Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007310.1

Orthogroup ID

OG0005748

Physical Location & Seq

Genomic Coordinates Forward (+)

6701 .. 8236

Gene Structure 1536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007310.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atggccgccgactacgaacctccttctttctctctcggactcgatttcgggttcgaatcggagctccaaacagctgctccgcccgactccagtcctccgcgtcctgttgacactgatgtggatcgagagatcgagccgccgcgggagctcaagaggctgaagcgaggtctgccggagaagcgggagcccccgacgacgccgttttggaatattgaagatgacatcgaagagttctcttctcccgaagatactatttgtgatgtgcaacggtcaacacagtaccaaacatcctgtagtagttctaaacttccgttgcgtggaagtggggttttagcttcacaatcatccaaccatcgcattggaaggaaaaggaatcatatttctgatgtcccagcttctgtgagtttggaggcaagccgcaaagaatttgtttttccaaagttaactaccagccctcttcgtaggtttcagttaattgattccgattctgatgatccttcagtcagtcatagtgttagtagggttacttctaaggttgactcatcatcaaagaagcaacacacaaaccctggtcattctgcaactactagtggtaccactactacaaaaattgaatcagacgacggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.02

Weight (kDa)

5.29

Isoelectric Point (pI)

77.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20490
fragaria_vesca	FvH4_3g22630 FvH4_3g22630 FvH4_3g22630
malus_domestica	MD03G1201600.v1.1
prunus_persica	Prupe.4G212300_v2.0.a1 Prupe.4G212300_v2.0.a1 Prupe.4G212300_v2.0.a1
pyrus_communis	pycom03g15290 pycom03g15310
rosa_chinensis	RchiOBHm_Chr5g0039401
rosa_laevigata	RLG00000033911
rosa_multiflora	Rmu_sc0004395.1_g000010 Rmu_sc0004395.1_g000013 Rmu_sc0007310.1_g000002 Rmu_sc0007310.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040530 Rroxscaffold_1G00041820
rosa_rugosa	Rorug05G0178800 Rorug05G0178900 Rorug05G0179000
rosa_samantha	Rh5AG265400 Rh5BG269800 Rh5CG302900 Rh5DG277700 Rh5DG278000
rosa_wichuraiana	Rw5G024860 Rw5G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	593
AccB1I	GGYRCC	1 cut(s)	593
AccII	CGCG	2 cut(s)	100, 142
AciI	CCGC	8 cut(s)	6, 80, 98, 137, 140, 142, 181, 418
AclWI	GGATC	2 cut(s)	129, 488
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	425
AcuI	CTGAAG	2 cut(s)	179, 483
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	2 cut(s)	281, 595
AfiI	CCNNNNNNNGG	1 cut(s)	317
AgsI	TTSAA	2 cut(s)	215, 614
AhlI	ACTAGT	1 cut(s)	587
AjnI	CCWGG	1 cut(s)	568
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	5 cut(s)	64, 74, 148, 335, 395
AluI	AGCT	5 cut(s)	64, 74, 148, 335, 395
Alw21I	GWGCWC	2 cut(s)	66, 150
AlwI	GGATC	2 cut(s)	129, 488
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	425
Asp718I	GGTACC	1 cut(s)	593
AsuII	TTCGAA	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	593
BanII	GRGCYC	3 cut(s)	66, 150, 189
BarI	GAAGNNNNNNTAC	2 cut(s)	511, 543
Bbv12I	GWGCWC	2 cut(s)	66, 150
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	1 cut(s)	360
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	570
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	1 cut(s)	292
BisI	GCNGC	5 cut(s)	6, 75, 137, 140, 418
BlsI	GCNGC	5 cut(s)	7, 76, 138, 141, 419
Bme1390I	CCNGG	1 cut(s)	570
BmiI	GGNNCC	2 cut(s)	186, 595
BmrFI	CCNGG	1 cut(s)	570
BoxI	GACNNNNGTC	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	73
Bpu14I	TTCGAA	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	140, 568
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
Bse1I	ACTGG	1 cut(s)	90
Bse8I	GATNNNNATC	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	2 cut(s)	140, 568
BseGI	GGATG	2 cut(s)	287, 344
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseNI	ACTGG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	61
BseYI	CCCAGC	1 cut(s)	391
Bsh1236I	CGCG	2 cut(s)	100, 142
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	593
BsiHKAI	GWGCWC	2 cut(s)	66, 150
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	54
Bsp1286I	GDGCHC	3 cut(s)	66, 150, 189
Bsp143I	GATC	3 cut(s)	121, 129, 493
BspACI	CCGC	8 cut(s)	6, 80, 98, 137, 140, 142, 181, 418
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	2 cut(s)	100, 142
BspLI	GGNNCC	2 cut(s)	186, 595
BspPI	GGATC	2 cut(s)	129, 488
BspT104I	TTCGAA	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	593
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	140, 568
BssMI	GATC	3 cut(s)	121, 129, 493
BssNI	GRCGYC	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	2 cut(s)	270, 279
Bst6I	CTCTTC	3 cut(s)	222, 241, 462
BstACI	GRCGYC	1 cut(s)	197
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	1 cut(s)	531
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	2 cut(s)	287, 344
BstFNI	CGCG	2 cut(s)	100, 142
BstKTI	GATC	3 cut(s)	124, 132, 496
BstMBI	GATC	3 cut(s)	121, 129, 493
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 154, 169, 178
BstNI	CCWGG	1 cut(s)	570
BstPAI	GACNNNNGTC	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	568
BstSFI	CTRYAG	1 cut(s)	292
BstUI	CGCG	2 cut(s)	100, 142
BstV1I	GCAGC	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	140
BtgZI	GCGATG	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	287, 344
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	415
CaiI	CAGNNNCTG	1 cut(s)	398
Cfr42I	CCGCGG	1 cut(s)	143
CseI	GACGC	2 cut(s)	89, 205
Csp6I	GTAC	2 cut(s)	280, 594
CviQI	GTAC	2 cut(s)	280, 594
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	3 cut(s)	123, 131, 495
DpnII	GATC	3 cut(s)	121, 129, 493
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	222, 241, 462
EarI	CTCTTC	3 cut(s)	222, 241, 462
EciI	GGCGGA	1 cut(s)	69
Ecl136II	GAGCTC	2 cut(s)	64, 148
Eco24I	GRGCYC	3 cut(s)	66, 150, 189
Eco53kI	GAGCTC	2 cut(s)	64, 148
Eco57I	CTGAAG	2 cut(s)	179, 483
EcoICRI	GAGCTC	2 cut(s)	64, 148
EcoRII	CCWGG	1 cut(s)	568
EcoT38I	GRGCYC	3 cut(s)	66, 150, 189
FaiI	YATR	2 cut(s)	378, 510
FaqI	GGGAC	1 cut(s)	374
FauI	CCCGC	2 cut(s)	135, 174
Fnu4HI	GCNGC	5 cut(s)	6, 75, 137, 140, 418
FokI	GGATG	2 cut(s)	274, 331
FriOI	GRGCYC	3 cut(s)	66, 150, 189
Fsp4HI	GCNGC	5 cut(s)	6, 75, 137, 140, 418
FspBI	CTAG	1 cut(s)	588
GluI	GCNGC	5 cut(s)	6, 75, 137, 140, 418
GsaI	CCCAGC	1 cut(s)	395
GsuI	CTGGAG	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	173
HgaI	GACGC	2 cut(s)	89, 205
Hin1I	GRCGYC	1 cut(s)	197
HincII	GTYRAC	4 cut(s)	109, 273, 444, 538
HindII	GTYRAC	4 cut(s)	109, 273, 444, 538
HinfI	GANTC	8 cut(s)	39, 56, 86, 373, 479, 485, 539, 614
HpaI	GTTAAC	1 cut(s)	444
HpaII	CCGG	1 cut(s)	173
Hpy166II	GTNNAC	4 cut(s)	109, 273, 444, 538
Hpy188I	TCNGA	6 cut(s)	38, 61, 385, 484, 490, 619
Hpy188III	TCNNGA	3 cut(s)	125, 151, 242
Hpy8I	GTNNAC	4 cut(s)	109, 273, 444, 538
Hpy99I	CGWCG	3 cut(s)	196, 199, 626
HpyAV	CCTTC	3 cut(s)	33, 357, 507
HpyCH4III	ACNGT	2 cut(s)	270, 279
HpyCH4V	TGCA	2 cut(s)	265, 581
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 154, 169, 178
HpyF3I	CTNAG	1 cut(s)	531
Hsp92I	GRCGYC	1 cut(s)	197
KpnI	GGTACC	1 cut(s)	597
KspAI	GTTAAC	1 cut(s)	444
KspI	CCGCGG	1 cut(s)	143
Kzo9I	GATC	3 cut(s)	121, 129, 493
LmnI	GCTCC	5 cut(s)	61, 69, 82, 145, 184
LpnPI	CCDG	8 cut(s)	103, 117, 186, 304, 405, 463, 555, 582
Lsp1109I	GCAGC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	588
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	3 cut(s)	123, 131, 495
MboI	GATC	3 cut(s)	121, 129, 493
MboII	GAAGA	5 cut(s)	227, 228, 239, 257, 449
MhlI	GDGCHC	3 cut(s)	66, 150, 189
MluCI	AATT	3 cut(s)	425, 474, 609
MlyI	GAGTC	3 cut(s)	33, 80, 533
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	6 cut(s)	30, 105, 147, 158, 403, 465
MseI	TTAA	2 cut(s)	443, 473
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	2 cut(s)	74, 142
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	570
MvnI	CGCG	2 cut(s)	100, 142
MwoI	GCNNNNNNNGC	4 cut(s)	145, 154, 169, 178
NdeII	GATC	3 cut(s)	121, 129, 493
NlaIV	GGNNCC	2 cut(s)	186, 595
NspV	TTCGAA	1 cut(s)	54
OliI	CACNNNNGTG	1 cut(s)	116
PfeI	GAWTC	5 cut(s)	56, 373, 479, 485, 614
PkrI	GCNGC	5 cut(s)	7, 76, 138, 141, 419
PleI	GAGTC	3 cut(s)	33, 80, 533
PpsI	GAGTC	3 cut(s)	33, 80, 533
PshAI	GACNNNNGTC	1 cut(s)	90
Psp124BI	GAGCTC	2 cut(s)	66, 150
Psp6I	CCWGG	1 cut(s)	568
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	2 cut(s)	186, 595
PstNI	CAGNNNCTG	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	2 cut(s)	281, 595
RsaNI	GTAC	2 cut(s)	280, 594
RseI	CAYNNNNRTG	1 cut(s)	116
SacI	GAGCTC	2 cut(s)	66, 150
SacII	CCGCGG	1 cut(s)	143
SaqAI	TTAA	2 cut(s)	443, 473
SatI	GCNGC	5 cut(s)	6, 75, 137, 140, 418
Sau3AI	GATC	3 cut(s)	121, 129, 493
SchI	GAGTC	3 cut(s)	33, 80, 533
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	3 cut(s)	66, 150, 189
SetI	ASST	9 cut(s)	22, 66, 76, 150, 169, 337, 397, 467, 537
SfcI	CTRYAG	1 cut(s)	292
Sfr303I	CCGCGG	1 cut(s)	143
SfuI	TTCGAA	1 cut(s)	54
SgrBI	CCGCGG	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SpeI	ACTAGT	1 cut(s)	587
Sse9I	AATT	3 cut(s)	425, 474, 609
SsiI	CCGC	8 cut(s)	6, 80, 98, 137, 140, 142, 181, 418
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	1 cut(s)	588
SstI	GAGCTC	2 cut(s)	66, 150
StyD4I	CCNGG	1 cut(s)	568
TaaI	ACNGT	2 cut(s)	270, 279
TaqI	TCGA	5 cut(s)	42, 54, 124, 132, 225
TasI	AATT	3 cut(s)	425, 474, 609
TauI	GCSGC	4 cut(s)	8, 139, 142, 420
TfiI	GAWTC	5 cut(s)	56, 373, 479, 485, 614
Tru1I	TTAA	2 cut(s)	443, 473
Tru9I	TTAA	2 cut(s)	443, 473
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	1 cut(s)	74
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	118
XapI	RAATTY	1 cut(s)	425
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.