Rh5BG269800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
33652894 .. 33656132
3239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG269800.1

Sequence Viewer

Length: 1449 bp
ATGGCCGCTGACTACGAACCTCCTTCTTTCTCTCTCGGACTCGATTTCGGGTTCGAATCGGAGCTCCAAACAGCTGCTCCGCCCGACTCCAGTCCTCCGCGTCCTGTTGACACTGATGTGGATCGAGAGATCGAGCCGCCGCGGGAGCTCAAGAGGCTGAAGCGAGGTCTGCCGGAGAAGCGGGAGCCCCCGACGACGCCGTTTTGGAATATTGAAGATGACATCGAAGAGTTCTCTTCTCCCGAAGATACTATTCCAGATGTGCAACGGTCAACACAGTACCAAACATCCTGTAGTAGTTCTAAAGTCCCGTTGCGTGGAAGTGGGGTTTTAGCTTCACAATCATCGAACCATAGCATTGGAAGGAAAATGAATCATATTTCTGCTGTCCCAGCTTCTGTGAGTTTGGAGGCAAGCCGCAAAGAATTTGTTTTTCCAAAGTTAACTACCAGCCCTCTTCGCAGGTTTCAGTTAATTGATTCAGATTCTGATGATCCTTCAGTCAGTCATAGTGTTAGTAGGGTTACTTCTAAGGTTGACTCATCATCAAAGAAGCAACACACACACCCTGGCCATTTTGCAACTACTAGTGGTACAAACAAAAATGCATCTACAAGTATGCCTGAAGATGTTGATTTGTGGAAAAACTTTAGTCCAATCAAGAAGTTTAACATTCCAACACCTGCTTTGGATGAGGTATGTCAAGAATACTTCCAATCTGTGAAGGATAAGACTACTCAAAATCTGGAGAGGGATGCATATCTGCATACCAACGAGAATTTTCATGAAACGACACCCAGTGGTCAAGGTGTTGAACAACTCTGGAATGTGGCTGATCCCCTTCCACCCGCCCATCATTACTTTTTCCACGATGATCCAAAGATTCGAAAGTTAGTCTGTAGTCGCTTGCCTAATTTTTCCCCCTTGGGTGCTGTTAGTGTCTGTGGAAATCAACAGACTGGTGTATCAGTTATTGATTACATGGGTCAATTTAGCAATGGAGAAGCTTCAAAACGGACAGTGAATCGGAGACAAAGTATTTCAAACATATCAAATGTTGAAGAAGTCTTGCATGGTTCTGGAAACTGGGTGAACCCAAAAGGTAAAGCTAAACAGAAAGGTAGCGTCAAGCGGAGTGTAAACAAGGGAAGAAATAAGTCGGTCAAATCAAACACCGGGAACATGGAGCATGCTTCTGGAAACTGGGTGGAACCCAGAATCTCTGCCAGCAAAAAGCGGATTCAAGCAAATGCACAATCTTCTGGTGAATGGTACACACCTAGTCAAAGTGGTCAAGCTGGTGGTCATTGGTATACAGGCCCTGGTGGAAGGAAGGTTTATGTTAGTAAAACTGGGCAGGAATTGACAGGTCAAACAGCCTACAGACTGTACTCAAAGGAAAGTGGGAAACGGGCTGTGAAGGCCAGAAAAGGGAAAGCCAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

482

Amino Acids

53.24

Weight (kDa)

9.31

Isoelectric Point (pI)

53.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 691
Acc36I ACCTGC 2 cut(s) 453, 691
AccI GTMKAC 1 cut(s) 1313
AccII CGCG 2 cut(s) 100, 142
AclWI GGATC 4 cut(s) 129, 488, 830, 869
AcoI YGGCCR 2 cut(s) 3, 571
AcsI RAATTY 2 cut(s) 425, 778
AcuI CTGAAG 3 cut(s) 179, 483, 645
AcyI GRCGYC 1 cut(s) 197
AdeI CACNNNGTG 1 cut(s) 800
AfaI GTAC 4 cut(s) 281, 595, 1274, 1391
AfiI CCNNNNNNNGG 2 cut(s) 317, 1431
AgsI TTSAA 6 cut(s) 215, 815, 1011, 1044, 1061, 1244
AhlI ACTAGT 1 cut(s) 587
AjnI CCWGG 2 cut(s) 568, 1321
AleI CACNNNNGTG 1 cut(s) 116
AluBI AGCT 8 cut(s) 64, 74, 148, 335, 395, 1007, 1109, 1298
AluI AGCT 8 cut(s) 64, 74, 148, 335, 395, 1007, 1109, 1298
Alw21I GWGCWC 2 cut(s) 66, 150
Alw26I GTCTC 1 cut(s) 1024
AlwI GGATC 4 cut(s) 129, 488, 830, 869
AlwNI CAGNNNCTG 3 cut(s) 398, 488, 1322
AoxI GGCC 4 cut(s) 3, 571, 1318, 1422
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 2 cut(s) 425, 778
AspS9I GGNCC 1 cut(s) 1319
AsuC2I CCSGG 1 cut(s) 1177
AsuHPI GGTGA 2 cut(s) 1102, 1277
AsuII TTCGAA 2 cut(s) 54, 886
BaeI ACNNNNGTAYC 2 cut(s) 948, 981
BalI TGGCCA 1 cut(s) 573
BanII GRGCYC 3 cut(s) 66, 150, 189
BarI GAAGNNNNNNTAC 2 cut(s) 511, 543
Bbv12I GWGCWC 2 cut(s) 66, 150
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 861
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 2 cut(s) 570, 1323
BcnI CCSGG 1 cut(s) 1177
BcoDI GTCTC 1 cut(s) 1024
BcuI ACTAGT 1 cut(s) 587
BfaI CTAG 2 cut(s) 588, 1281
BfmI CTRYAG 3 cut(s) 292, 898, 1381
BfuAI ACCTGC 2 cut(s) 453, 691
BisI GCNGC 5 cut(s) 6, 75, 137, 140, 418
BlsI GCNGC 5 cut(s) 7, 76, 138, 141, 419
Bme1390I CCNGG 3 cut(s) 570, 1177, 1323
BmgT120I GGNCC 1 cut(s) 1319
BmiI GGNNCC 2 cut(s) 186, 1212
BmrFI CCNGG 3 cut(s) 570, 1177, 1323
BmrI ACTGGG 4 cut(s) 792, 1096, 1213, 1362
BmsI GCATC 2 cut(s) 617, 745
BmuI ACTGGG 4 cut(s) 792, 1096, 1213, 1362
BoxI GACNNNNGTC 1 cut(s) 90
BpmI CTGGAG 2 cut(s) 73, 767
Bpu14I TTCGAA 2 cut(s) 54, 886
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 1177
BsaBI GATNNNNATC 2 cut(s) 120, 759
BsaHI GRCGYC 1 cut(s) 197
BsaJI CCNNGG 4 cut(s) 140, 568, 924, 1321
BsaXI ACNNNNNCTCC 4 cut(s) 61, 91, 1021, 1051
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 1431
Bse1I ACTGG 6 cut(s) 90, 798, 964, 1091, 1208, 1357
Bse3DI GCAATG 1 cut(s) 1003
Bse8I GATNNNNATC 2 cut(s) 120, 759
BseBI CCWGG 2 cut(s) 570, 1323
BseDI CCNNGG 4 cut(s) 140, 568, 924, 1321
BseGI GGATG 3 cut(s) 287, 697, 760
BseJI GATNNNNATC 2 cut(s) 120, 759
BseLI CCNNNNNNNGG 2 cut(s) 317, 1431
BseMI GCAATG 1 cut(s) 1003
BseNI ACTGG 6 cut(s) 90, 798, 964, 1091, 1208, 1357
BseXI GCAGC 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 391
Bsh1236I CGCG 2 cut(s) 100, 142
BshFI GGCC 4 cut(s) 5, 573, 1320, 1424
BsiHKAI GWGCWC 2 cut(s) 66, 150
BsiSI CCGG 2 cut(s) 173, 1176
BslFI GGGAC 2 cut(s) 293, 374
BslI CCNNNNNNNGG 2 cut(s) 317, 1431
BsmAI GTCTC 1 cut(s) 1024
BsmFI GGGAC 2 cut(s) 293, 374
BsnI GGCC 4 cut(s) 5, 573, 1320, 1424
Bsp119I TTCGAA 2 cut(s) 54, 886
Bsp1286I GDGCHC 3 cut(s) 66, 150, 189
Bsp143I GATC 5 cut(s) 121, 129, 493, 835, 874
BspANI GGCC 4 cut(s) 5, 573, 1320, 1424
BspFNI CGCG 2 cut(s) 100, 142
BspHI TCATGA 1 cut(s) 784
BspLI GGNNCC 2 cut(s) 186, 1212
BspMI ACCTGC 2 cut(s) 453, 691
BspPI GGATC 4 cut(s) 129, 488, 830, 869
BspT104I TTCGAA 2 cut(s) 54, 886
BsrDI GCAATG 1 cut(s) 1003
BsrI ACTGG 6 cut(s) 90, 798, 964, 1091, 1208, 1357
BssECI CCNNGG 4 cut(s) 140, 568, 924, 1321
BssMI GATC 5 cut(s) 121, 129, 493, 835, 874
BssNAI GTATAC 1 cut(s) 1314
BssNI GRCGYC 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 924
Bst1107I GTATAC 1 cut(s) 1314
Bst2UI CCWGG 2 cut(s) 570, 1323
Bst4CI ACNGT 4 cut(s) 270, 279, 1021, 1389
Bst6I CTCTTC 3 cut(s) 222, 241, 462
BstACI GRCGYC 1 cut(s) 197
BstBI TTCGAA 2 cut(s) 54, 886
BstC8I GCNNGC 4 cut(s) 415, 908, 1191, 1228
BstDEI CTNAG 1 cut(s) 531
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 3 cut(s) 287, 697, 760
BstFNI CGCG 2 cut(s) 100, 142
BstKTI GATC 5 cut(s) 124, 132, 496, 838, 877
BstMAI GTCTC 1 cut(s) 1024
BstMBI GATC 5 cut(s) 121, 129, 493, 835, 874
BstMWI GCNNNNNNNGC 7 cut(s) 145, 154, 169, 178, 392, 459, 1421
BstNI CCWGG 2 cut(s) 570, 1323
BstNSI RCATGY 1 cut(s) 1193
BstPAI GACNNNNGTC 1 cut(s) 90
BstSCI CCNGG 3 cut(s) 568, 1175, 1321
BstSFI CTRYAG 3 cut(s) 292, 898, 1381
BstUI CGCG 2 cut(s) 100, 142
BstV1I GCAGC 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 359
BstZ17I GTATAC 1 cut(s) 1314
BsuRI GGCC 4 cut(s) 5, 573, 1320, 1424
BtgI CCRYGG 1 cut(s) 140
BtsCI GGATG 3 cut(s) 287, 697, 760
BtsIMutI CAGTG 3 cut(s) 111, 805, 1026
BveI ACCTGC 2 cut(s) 453, 691
Cac8I GCNNGC 4 cut(s) 415, 908, 1191, 1228
CaiI CAGNNNCTG 3 cut(s) 398, 488, 1322
CciI TCATGA 1 cut(s) 784
Cfr13I GGNCC 1 cut(s) 1319
Cfr42I CCGCGG 1 cut(s) 143
CseI GACGC 3 cut(s) 89, 205, 1114
Csp6I GTAC 4 cut(s) 280, 594, 1273, 1390
CviAII CATG 5 cut(s) 785, 982, 1073, 1183, 1190
CviQI GTAC 4 cut(s) 280, 594, 1273, 1390
DdeI CTNAG 1 cut(s) 531
DpnI GATC 5 cut(s) 123, 131, 495, 837, 876
DpnII GATC 5 cut(s) 121, 129, 493, 835, 874
DraIII CACNNNGTG 1 cut(s) 800
EaeI YGGCCR 2 cut(s) 3, 571
Eam1104I CTCTTC 3 cut(s) 222, 241, 462
EarI CTCTTC 3 cut(s) 222, 241, 462
EciI GGCGGA 1 cut(s) 69
Ecl136II GAGCTC 2 cut(s) 64, 148
Eco130I CCWWGG 1 cut(s) 924
Eco24I GRGCYC 3 cut(s) 66, 150, 189
Eco53kI GAGCTC 2 cut(s) 64, 148
Eco57I CTGAAG 3 cut(s) 179, 483, 645
EcoICRI GAGCTC 2 cut(s) 64, 148
EcoO109I RGGNCCY 1 cut(s) 1319
EcoRII CCWGG 2 cut(s) 568, 1321
EcoT14I CCWWGG 1 cut(s) 924
EcoT22I ATGCAT 2 cut(s) 610, 760
EcoT38I GRGCYC 3 cut(s) 66, 150, 189
ErhI CCWWGG 1 cut(s) 924
FaeI CATG 5 cut(s) 788, 985, 1076, 1186, 1193
FaqI GGGAC 2 cut(s) 293, 374
FatI CATG 5 cut(s) 784, 981, 1072, 1182, 1189
FauI CCCGC 3 cut(s) 135, 174, 856
FblI GTMKAC 1 cut(s) 1313
Fnu4HI GCNGC 5 cut(s) 6, 75, 137, 140, 418
FokI GGATG 3 cut(s) 274, 704, 767
FriOI GRGCYC 3 cut(s) 66, 150, 189
Fsp4HI GCNGC 5 cut(s) 6, 75, 137, 140, 418
FspBI CTAG 2 cut(s) 588, 1281
GluI GCNGC 5 cut(s) 6, 75, 137, 140, 418
GsaI CCCAGC 1 cut(s) 395
GsuI CTGGAG 2 cut(s) 73, 767
HaeIII GGCC 4 cut(s) 5, 573, 1320, 1424
HapII CCGG 2 cut(s) 173, 1176
HgaI GACGC 3 cut(s) 89, 205, 1114
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 5 cut(s) 788, 985, 1076, 1186, 1193
HincII GTYRAC 4 cut(s) 109, 273, 444, 538
HindII GTYRAC 4 cut(s) 109, 273, 444, 538
HindIII AAGCTT 1 cut(s) 1005
HpaI GTTAAC 1 cut(s) 444
HpaII CCGG 2 cut(s) 173, 1176
HphI GGTGA 2 cut(s) 1102, 1277
Hpy166II GTNNAC 8 cut(s) 109, 273, 444, 538, 1093, 1141, 1275, 1314
Hpy188I TCNGA 5 cut(s) 38, 61, 484, 490, 1029
Hpy8I GTNNAC 8 cut(s) 109, 273, 444, 538, 1093, 1141, 1275, 1314
Hpy99I CGWCG 2 cut(s) 196, 199
HpyAV CCTTC 8 cut(s) 33, 357, 507, 718, 851, 1323, 1327, 1414
HpyCH4III ACNGT 4 cut(s) 270, 279, 1021, 1389
HpyCH4V TGCA 7 cut(s) 265, 581, 608, 758, 766, 1072, 1253
HpyF10VI GCNNNNNNNGC 7 cut(s) 145, 154, 169, 178, 392, 459, 1421
HpyF3I CTNAG 1 cut(s) 531
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 5 cut(s) 788, 985, 1076, 1186, 1193
KspAI GTTAAC 1 cut(s) 444
KspI CCGCGG 1 cut(s) 143
Kzo9I GATC 5 cut(s) 121, 129, 493, 835, 874
LmnI GCTCC 6 cut(s) 61, 69, 82, 145, 184, 1186
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 2 cut(s) 617, 745
MaeI CTAG 2 cut(s) 588, 1281
MaeIII GTNAC 1 cut(s) 523
MalI GATC 5 cut(s) 123, 131, 495, 837, 876
MboI GATC 5 cut(s) 121, 129, 493, 835, 874
MboII GAAGA 9 cut(s) 227, 228, 239, 257, 449, 638, 1073, 1161, 1251
MhlI GDGCHC 3 cut(s) 66, 150, 189
MlsI TGGCCA 1 cut(s) 573
MluCI AATT 6 cut(s) 425, 474, 778, 913, 989, 1361
MluNI TGGCCA 1 cut(s) 573
MlyI GAGTC 3 cut(s) 33, 80, 533
MmeI TCCRAC 1 cut(s) 701
MnlI CCTC 8 cut(s) 30, 105, 147, 158, 403, 465, 688, 744
Mox20I TGGCCA 1 cut(s) 573
Mph1103I ATGCAT 2 cut(s) 610, 760
MscI TGGCCA 1 cut(s) 573
MseI TTAA 3 cut(s) 443, 473, 669
MslI CAYNNNNRTG 1 cut(s) 116
Msp20I TGGCCA 1 cut(s) 573
MspA1I CMGCKG 3 cut(s) 8, 74, 142
MspI CCGG 2 cut(s) 173, 1176
MspR9I CCNGG 3 cut(s) 570, 1177, 1323
MvaI CCWGG 2 cut(s) 570, 1323
MvnI CGCG 2 cut(s) 100, 142
MwoI GCNNNNNNNGC 7 cut(s) 145, 154, 169, 178, 392, 459, 1421
NciI CCSGG 1 cut(s) 1177
NdeII GATC 5 cut(s) 121, 129, 493, 835, 874
NlaIII CATG 5 cut(s) 788, 985, 1076, 1186, 1193
NlaIV GGNNCC 2 cut(s) 186, 1212
NsiI ATGCAT 2 cut(s) 610, 760
NspI RCATGY 1 cut(s) 1193
NspV TTCGAA 2 cut(s) 54, 886
OliI CACNNNNGTG 1 cut(s) 116
PaeI GCATGC 1 cut(s) 1193
PagI TCATGA 1 cut(s) 784
PaqCI CACCTGC 1 cut(s) 691
PfeI GAWTC 8 cut(s) 56, 373, 479, 485, 883, 1024, 1218, 1240
PkrI GCNGC 5 cut(s) 7, 76, 138, 141, 419
PleI GAGTC 3 cut(s) 33, 80, 533
PpsI GAGTC 3 cut(s) 33, 80, 533
PshAI GACNNNNGTC 1 cut(s) 90
Psp124BI GAGCTC 2 cut(s) 66, 150
Psp6I CCWGG 2 cut(s) 568, 1321
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 2 cut(s) 568, 1321
PspN4I GGNNCC 2 cut(s) 186, 1212
PspPI GGNCC 1 cut(s) 1319
PstNI CAGNNNCTG 3 cut(s) 398, 488, 1322
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 4 cut(s) 281, 595, 1274, 1391
RsaNI GTAC 4 cut(s) 280, 594, 1273, 1390
RseI CAYNNNNRTG 1 cut(s) 116
SacI GAGCTC 2 cut(s) 66, 150
SacII CCGCGG 1 cut(s) 143
SaqAI TTAA 3 cut(s) 443, 473, 669
SatI GCNGC 5 cut(s) 6, 75, 137, 140, 418
Sau3AI GATC 5 cut(s) 121, 129, 493, 835, 874
Sau96I GGNCC 1 cut(s) 1319
SchI GAGTC 3 cut(s) 33, 80, 533
ScrFI CCNGG 3 cut(s) 570, 1177, 1323
SduI GDGCHC 3 cut(s) 66, 150, 189
SfaNI GCATC 2 cut(s) 617, 745
SfcI CTRYAG 3 cut(s) 292, 898, 1381
Sfr303I CCGCGG 1 cut(s) 143
SfuI TTCGAA 2 cut(s) 54, 886
SgrBI CCGCGG 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SpeI ACTAGT 1 cut(s) 587
SphI GCATGC 1 cut(s) 1193
Sse9I AATT 6 cut(s) 425, 474, 778, 913, 989, 1361
SspI AATATT 1 cut(s) 211
SspMI CTAG 2 cut(s) 588, 1281
SstI GAGCTC 2 cut(s) 66, 150
StyD4I CCNGG 3 cut(s) 568, 1175, 1321
StyI CCWWGG 1 cut(s) 924
TaaI ACNGT 4 cut(s) 270, 279, 1021, 1389
TaqI TCGA 7 cut(s) 42, 54, 124, 132, 225, 347, 886
TaqII GACCGA 1 cut(s) 1150
TasI AATT 6 cut(s) 425, 474, 778, 913, 989, 1361
TatI WGTACW 1 cut(s) 1389
TauI GCSGC 4 cut(s) 8, 139, 142, 420
TfiI GAWTC 8 cut(s) 56, 373, 479, 485, 883, 1024, 1218, 1240
Tru1I TTAA 3 cut(s) 443, 473, 669
Tru9I TTAA 3 cut(s) 443, 473, 669
TscAI CASTG 3 cut(s) 118, 805, 1026
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 3 cut(s) 386, 773, 801
TspGWI ACGGA 1 cut(s) 1030
TspRI CASTG 3 cut(s) 118, 805, 1026
XapI RAATTY 2 cut(s) 425, 778
XceI RCATGY 1 cut(s) 1193
XmiI GTMKAC 1 cut(s) 1313
XspI CTAG 2 cut(s) 588, 1281
Zsp2I ATGCAT 2 cut(s) 610, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.