212, 1230
BfmI	CTRYAG	4 cut(s)	295, 582, 868, 1324
BfuAI	ACCTGC	2 cut(s)	661, 826
BisI	GCNGC	6 cut(s)	6, 75, 137, 140, 188, 421
BlsI	GCNGC	6 cut(s)	7, 76, 138, 141, 189, 422
Bme1390I	CCNGG	2 cut(s)	540, 1266
BmgT120I	GGNCC	1 cut(s)	1262
BmiI	GGNNCC	2 cut(s)	186, 1143
BmrFI	CCNGG	2 cut(s)	540, 1266
BmrI	ACTGGG	4 cut(s)	762, 1066, 1144, 1305
BmsI	GCATC	2 cut(s)	587, 715
BmuI	ACTGGG	4 cut(s)	762, 1066, 1144, 1305
BoxI	GACNNNNGTC	1 cut(s)	90
BpmI	CTGGAG	2 cut(s)	73, 737
Bpu14I	TTCGAA	3 cut(s)	54, 439, 856
BpuEI	CTTGAG	1 cut(s)	134
BsaBI	GATNNNNATC	2 cut(s)	120, 729
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	4 cut(s)	140, 538, 894, 1264
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 1374
Bse1I	ACTGG	7 cut(s)	90, 768, 934, 1061, 1112, 1139, 1300
Bse3DI	GCAATG	1 cut(s)	973
Bse8I	GATNNNNATC	2 cut(s)	120, 729
BseBI	CCWGG	2 cut(s)	540, 1266
BseDI	CCNNGG	4 cut(s)	140, 538, 894, 1264
BseGI	GGATG	4 cut(s)	290, 347, 667, 730
BseJI	GATNNNNATC	2 cut(s)	120, 729
BseLI	CCNNNNNNNGG	2 cut(s)	320, 1374
BseMI	GCAATG	1 cut(s)	973
BseNI	ACTGG	7 cut(s)	90, 768, 934, 1061, 1112, 1139, 1300
BseXI	GCAGC	2 cut(s)	61, 432
BseYI	CCCAGC	1 cut(s)	394
Bsh1236I	CGCG	2 cut(s)	100, 142
BshFI	GGCC	3 cut(s)	5, 1263, 1367
BsiHKAI	GWGCWC	2 cut(s)	66, 150
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	320, 1374
BsmAI	GTCTC	1 cut(s)	994
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	3 cut(s)	5, 1263, 1367
Bsp119I	TTCGAA	3 cut(s)	54, 439, 856
Bsp1286I	GDGCHC	2 cut(s)	66, 150
Bsp143I	GATC	5 cut(s)	121, 129, 496, 805, 844
BspANI	GGCC	3 cut(s)	5, 1263, 1367
BspFNI	CGCG	2 cut(s)	100, 142
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	2 cut(s)	186, 1143
BspMAI	CTGCAG	1 cut(s)	872
BspMI	ACCTGC	2 cut(s)	661, 826
BspPI	GGATC	4 cut(s)	129, 491, 800, 839
BspT104I	TTCGAA	3 cut(s)	54, 439, 856
BsrDI	GCAATG	1 cut(s)	973
BsrI	ACTGG	7 cut(s)	90, 768, 934, 1061, 1112, 1139, 1300
BssECI	CCNNGG	4 cut(s)	140, 538, 894, 1264
BssMI	GATC	5 cut(s)	121, 129, 496, 805, 844
BssNAI	GTATAC	1 cut(s)	1257
BssNI	GRCGYC	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	894
Bst1107I	GTATAC	1 cut(s)	1257
Bst2UI	CCWGG	2 cut(s)	540, 1266
Bst4CI	ACNGT	4 cut(s)	273, 282, 991, 1332
Bst6I	CTCTTC	3 cut(s)	222, 241, 465
BstACI	GRCGYC	1 cut(s)	197
BstBI	TTCGAA	3 cut(s)	54, 439, 856
BstC8I	GCNNGC	6 cut(s)	418, 878, 1122, 1159, 1235, 1239
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	4 cut(s)	290, 347, 667, 730
BstFNI	CGCG	2 cut(s)	100, 142
BstKTI	GATC	5 cut(s)	124, 132, 499, 808, 847
BstMAI	GTCTC	1 cut(s)	994
BstMBI	GATC	5 cut(s)	121, 129, 496, 805, 844
BstMWI	GCNNNNNNNGC	7 cut(s)	145, 154, 169, 178, 187, 196, 1364
BstNI	CCWGG	2 cut(s)	540, 1266
BstNSI	RCATGY	1 cut(s)	1124
BstPAI	GACNNNNGTC	1 cut(s)	90
BstSCI	CCNGG	2 cut(s)	538, 1264
BstSFI	CTRYAG	4 cut(s)	295, 582, 868, 1324
BstUI	CGCG	2 cut(s)	100, 142
BstV1I	GCAGC	2 cut(s)	61, 432
BstXI	CCANNNNNNTGG	1 cut(s)	362
BstZ17I	GTATAC	1 cut(s)	1257
BsuRI	GGCC	3 cut(s)	5, 1263, 1367
BtgI	CCRYGG	1 cut(s)	140
BtgZI	GCGATG	1 cut(s)	341
BtsCI	GGATG	4 cut(s)	290, 347, 667, 730
BtsIMutI	CAGTG	4 cut(s)	111, 775, 996, 1105
BveI	ACCTGC	2 cut(s)	661, 826
Cac8I	GCNNGC	6 cut(s)	418, 878, 1122, 1159, 1235, 1239
CaiI	CAGNNNCTG	2 cut(s)	401, 1265
CciI	TCATGA	1 cut(s)	754
Cfr13I	GGNCC	1 cut(s)	1262
Cfr42I	CCGCGG	1 cut(s)	143
CseI	GACGC	2 cut(s)	89, 205
Csp6I	GTAC	4 cut(s)	283, 564, 738, 1204
CviAII	CATG	6 cut(s)	755, 839, 952, 1043, 1114, 1121
CviQI	GTAC	4 cut(s)	283, 564, 738, 1204
DpnI	GATC	5 cut(s)	123, 131, 498, 807, 846
DpnII	GATC	5 cut(s)	121, 129, 496, 805, 844
DraIII	CACNNNGTG	1 cut(s)	770
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	222, 241, 465
EarI	CTCTTC	3 cut(s)	222, 241, 465
EciI	GGCGGA	1 cut(s)	69
Ecl136II	GAGCTC	2 cut(s)	64, 148
Eco130I	CCWWGG	1 cut(s)	894
Eco24I	GRGCYC	2 cut(s)	66, 150
Eco53kI	GAGCTC	2 cut(s)	64, 148
Eco57I	CTGAAG	3 cut(s)	179, 486, 615
EcoICRI	GAGCTC	2 cut(s)	64, 148
EcoO109I	RGGNCCY	1 cut(s)	1262
EcoRII	CCWGG	2 cut(s)	538, 1264
EcoT14I	CCWWGG	1 cut(s)	894
EcoT22I	ATGCAT	2 cut(s)	580, 730
EcoT38I	GRGCYC	2 cut(s)	66, 150
ErhI	CCWWGG	1 cut(s)	894
FaeI	CATG	6 cut(s)	758, 842, 955, 1046, 1117, 1124
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	6 cut(s)	754, 838, 951, 1042, 1113, 1120
FauI	CCCGC	3 cut(s)	135, 174, 1226
FblI	GTMKAC	1 cut(s)	1256
Fnu4HI	GCNGC	6 cut(s)	6, 75, 137, 140, 188, 421
FokI	GGATG	4 cut(s)	277, 334, 674, 737
FriOI	GRGCYC	2 cut(s)	66, 150
Fsp4HI	GCNGC	6 cut(s)	6, 75, 137, 140, 188, 421
FspBI	CTAG	3 cut(s)	558, 1212, 1230
GluI	GCNGC	6 cut(s)	6, 75, 137, 140, 188, 421
GsaI	CCCAGC	1 cut(s)	398
GsuI	CTGGAG	2 cut(s)	73, 737
HaeIII	GGCC	3 cut(s)	5, 1263, 1367
HapII	CCGG	1 cut(s)	173
HgaI	GACGC	2 cut(s)	89, 205
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	6 cut(s)	758, 842, 955, 1046, 1117, 1124
HincII	GTYRAC	5 cut(s)	109, 276, 447, 508, 1226
HindII	GTYRAC	5 cut(s)	109, 276, 447, 508, 1226
HindIII	AAGCTT	1 cut(s)	975
HpaI	GTTAAC	1 cut(s)	447
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	2 cut(s)	1072, 1208
Hpy166II	GTNNAC	8 cut(s)	109, 276, 447, 508, 1063, 1206, 1226, 1257
Hpy188I	TCNGA	6 cut(s)	38, 61, 388, 487, 493, 999
Hpy8I	GTNNAC	8 cut(s)	109, 276, 447, 508, 1063, 1206, 1226, 1257
Hpy99I	CGWCG	2 cut(s)	196, 199
HpyAV	CCTTC	8 cut(s)	33, 360, 510, 688, 821, 1266, 1270, 1357
HpyCH4III	ACNGT	4 cut(s)	273, 282, 991, 1332
HpyCH4V	TGCA	7 cut(s)	268, 551, 578, 728, 870, 1042, 1184
HpyF10VI	GCNNNNNNNGC	7 cut(s)	145, 154, 169, 178, 187, 196, 1364
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	6 cut(s)	758, 842, 955, 1046, 1117, 1124
KspAI	GTTAAC	1 cut(s)	447
KspI	CCGCGG	1 cut(s)	143
Kzo9I	GATC	5 cut(s)	121, 129, 496, 805, 844
LmnI	GCTCC	6 cut(s)	61, 69, 82, 145, 184, 1117
Lsp1109I	GCAGC	2 cut(s)	61, 432
LweI	GCATC	2 cut(s)	587, 715
MaeI	CTAG	3 cut(s)	558, 1212, 1230
MalI	GATC	5 cut(s)	123, 131, 498, 807, 846
MboI	GATC	5 cut(s)	121, 129, 496, 805, 844
MboII	GAAGA	8 cut(s)	227, 228, 239, 257, 452, 608, 1043, 1182
MhlI	GDGCHC	2 cut(s)	66, 150
MluCI	AATT	6 cut(s)	428, 477, 748, 883, 959, 1304
MlyI	GAGTC	3 cut(s)	33, 80, 503
MmeI	TCCRAC	2 cut(s)	375, 671
MnlI	CCTC	8 cut(s)	30, 105, 147, 158, 406, 468, 658, 714
Mph1103I	ATGCAT	2 cut(s)	580, 730
MseI	TTAA	3 cut(s)	446, 476, 639
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	2 cut(s)	74, 142
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	540, 1266
MvaI	CCWGG	2 cut(s)	540, 1266
MvnI	CGCG	2 cut(s)	100, 142
MwoI	GCNNNNNNNGC	7 cut(s)	145, 154, 169, 178, 187, 196, 1364
NdeII	GATC	5 cut(s)	121, 129, 496, 805, 844
NlaIII	CATG	6 cut(s)	758, 842, 955, 1046, 1117, 1124
NlaIV	GGNNCC	2 cut(s)	186, 1143
NsiI	ATGCAT	2 cut(s)	580, 730
NspI	RCATGY	1 cut(s)	1124
NspV	TTCGAA	3 cut(s)	54, 439, 856
OliI	CACNNNNGTG	1 cut(s)	116
PaeI	GCATGC	1 cut(s)	1124
PagI	TCATGA	1 cut(s)	754
PaqCI	CACCTGC	2 cut(s)	661, 826
PfeI	GAWTC	8 cut(s)	56, 376, 482, 488, 853, 994, 1149, 1171
PkrI	GCNGC	6 cut(s)	7, 76, 138, 141, 189, 422
PleI	GAGTC	3 cut(s)	33, 80, 503
PpsI	GAGTC	3 cut(s)	33, 80, 503
PshAI	GACNNNNGTC	1 cut(s)	90
Psp124BI	GAGCTC	2 cut(s)	66, 150
Psp6I	CCWGG	2 cut(s)	538, 1264
PspFI	CCCAGC	1 cut(s)	394
PspGI	CCWGG	2 cut(s)	538, 1264
PspN4I	GGNNCC	2 cut(s)	186, 1143
PspPI	GGNCC	1 cut(s)	1262
PstI	CTGCAG	1 cut(s)	872
PstNI	CAGNNNCTG	2 cut(s)	401, 1265
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	4 cut(s)	284, 565, 739, 1205
RsaNI	GTAC	4 cut(s)	283, 564, 738, 1204
RseI	CAYNNNNRTG	1 cut(s)	116
SacI	GAGCTC	2 cut(s)	66, 150
SacII	CCGCGG	1 cut(s)	143
SaqAI	TTAA	3 cut(s)	446, 476, 639
SatI	GCNGC	6 cut(s)	6, 75, 137, 140, 188, 421
Sau3AI	GATC	5 cut(s)	121, 129, 496, 805, 844
Sau96I	GGNCC	1 cut(s)	1262
SchI	GAGTC	3 cut(s)	33, 80, 503
ScrFI	CCNGG	2 cut(s)	540, 1266
SduI	GDGCHC	2 cut(s)	66, 150
SfaNI	GCATC	2 cut(s)	587, 715
SfcI	CTRYAG	4 cut(s)	295, 582, 868, 1324
Sfr303I	CCGCGG	1 cut(s)	143
SfuI	TTCGAA	3 cut(s)	54, 439, 856
SgrBI	CCGCGG	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SpeI	ACTAGT	1 cut(s)	557
SphI	GCATGC	1 cut(s)	1124
Sse9I	AATT	6 cut(s)	428, 477, 748, 883, 959, 1304
SspI	AATATT	2 cut(s)	211, 1009
SspMI	CTAG	3 cut(s)	558, 1212, 1230
SstI	GAGCTC	2 cut(s)	66, 150
StyD4I	CCNGG	2 cut(s)	538, 1264
StyI	CCWWGG	1 cut(s)	894
TaaI	ACNGT	4 cut(s)	273, 282, 991, 1332
TaqI	TCGA	8 cut(s)	42, 54, 124, 132, 225, 256, 439, 856
TaqII	GACCGA	1 cut(s)	1082
TasI	AATT	6 cut(s)	428, 477, 748, 883, 959, 1304
TauI	GCSGC	4 cut(s)	8, 139, 142, 190
TfiI	GAWTC	8 cut(s)	56, 376, 482, 488, 853, 994, 1149, 1171
Tru1I	TTAA	3 cut(s)	446, 476, 639
Tru9I	TTAA	3 cut(s)	446, 476, 639
TscAI	CASTG	4 cut(s)	118, 775, 996, 1112
TseI	GCWGC	2 cut(s)	74, 420
TspDTI	ATGAA	2 cut(s)	743, 771
TspGWI	ACGGA	2 cut(s)	303, 1000
TspRI	CASTG	4 cut(s)	118, 775, 996, 1112
XapI	RAATTY	3 cut(s)	428, 748, 883
XceI	RCATGY	1 cut(s)	1124
XmiI	GTMKAC	1 cut(s)	1256
XspI	CTAG	3 cut(s)	558, 1212, 1230
Zsp2I	ATGCAT	2 cut(s)	580, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.