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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G20490 |
| fragaria_vesca | FvH4_3g22630 FvH4_3g22630 FvH4_3g22630 |
| malus_domestica | MD03G1201600.v1.1 |
| prunus_persica | Prupe.4G212300_v2.0.a1 Prupe.4G212300_v2.0.a1 Prupe.4G212300_v2.0.a1 |
| pyrus_communis | pycom03g15290 pycom03g15310 |
| rosa_chinensis | RchiOBHm_Chr5g0039401 |
| rosa_laevigata | RLG00000033911 |
| rosa_multiflora | Rmu_sc0004395.1_g000010 Rmu_sc0004395.1_g000013 Rmu_sc0007310.1_g000002 Rmu_sc0007310.1_g000008 |
| rosa_roxburghii | Rroxscaffold_1G00040530 Rroxscaffold_1G00041820 |
| rosa_rugosa | Rorug05G0178800 Rorug05G0178900 Rorug05G0179000 |
| rosa_samantha | Rh5AG265400 Rh5BG269800 Rh5CG302900 Rh5DG277700 Rh5DG278000 |
| rosa_wichuraiana | Rw5G024860 Rw5G024880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 760, 925 |
| AatII | GACGTC | 1 cut(s) | 456 |
| Acc36I | ACCTGC | 3 cut(s) | 451, 760, 925 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 383, 424 |
| AccI | GTMKAC | 3 cut(s) | 832, 1367, 1406 |
| AccII | CGCG | 3 cut(s) | 117, 257, 791 |
| AccIII | TCCGGA | 3 cut(s) | 178, 304, 1172 |
| AciI | CCGC | 9 cut(s) | 93, 117, 208, 220, 247, 255, 484, 789, 1330 |
| AclWI | GGATC | 8 cut(s) | 176, 189, 367, 554, 599, 711, 899, 938 |
| AcoI | YGGCCR | 3 cut(s) | 3, 335, 1396 |
| AcsI | RAATTY | 4 cut(s) | 776, 846, 1098, 1264 |
| AcuI | CTGAAG | 3 cut(s) | 263, 432, 549 |
| AcyI | GRCGYC | 2 cut(s) | 260, 453 |
| AfaI | GTAC | 2 cut(s) | 652, 1324 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 116, 191, 383, 424, 689, 1179, 1557 |
| AflIII | ACRYGT | 1 cut(s) | 863 |
| AgsI | TTSAA | 7 cut(s) | 369, 631, 854, 884, 1077, 1154, 1337 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 516 |
| AhlI | ACTAGT | 1 cut(s) | 653 |
| AjnI | CCWGG | 1 cut(s) | 1414 |
| AluBI | AGCT | 8 cut(s) | 61, 71, 101, 461, 1073, 1116, 1230, 1391 |
| AluI | AGCT | 8 cut(s) | 61, 71, 101, 461, 1073, 1116, 1230, 1391 |
| Alw21I | GWGCWC | 3 cut(s) | 63, 1232, 1504 |
| Alw26I | GTCTC | 1 cut(s) | 460 |
| AlwI | GGATC | 8 cut(s) | 176, 189, 367, 554, 599, 711, 899, 938 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 464 |
| Ama87I | CYCGRG | 1 cut(s) | 32 |
| Aor13HI | TCCGGA | 3 cut(s) | 178, 304, 1172 |
| AoxI | GGCC | 7 cut(s) | 3, 161, 194, 209, 335, 1396, 1411 |
| ApaI | GGGCCC | 1 cut(s) | 198 |
| ApeKI | GCWGC | 4 cut(s) | 71, 1202, 1391, 1469 |
| ApoI | RAATTY | 4 cut(s) | 776, 846, 1098, 1264 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 160, 192 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 716, 849 |
| AspLEI | GCGC | 1 cut(s) | 117 |
| AspS9I | GGNCC | 6 cut(s) | 79, 161, 176, 194, 195, 1412 |
| AsuHPI | GGTGA | 2 cut(s) | 707, 1094 |
| AsuII | TTCGAA | 1 cut(s) | 526 |
| AvaI | CYCGRG | 1 cut(s) | 32 |
| AvaII | GGWCC | 2 cut(s) | 79, 176 |
| BaeGI | GKGCMC | 1 cut(s) | 198 |
| BalI | TGGCCA | 1 cut(s) | 1398 |
| BamHI | GGATCC | 1 cut(s) | 181 |
| BanII | GRGCYC | 4 cut(s) | 63, 198, 255, 1232 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1146, 1178 |
| Bbv12I | GWGCWC | 3 cut(s) | 63, 1232, 1504 |
| BbvI | GCAGC | 4 cut(s) | 58, 1214, 1378, 1481 |
| BccI | CCATC | 2 cut(s) | 616, 683 |
| BciT130I | CCWGG | 1 cut(s) | 1416 |
| BcoDI | GTCTC | 1 cut(s) | 460 |
| BcuI | ACTAGT | 1 cut(s) | 653 |
| BfaI | CTAG | 2 cut(s) | 654, 1374 |
| BfuAI | ACCTGC | 3 cut(s) | 451, 760, 925 |
| BisI | GCNGC | 7 cut(s) | 72, 118, 209, 221, 1203, 1392, 1470 |
| BlpI | GCTNAGC | 1 cut(s) | 1465 |
| BlsI | GCNGC | 7 cut(s) | 73, 119, 210, 222, 1204, 1393, 1471 |
| BmcAI | AGTACT | 1 cut(s) | 652 |
| Bme1390I | CCNGG | 1 cut(s) | 1416 |
| Bme18I | GGWCC | 2 cut(s) | 79, 176 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 516 |
| BmeT110I | CYCGRG | 1 cut(s) | 32 |
| BmgT120I | GGNCC | 6 cut(s) | 79, 161, 176, 194, 195, 1412 |
| BmiI | GGNNCC | 8 cut(s) | 121, 183, 196, 197, 252, 533, 1305, 1549 |
| BmrFI | CCNGG | 1 cut(s) | 1416 |
| BmrI | ACTGGG | 2 cut(s) | 1306, 1455 |
| BmsI | GCATC | 2 cut(s) | 115, 316 |
| BmuI | ACTGGG | 2 cut(s) | 1306, 1455 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 37 |
| BpmI | CTGGAG | 1 cut(s) | 87 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1465 |
| Bpu14I | TTCGAA | 1 cut(s) | 526 |
| BpuEI | CTTGAG | 4 cut(s) | 200, 209, 669, 1216 |
| BsaBI | GATNNNNATC | 2 cut(s) | 330, 702 |
| BsaHI | GRCGYC | 2 cut(s) | 260, 453 |
| BsaJI | CCNNGG | 5 cut(s) | 75, 110, 487, 571, 1414 |
| BsaWI | WCCGGW | 3 cut(s) | 178, 304, 1172 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 116, 191, 383, 424, 689, 1179, 1557 |
| Bse3DI | GCAATG | 2 cut(s) | 604, 1321 |
| Bse8I | GATNNNNATC | 2 cut(s) | 330, 702 |
| BseAI | TCCGGA | 3 cut(s) | 178, 304, 1172 |
| BseBI | CCWGG | 1 cut(s) | 1416 |
| BseDI | CCNNGG | 5 cut(s) | 75, 110, 487, 571, 1414 |
| BseGI | GGATG | 4 cut(s) | 410, 608, 766, 1188 |
| BseJI | GATNNNNATC | 2 cut(s) | 330, 702 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 116, 191, 383, 424, 689, 1179, 1557 |
| BseMI | GCAATG | 2 cut(s) | 604, 1321 |
| BseMII | CTCAG | 3 cut(s) | 471, 821, 1479 |
| BseRI | GAGGAG | 1 cut(s) | 1138 |
| BseSI | GKGCMC | 1 cut(s) | 198 |
| BseXI | GCAGC | 4 cut(s) | 58, 1214, 1378, 1481 |
| Bsh1236I | CGCG | 3 cut(s) | 117, 257, 791 |
| BshFI | GGCC | 7 cut(s) | 5, 163, 196, 211, 337, 1398, 1413 |
| BsiHKAI | GWGCWC | 3 cut(s) | 63, 1232, 1504 |
| BsiHKCI | CYCGRG | 1 cut(s) | 32 |
| BsiSI | CCGG | 3 cut(s) | 179, 305, 1173 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 116, 191, 383, 424, 689, 1179, 1557 |
| BsmAI | GTCTC | 1 cut(s) | 460 |
| BsmBI | CGTCTC | 1 cut(s) | 460 |
| BsmI | GAATGC | 1 cut(s) | 741 |
| BsnI | GGCC | 7 cut(s) | 5, 163, 196, 211, 337, 1398, 1413 |
| BsoBI | CYCGRG | 1 cut(s) | 32 |
| Bsp119I | TTCGAA | 1 cut(s) | 526 |
| Bsp120I | GGGCCC | 1 cut(s) | 194 |
| Bsp1286I | GDGCHC | 5 cut(s) | 63, 198, 255, 1232, 1504 |
| Bsp13I | TCCGGA | 3 cut(s) | 178, 304, 1172 |
| Bsp143I | GATC | 9 cut(s) | 40, 156, 181, 372, 559, 604, 703, 904, 943 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1465 |
| BspACI | CCGC | 9 cut(s) | 93, 117, 208, 220, 247, 255, 484, 789, 1330 |
| BspANI | GGCC | 7 cut(s) | 5, 163, 196, 211, 337, 1398, 1413 |
| BspCNI | CTCAG | 3 cut(s) | 470, 820, 1478 |
| BspEI | TCCGGA | 3 cut(s) | 178, 304, 1172 |
| BspFNI | CGCG | 3 cut(s) | 117, 257, 791 |
| BspLI | GGNNCC | 8 cut(s) | 121, 183, 196, 197, 252, 533, 1305, 1549 |
| BspMI | ACCTGC | 3 cut(s) | 451, 760, 925 |
| BspPI | GGATC | 8 cut(s) | 176, 189, 367, 554, 599, 711, 899, 938 |
| BspT104I | TTCGAA | 1 cut(s) | 526 |
| BsrDI | GCAATG | 2 cut(s) | 604, 1321 |
| BssECI | CCNNGG | 5 cut(s) | 75, 110, 487, 571, 1414 |
| BssMI | GATC | 9 cut(s) | 40, 156, 181, 372, 559, 604, 703, 904, 943 |
| BssNAI | GTATAC | 1 cut(s) | 1407 |
| BssNI | GRCGYC | 2 cut(s) | 260, 453 |
| BssT1I | CCWWGG | 2 cut(s) | 110, 487 |
| Bst1107I | GTATAC | 1 cut(s) | 1407 |
| Bst2UI | CCWGG | 1 cut(s) | 1416 |
| Bst4CI | ACNGT | 3 cut(s) | 355, 1482, 1506 |
| Bst6I | CTCTTC | 6 cut(s) | 147, 285, 304, 528, 915, 1550 |
| BstACI | GRCGYC | 2 cut(s) | 260, 453 |
| BstBI | TTCGAA | 1 cut(s) | 526 |
| BstC8I | GCNNGC | 4 cut(s) | 255, 1280, 1389, 1396 |
| BstDEI | CTNAG | 4 cut(s) | 457, 807, 1119, 1465 |
| BstDSI | CCRYGG | 2 cut(s) | 75, 571 |
| BstF5I | GGATG | 4 cut(s) | 410, 608, 766, 1188 |
| BstFNI | CGCG | 3 cut(s) | 117, 257, 791 |
| BstHHI | GCGC | 1 cut(s) | 117 |
| BstKTI | GATC | 9 cut(s) | 43, 159, 184, 375, 562, 607, 706, 907, 946 |
| BstMAI | GTCTC | 1 cut(s) | 460 |
| BstMBI | GATC | 9 cut(s) | 40, 156, 181, 372, 559, 604, 703, 904, 943 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 217, 226, 259 |
| BstNI | CCWGG | 1 cut(s) | 1416 |
| BstNSI | RCATGY | 2 cut(s) | 867, 1169 |
| BstSCI | CCNGG | 1 cut(s) | 1414 |
| BstSLI | GKGCMC | 1 cut(s) | 198 |
| BstUI | CGCG | 3 cut(s) | 117, 257, 791 |
| BstV1I | GCAGC | 4 cut(s) | 58, 1214, 1378, 1481 |
| BstX2I | RGATCY | 3 cut(s) | 181, 372, 703 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 111 |
| BstYI | RGATCY | 3 cut(s) | 181, 372, 703 |
| BstZ17I | GTATAC | 1 cut(s) | 1407 |
| BsuRI | GGCC | 7 cut(s) | 5, 163, 196, 211, 337, 1398, 1413 |
| BtgI | CCRYGG | 2 cut(s) | 75, 571 |
| BtsCI | GGATG | 4 cut(s) | 410, 608, 766, 1188 |
| BtsIMutI | CAGTG | 3 cut(s) | 171, 210, 684 |
| BveI | ACCTGC | 3 cut(s) | 451, 760, 925 |
| Cac8I | GCNNGC | 4 cut(s) | 255, 1280, 1389, 1396 |
| CaiI | CAGNNNCTG | 1 cut(s) | 464 |
| CfoI | GCGC | 1 cut(s) | 117 |
| Cfr13I | GGNCC | 6 cut(s) | 79, 161, 176, 194, 195, 1412 |
| CseI | GACGC | 2 cut(s) | 268, 859 |
| Csp6I | GTAC | 2 cut(s) | 651, 1323 |
| CviAII | CATG | 7 cut(s) | 383, 424, 828, 864, 938, 1048, 1166 |
| CviQI | GTAC | 2 cut(s) | 651, 1323 |
| DdeI | CTNAG | 4 cut(s) | 457, 807, 1119, 1465 |
| DpnI | GATC | 9 cut(s) | 42, 158, 183, 374, 561, 606, 705, 906, 945 |
| DpnII | GATC | 9 cut(s) | 40, 156, 181, 372, 559, 604, 703, 904, 943 |
| DriI | GACNNNNNGTC | 1 cut(s) | 516 |
| EaeI | YGGCCR | 3 cut(s) | 3, 335, 1396 |
| Eam1104I | CTCTTC | 6 cut(s) | 147, 285, 304, 528, 915, 1550 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 516 |
| EarI | CTCTTC | 6 cut(s) | 147, 285, 304, 528, 915, 1550 |
| Ecl136II | GAGCTC | 2 cut(s) | 61, 1230 |
| Eco130I | CCWWGG | 2 cut(s) | 110, 487 |
| Eco24I | GRGCYC | 4 cut(s) | 63, 198, 255, 1232 |
| Eco32I | GATATC | 1 cut(s) | 286 |
| Eco47I | GGWCC | 2 cut(s) | 79, 176 |
| Eco53kI | GAGCTC | 2 cut(s) | 61, 1230 |
| Eco57I | CTGAAG | 3 cut(s) | 263, 432, 549 |
| Eco88I | CYCGRG | 1 cut(s) | 32 |
| EcoICRI | GAGCTC | 2 cut(s) | 61, 1230 |
| EcoO109I | RGGNCCY | 1 cut(s) | 195 |
| EcoRII | CCWGG | 1 cut(s) | 1414 |
| EcoRV | GATATC | 1 cut(s) | 286 |
| EcoT14I | CCWWGG | 2 cut(s) | 110, 487 |
| EcoT22I | ATGCAT | 1 cut(s) | 331 |
| EcoT38I | GRGCYC | 4 cut(s) | 63, 198, 255, 1232 |
| ErhI | CCWWGG | 2 cut(s) | 110, 487 |
| Esp3I | CGTCTC | 1 cut(s) | 460 |
| FaeI | CATG | 7 cut(s) | 386, 427, 831, 867, 941, 1051, 1169 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 611, 643 |
| FatI | CATG | 7 cut(s) | 382, 423, 827, 863, 937, 1047, 1165 |
| FauI | CCCGC | 3 cut(s) | 100, 240, 262 |
| FblI | GTMKAC | 3 cut(s) | 832, 1367, 1406 |
| Fnu4HI | GCNGC | 7 cut(s) | 72, 118, 209, 221, 1203, 1392, 1470 |
| FokI | GGATG | 4 cut(s) | 397, 595, 773, 1195 |
| FriOI | GRGCYC | 4 cut(s) | 63, 198, 255, 1232 |
| Fsp4HI | GCNGC | 7 cut(s) | 72, 118, 209, 221, 1203, 1392, 1470 |
| FspBI | CTAG | 2 cut(s) | 654, 1374 |
| GlaI | GCGC | 1 cut(s) | 116 |
| GluI | GCNGC | 7 cut(s) | 72, 118, 209, 221, 1203, 1392, 1470 |
| GsuI | CTGGAG | 1 cut(s) | 87 |
| HaeIII | GGCC | 7 cut(s) | 5, 163, 196, 211, 337, 1398, 1413 |
| HapII | CCGG | 3 cut(s) | 179, 305, 1173 |
| HgaI | GACGC | 2 cut(s) | 268, 859 |
| HhaI | GCGC | 1 cut(s) | 117 |
| Hin1I | GRCGYC | 2 cut(s) | 260, 453 |
| Hin1II | CATG | 7 cut(s) | 386, 427, 831, 867, 941, 1051, 1169 |
| Hin6I | GCGC | 1 cut(s) | 115 |
| HinP1I | GCGC | 1 cut(s) | 115 |
| HincII | GTYRAC | 1 cut(s) | 510 |
| HindII | GTYRAC | 1 cut(s) | 510 |
| HindIII | AAGCTT | 1 cut(s) | 1071 |
| HinfI | GANTC | 8 cut(s) | 53, 265, 545, 551, 824, 1090, 1186, 1333 |
| HpaII | CCGG | 3 cut(s) | 179, 305, 1173 |
| HphI | GGTGA | 2 cut(s) | 707, 1094 |
| Hpy166II | GTNNAC | 4 cut(s) | 510, 833, 1368, 1407 |
| Hpy8I | GTNNAC | 4 cut(s) | 510, 833, 1368, 1407 |
| Hpy99I | CGWCG | 1 cut(s) | 262 |
| HpyAV | CCTTC | 9 cut(s) | 423, 522, 573, 787, 1151, 1362, 1416, 1420, 1483 |
| HpyCH4III | ACNGT | 3 cut(s) | 355, 1482, 1506 |
| HpyCH4IV | ACGT | 2 cut(s) | 144, 453 |
| HpyCH4V | TGCA | 6 cut(s) | 329, 597, 647, 969, 1346, 1379 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 217, 226, 259 |
| HpyF3I | CTNAG | 4 cut(s) | 457, 807, 1119, 1465 |
| HpySE526I | ACGT | 2 cut(s) | 144, 453 |
| Hsp92I | GRCGYC | 2 cut(s) | 260, 453 |
| Hsp92II | CATG | 7 cut(s) | 386, 427, 831, 867, 941, 1051, 1169 |
| HspAI | GCGC | 1 cut(s) | 115 |
| Kpn2I | TCCGGA | 3 cut(s) | 178, 304, 1172 |
| Kzo9I | GATC | 9 cut(s) | 40, 156, 181, 372, 559, 604, 703, 904, 943 |
| LmnI | GCTCC | 7 cut(s) | 58, 66, 106, 125, 250, 582, 1499 |
| Lsp1109I | GCAGC | 4 cut(s) | 58, 1214, 1378, 1481 |
| LweI | GCATC | 2 cut(s) | 115, 316 |
| MaeI | CTAG | 2 cut(s) | 654, 1374 |
| MaeII | ACGT | 2 cut(s) | 144, 453 |
| MaeIII | GTNAC | 2 cut(s) | 589, 1456 |
| MalI | GATC | 9 cut(s) | 42, 158, 183, 374, 561, 606, 705, 906, 945 |
| MboI | GATC | 9 cut(s) | 40, 156, 181, 372, 559, 604, 703, 904, 943 |
| MboII | GAAGA | 8 cut(s) | 164, 291, 302, 320, 515, 679, 902, 1166 |
| MflI | RGATCY | 3 cut(s) | 181, 372, 703 |
| MhlI | GDGCHC | 5 cut(s) | 63, 198, 255, 1232, 1504 |
| MlsI | TGGCCA | 1 cut(s) | 1398 |
| MluNI | TGGCCA | 1 cut(s) | 1398 |
| MmeI | TCCRAC | 1 cut(s) | 770 |
| Mox20I | TGGCCA | 1 cut(s) | 1398 |
| Mph1103I | ATGCAT | 1 cut(s) | 331 |
| MroI | TCCGGA | 3 cut(s) | 178, 304, 1172 |
| MroXI | GAANNNNTTC | 2 cut(s) | 716, 849 |
| MscI | TGGCCA | 1 cut(s) | 1398 |
| MseI | TTAA | 4 cut(s) | 132, 398, 539, 1002 |
| MslI | CAYNNNNRTG | 2 cut(s) | 387, 840 |
| Msp20I | TGGCCA | 1 cut(s) | 1398 |
| MspA1I | CMGCKG | 1 cut(s) | 71 |
| MspI | CCGG | 3 cut(s) | 179, 305, 1173 |
| MspR9I | CCNGG | 1 cut(s) | 1416 |
| Mva1269I | GAATGC | 1 cut(s) | 741 |
| MvaI | CCWGG | 1 cut(s) | 1416 |
| MvnI | CGCG | 3 cut(s) | 117, 257, 791 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 217, 226, 259 |
| NdeII | GATC | 9 cut(s) | 40, 156, 181, 372, 559, 604, 703, 904, 943 |
| NlaIII | CATG | 7 cut(s) | 386, 427, 831, 867, 941, 1051, 1169 |
| NlaIV | GGNNCC | 8 cut(s) | 121, 183, 196, 197, 252, 533, 1305, 1549 |
| NmuCI | GTSAC | 1 cut(s) | 1456 |
| NsiI | ATGCAT | 1 cut(s) | 331 |
| NspI | RCATGY | 2 cut(s) | 867, 1169 |
| NspV | TTCGAA | 1 cut(s) | 526 |
| PaqCI | CACCTGC | 2 cut(s) | 760, 925 |
| PciI | ACATGT | 1 cut(s) | 863 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 285 |
| PctI | GAATGC | 1 cut(s) | 741 |
| PdmI | GAANNNNTTC | 2 cut(s) | 716, 849 |
| PfeI | GAWTC | 8 cut(s) | 53, 265, 545, 551, 824, 1090, 1186, 1333 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 383, 424 |
| PkrI | GCNGC | 7 cut(s) | 73, 119, 210, 222, 1204, 1393, 1471 |
| PscI | ACATGT | 1 cut(s) | 863 |
| Psp124BI | GAGCTC | 2 cut(s) | 63, 1232 |
| Psp6I | CCWGG | 1 cut(s) | 1414 |
| PspGI | CCWGG | 1 cut(s) | 1414 |
| PspN4I | GGNNCC | 8 cut(s) | 121, 183, 196, 197, 252, 533, 1305, 1549 |
| PspOMI | GGGCCC | 1 cut(s) | 194 |
| PspPI | GGNCC | 6 cut(s) | 79, 161, 176, 194, 195, 1412 |
| PstNI | CAGNNNCTG | 1 cut(s) | 464 |
| PsuI | RGATCY | 3 cut(s) | 181, 372, 703 |
| PvuII | CAGCTG | 1 cut(s) | 71 |
| RsaI | GTAC | 2 cut(s) | 652, 1324 |
| RsaNI | GTAC | 2 cut(s) | 651, 1323 |
| RseI | CAYNNNNRTG | 2 cut(s) | 387, 840 |
| SacI | GAGCTC | 2 cut(s) | 63, 1232 |
| SaqAI | TTAA | 4 cut(s) | 132, 398, 539, 1002 |
| SatI | GCNGC | 7 cut(s) | 72, 118, 209, 221, 1203, 1392, 1470 |
| Sau3AI | GATC | 9 cut(s) | 40, 156, 181, 372, 559, 604, 703, 904, 943 |
| Sau96I | GGNCC | 6 cut(s) | 79, 161, 176, 194, 195, 1412 |
| ScaI | AGTACT | 1 cut(s) | 652 |
| ScrFI | CCNGG | 1 cut(s) | 1416 |
| SduI | GDGCHC | 5 cut(s) | 63, 198, 255, 1232, 1504 |
| SfaNI | GCATC | 2 cut(s) | 115, 316 |
| SfuI | TTCGAA | 1 cut(s) | 526 |
| SinI | GGWCC | 2 cut(s) | 79, 176 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 387, 840 |
| SmlI | CTYRAG | 4 cut(s) | 215, 224, 684, 1231 |
| SmoI | CTYRAG | 4 cut(s) | 215, 224, 684, 1231 |
| SpeI | ACTAGT | 1 cut(s) | 653 |
| SsiI | CCGC | 9 cut(s) | 93, 117, 208, 220, 247, 255, 484, 789, 1330 |
| SspI | AATATT | 2 cut(s) | 274, 952 |
| SspMI | CTAG | 2 cut(s) | 654, 1374 |
| SstI | GAGCTC | 2 cut(s) | 63, 1232 |
| StyD4I | CCNGG | 1 cut(s) | 1414 |
| StyI | CCWWGG | 2 cut(s) | 110, 487 |
| TaaI | ACNGT | 3 cut(s) | 355, 1482, 1506 |
| TaiI | ACGT | 2 cut(s) | 147, 456 |
| TaqI | TCGA | 5 cut(s) | 39, 51, 288, 319, 526 |
| TatI | WGTACW | 2 cut(s) | 650, 1322 |
| TauI | GCSGC | 3 cut(s) | 120, 211, 223 |
| TfiI | GAWTC | 8 cut(s) | 53, 265, 545, 551, 824, 1090, 1186, 1333 |
| Tru1I | TTAA | 4 cut(s) | 132, 398, 539, 1002 |
| Tru9I | TTAA | 4 cut(s) | 132, 398, 539, 1002 |
| TscAI | CASTG | 3 cut(s) | 178, 210, 684 |
| TseFI | GTSAC | 1 cut(s) | 1456 |
| TseI | GCWGC | 4 cut(s) | 71, 1202, 1391, 1469 |
| Tsp45I | GTSAC | 1 cut(s) | 1456 |
| TspDTI | ATGAA | 5 cut(s) | 165, 816, 858, 1020, 1199 |
| TspGWI | ACGGA | 3 cut(s) | 92, 560, 1080 |
| TspRI | CASTG | 3 cut(s) | 178, 210, 684 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 383, 424 |
| VpaK11BI | GGWCC | 2 cut(s) | 79, 176 |
| XapI | RAATTY | 4 cut(s) | 776, 846, 1098, 1264 |
| XceI | RCATGY | 2 cut(s) | 867, 1169 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1406 |
| XmiI | GTMKAC | 3 cut(s) | 832, 1367, 1406 |
| XmnI | GAANNNNTTC | 2 cut(s) | 716, 849 |
| XspI | CTAG | 2 cut(s) | 654, 1374 |
| ZraI | GACGTC | 1 cut(s) | 454 |
| ZrmI | AGTACT | 1 cut(s) | 652 |
| Zsp2I | ATGCAT | 1 cut(s) | 331 |