RLG00000033911

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005748
Physical Location & Seq
Reverse (-)
34068413 .. 34071250
2838 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033911

Sequence Viewer

Length: 1461 bp
ATGGCCGCCGACTACGAGCCTCCTTCTTTCTCTCTCGGACTCGATTTCGGGTTCGAATCGGAGCTCCAAACACCTGGTCCGCCCGACTCCAGTCCTCCGCGTCCGGTCGACACTGATGTGGATCAACAGATCGAGCCACCGCGGGCGCTCAAGCGGCTGAAGCGAGGTCTGCCGGAGAAGCGGGAGGCCCCGACGACGCCGTTTTGGAGTATTGAAGATGATATCGAAGAGTTCTCTTCTCCTGAAGATACTGTTCAAGATGTGAATCGGTCAACACAATACCAAACATCCTGTAGTAGTTCTAAAGTCCCATTGCGTGGAAGTGGGGTTTTAACTTCTCAATCAGCCTACCATAGCATTGGAAGGAAAAGGAATCATATTTCTGATGTCCCAGCTTCTGTGAGTTTGGAGGCAAGCCGCAAAGAATTTGTTTTTCCAAAGTTAACTACCAGTCCTCTCCGTAGGTTTCAATTAATTGATTCCGATTCTGATGATCCTTCTGTCGGTCATAGTGTTAGTAGGGTTACTTCTAAGGTTGATTCATCCTCAAAGAAGCAACACACTAACCCTGGCCATTCTGCAAGTACTAGTGGAACAAACAAAAATGCATCTACAGGTATGCCTGAAGATATTGATTTGTGGAAAAACTTTAGTCCAATCAAGAAGTTTAACATTCCAACACCTGCTTTGGATGAGGTATGTCAAGAATACTTCCAATCTGTGAAGGATAAGACTACTCAAAATCTGGAGAGGGATGCATATCTGCATACCAATGAGAATTTTCATGAAACGACACCCAGTGGACAAGATGTTGAACAACTCTGGAATGTGGCTGATCCCCTTCCACCTGCCCATCATTACTTTTTCCACGATGATCCAAAGATTCGAAAGTTAGTCTGCAGTCGCTTGCGGAATTTTTCCCCTTTAGGTGCTTTTAGTGTCAGTGGAAATCAACAGACTGGTGCATCAGTTATTGATTACATGGGTCAATTTAGCAATGGAGAAGCTTCAAAACGGAGTGTGAATCGGAGAAAAAATATTTCAAACATATCAAATGTTGAAGAACTCTCGCATGGTTCTGGAAACTGGGTGAACCCAAAAGGTAAAGCTACACAGAAAGTTAGTGTCAAGCGGAGTGTAAATAAGGGAAGAAATAAGTCAGTCAAATCAAACACTGGGAACATGGAGCATGCTTCCGGAAACTGGGTGGAACCCAGAATCTCTGCCAGCAAAAAGCGGATTCAAGCAAATGCACAATGTTCTGGTGAATGGTACACACCTAGTCAAAGTGGCCAAGCTAGTGGGCAAGCTGGTGGTCATTGGTATACAGGCCCTGGTGGAAGGAAGGTTTATGTTAGTAAAACTGGGCAGGAATTGACAGGTCAAACAGCCTACAGACTGTATTCAAAGGAAAGTGGGAAACGGCCTGTGAAGGCCAGAAAAGGGAGAGCCAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

487

Amino Acids

53.66

Weight (kDa)

9.36

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 691, 856
Acc36I ACCTGC 2 cut(s) 691, 856
AccB7I CCANNNNNTGG 1 cut(s) 317
AccI GTMKAC 2 cut(s) 108, 1325
AccII CGCG 2 cut(s) 100, 142
AccIII TCCGGA 1 cut(s) 1196
AclWI GGATC 4 cut(s) 129, 488, 830, 869
AcoI YGGCCR 3 cut(s) 3, 571, 1291
AcsI RAATTY 3 cut(s) 425, 778, 913
AcuI CTGAAG 3 cut(s) 179, 264, 645
AcyI GRCGYC 1 cut(s) 197
AdeI CACNNNGTG 1 cut(s) 800
AfaI GTAC 2 cut(s) 586, 1274
AfiI CCNNNNNNNGG 4 cut(s) 317, 503, 1203, 1443
AgsI TTSAA 9 cut(s) 215, 257, 470, 815, 1011, 1044, 1061, 1244, 1407
AhlI ACTAGT 1 cut(s) 587
AjnI CCWGG 3 cut(s) 73, 568, 1333
AleI CACNNNNGTG 1 cut(s) 116
AluBI AGCT 6 cut(s) 64, 395, 1007, 1109, 1298, 1310
AluI AGCT 6 cut(s) 64, 395, 1007, 1109, 1298, 1310
Alw21I GWGCWC 1 cut(s) 66
AlwI GGATC 4 cut(s) 129, 488, 830, 869
AlwNI CAGNNNCTG 2 cut(s) 398, 1334
Aor13HI TCCGGA 1 cut(s) 1196
AoxI GGCC 7 cut(s) 3, 186, 571, 1291, 1330, 1424, 1434
ApoI RAATTY 3 cut(s) 425, 778, 913
ArsI GACNNNNNNTTYG 2 cut(s) 61, 93
AseI ATTAAT 1 cut(s) 473
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 3 cut(s) 77, 187, 1331
AsuHPI GGTGA 2 cut(s) 1102, 1277
AsuII TTCGAA 2 cut(s) 54, 886
AvaII GGWCC 1 cut(s) 77
BalI TGGCCA 2 cut(s) 573, 1293
BanII GRGCYC 1 cut(s) 66
BarI GAAGNNNNNNTAC 2 cut(s) 511, 543
Bbv12I GWGCWC 1 cut(s) 66
BccI CCATC 1 cut(s) 861
BceAI ACGGC 2 cut(s) 184, 1439
BciT130I CCWGG 3 cut(s) 75, 570, 1335
BcuI ACTAGT 1 cut(s) 587
BfaI CTAG 3 cut(s) 588, 1281, 1299
BfmI CTRYAG 4 cut(s) 292, 612, 898, 1393
BfoI RGCGCY 1 cut(s) 149
BfuAI ACCTGC 2 cut(s) 691, 856
BisI GCNGC 3 cut(s) 6, 155, 418
BlsI GCNGC 3 cut(s) 7, 156, 419
BmcAI AGTACT 1 cut(s) 586
Bme1390I CCNGG 3 cut(s) 75, 570, 1335
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 3 cut(s) 77, 187, 1331
BmiI GGNNCC 2 cut(s) 189, 1212
BmrFI CCNGG 3 cut(s) 75, 570, 1335
BmrI ACTGGG 5 cut(s) 792, 1096, 1185, 1213, 1374
BmsI GCATC 3 cut(s) 617, 745, 974
BmuI ACTGGG 5 cut(s) 792, 1096, 1185, 1213, 1374
BoxI GACNNNNGTC 1 cut(s) 90
BpmI CTGGAG 2 cut(s) 73, 767
Bpu14I TTCGAA 2 cut(s) 54, 886
BpuEI CTTGAG 1 cut(s) 134
BsaBI GATNNNNATC 3 cut(s) 120, 264, 759
BsaHI GRCGYC 1 cut(s) 197
BsaJI CCNNGG 3 cut(s) 140, 568, 1333
BsaWI WCCGGW 2 cut(s) 103, 1196
Bsc4I CCNNNNNNNGG 4 cut(s) 317, 503, 1203, 1443
Bse1I ACTGG 8 cut(s) 90, 450, 798, 964, 1091, 1180, 1208, 1369
Bse3DI GCAATG 2 cut(s) 311, 1003
Bse8I GATNNNNATC 3 cut(s) 120, 264, 759
BseAI TCCGGA 1 cut(s) 1196
BseBI CCWGG 3 cut(s) 75, 570, 1335
BseDI CCNNGG 3 cut(s) 140, 568, 1333
BseGI GGATG 4 cut(s) 287, 542, 697, 760
BseJI GATNNNNATC 3 cut(s) 120, 264, 759
BseLI CCNNNNNNNGG 4 cut(s) 317, 503, 1203, 1443
BseMI GCAATG 2 cut(s) 311, 1003
BseNI ACTGG 8 cut(s) 90, 450, 798, 964, 1091, 1180, 1208, 1369
BseYI CCCAGC 1 cut(s) 391
Bsh1236I CGCG 2 cut(s) 100, 142
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 7 cut(s) 5, 188, 573, 1293, 1332, 1426, 1436
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 3 cut(s) 104, 173, 1197
BslFI GGGAC 2 cut(s) 293, 374
BslI CCNNNNNNNGG 4 cut(s) 317, 503, 1203, 1443
BsmFI GGGAC 2 cut(s) 293, 374
BsnI GGCC 7 cut(s) 5, 188, 573, 1293, 1332, 1426, 1436
Bsp119I TTCGAA 2 cut(s) 54, 886
Bsp1286I GDGCHC 1 cut(s) 66
Bsp13I TCCGGA 1 cut(s) 1196
Bsp143I GATC 5 cut(s) 121, 129, 493, 835, 874
BspANI GGCC 7 cut(s) 5, 188, 573, 1293, 1332, 1426, 1436
BspEI TCCGGA 1 cut(s) 1196
BspFNI CGCG 2 cut(s) 100, 142
BspHI TCATGA 1 cut(s) 784
BspLI GGNNCC 2 cut(s) 189, 1212
BspMAI CTGCAG 1 cut(s) 902
BspMI ACCTGC 2 cut(s) 691, 856
BspPI GGATC 4 cut(s) 129, 488, 830, 869
BspT104I TTCGAA 2 cut(s) 54, 886
BsrDI GCAATG 2 cut(s) 311, 1003
BsrI ACTGG 8 cut(s) 90, 450, 798, 964, 1091, 1180, 1208, 1369
BssECI CCNNGG 3 cut(s) 140, 568, 1333
BssMI GATC 5 cut(s) 121, 129, 493, 835, 874
BssNAI GTATAC 1 cut(s) 1326
BssNI GRCGYC 1 cut(s) 197
Bst1107I GTATAC 1 cut(s) 1326
Bst2UI CCWGG 3 cut(s) 75, 570, 1335
Bst4CI ACNGT 2 cut(s) 253, 1401
Bst6I CTCTTC 2 cut(s) 222, 241
BstACI GRCGYC 1 cut(s) 197
BstBI TTCGAA 2 cut(s) 54, 886
BstC8I GCNNGC 6 cut(s) 144, 415, 908, 1191, 1228, 1308
BstDEI CTNAG 1 cut(s) 531
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 4 cut(s) 287, 542, 697, 760
BstFNI CGCG 2 cut(s) 100, 142
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 5 cut(s) 124, 132, 496, 838, 877
BstMBI GATC 5 cut(s) 121, 129, 493, 835, 874
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 4 cut(s) 154, 160, 169, 178
BstNI CCWGG 3 cut(s) 75, 570, 1335
BstNSI RCATGY 1 cut(s) 1193
BstPAI GACNNNNGTC 1 cut(s) 90
BstSCI CCNGG 3 cut(s) 73, 568, 1333
BstSFI CTRYAG 4 cut(s) 292, 612, 898, 1393
BstUI CGCG 2 cut(s) 100, 142
BstXI CCANNNNNNTGG 3 cut(s) 74, 359, 1301
BstZ17I GTATAC 1 cut(s) 1326
BsuRI GGCC 7 cut(s) 5, 188, 573, 1293, 1332, 1426, 1436
BtgI CCRYGG 1 cut(s) 140
BtsCI GGATG 4 cut(s) 287, 542, 697, 760
BtsIMutI CAGTG 4 cut(s) 111, 805, 949, 1173
BveI ACCTGC 2 cut(s) 691, 856
Cac8I GCNNGC 6 cut(s) 144, 415, 908, 1191, 1228, 1308
CaiI CAGNNNCTG 2 cut(s) 398, 1334
CciI TCATGA 1 cut(s) 784
CfoI GCGC 1 cut(s) 148
Cfr13I GGNCC 3 cut(s) 77, 187, 1331
Cfr42I CCGCGG 1 cut(s) 143
CseI GACGC 2 cut(s) 89, 205
CsiI ACCWGGT 1 cut(s) 73
Csp6I GTAC 2 cut(s) 585, 1273
CviAII CATG 5 cut(s) 785, 982, 1073, 1183, 1190
CviQI GTAC 2 cut(s) 585, 1273
DdeI CTNAG 1 cut(s) 531
DpnI GATC 5 cut(s) 123, 131, 495, 837, 876
DpnII GATC 5 cut(s) 121, 129, 493, 835, 874
DraIII CACNNNGTG 1 cut(s) 800
EaeI YGGCCR 3 cut(s) 3, 571, 1291
Eam1104I CTCTTC 2 cut(s) 222, 241
EarI CTCTTC 2 cut(s) 222, 241
EciI GGCGGA 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 64
Eco57I CTGAAG 3 cut(s) 179, 264, 645
EcoICRI GAGCTC 1 cut(s) 64
EcoO109I RGGNCCY 2 cut(s) 187, 1331
EcoRII CCWGG 3 cut(s) 73, 568, 1333
EcoRV GATATC 1 cut(s) 223
EcoT22I ATGCAT 2 cut(s) 610, 760
EcoT38I GRGCYC 1 cut(s) 66
FaeI CATG 5 cut(s) 788, 985, 1076, 1186, 1193
FaqI GGGAC 2 cut(s) 293, 374
FatI CATG 5 cut(s) 784, 981, 1072, 1182, 1189
FauI CCCGC 2 cut(s) 135, 174
FblI GTMKAC 2 cut(s) 108, 1325
Fnu4HI GCNGC 3 cut(s) 6, 155, 418
FokI GGATG 4 cut(s) 274, 529, 704, 767
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 3 cut(s) 6, 155, 418
FspBI CTAG 3 cut(s) 588, 1281, 1299
GlaI GCGC 1 cut(s) 147
GluI GCNGC 3 cut(s) 6, 155, 418
GsaI CCCAGC 1 cut(s) 395
GsuI CTGGAG 2 cut(s) 73, 767
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 7 cut(s) 5, 188, 573, 1293, 1332, 1426, 1436
HapII CCGG 3 cut(s) 104, 173, 1197
HgaI GACGC 2 cut(s) 89, 205
HhaI GCGC 1 cut(s) 148
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 5 cut(s) 788, 985, 1076, 1186, 1193
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HincII GTYRAC 3 cut(s) 109, 273, 444
HindII GTYRAC 3 cut(s) 109, 273, 444
HindIII AAGCTT 1 cut(s) 1005
HpaI GTTAAC 1 cut(s) 444
HpaII CCGG 3 cut(s) 104, 173, 1197
HphI GGTGA 2 cut(s) 1102, 1277
Hpy166II GTNNAC 7 cut(s) 109, 273, 444, 803, 1093, 1275, 1326
Hpy188I TCNGA 6 cut(s) 38, 61, 385, 484, 490, 1029
Hpy188III TCNNGA 9 cut(s) 242, 257, 661, 704, 746, 785, 823, 1080, 1197
Hpy8I GTNNAC 7 cut(s) 109, 273, 444, 803, 1093, 1275, 1326
Hpy99I CGWCG 2 cut(s) 196, 199
HpyAV CCTTC 8 cut(s) 33, 357, 507, 718, 851, 1335, 1339, 1426
HpyCH4III ACNGT 2 cut(s) 253, 1401
HpyCH4V TGCA 7 cut(s) 581, 608, 758, 766, 900, 965, 1253
HpyF10VI GCNNNNNNNGC 4 cut(s) 154, 160, 169, 178
HpyF3I CTNAG 1 cut(s) 531
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 5 cut(s) 788, 985, 1076, 1186, 1193
HspAI GCGC 1 cut(s) 146
Kpn2I TCCGGA 1 cut(s) 1196
KspAI GTTAAC 1 cut(s) 444
KspI CCGCGG 1 cut(s) 143
Kzo9I GATC 5 cut(s) 121, 129, 493, 835, 874
LmnI GCTCC 3 cut(s) 61, 69, 1186
LweI GCATC 3 cut(s) 617, 745, 974
MabI ACCWGGT 1 cut(s) 73
MaeI CTAG 3 cut(s) 588, 1281, 1299
MaeIII GTNAC 1 cut(s) 523
MalI GATC 5 cut(s) 123, 131, 495, 837, 876
MboI GATC 5 cut(s) 121, 129, 493, 835, 874
MboII GAAGA 7 cut(s) 227, 228, 239, 257, 638, 1073, 1161
MhlI GDGCHC 1 cut(s) 66
MlsI TGGCCA 2 cut(s) 573, 1293
MluCI AATT 7 cut(s) 425, 470, 474, 778, 913, 989, 1373
MluNI TGGCCA 2 cut(s) 573, 1293
MlyI GAGTC 2 cut(s) 33, 80
MmeI TCCRAC 1 cut(s) 701
MnlI CCTC 9 cut(s) 30, 105, 158, 178, 403, 465, 556, 688, 744
Mox20I TGGCCA 2 cut(s) 573, 1293
Mph1103I ATGCAT 2 cut(s) 610, 760
MroI TCCGGA 1 cut(s) 1196
MscI TGGCCA 2 cut(s) 573, 1293
MseI TTAA 4 cut(s) 332, 443, 473, 669
MslI CAYNNNNRTG 2 cut(s) 116, 771
Msp20I TGGCCA 2 cut(s) 573, 1293
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 3 cut(s) 104, 173, 1197
MspR9I CCNGG 3 cut(s) 75, 570, 1335
MvaI CCWGG 3 cut(s) 75, 570, 1335
MvnI CGCG 2 cut(s) 100, 142
MwoI GCNNNNNNNGC 4 cut(s) 154, 160, 169, 178
NdeII GATC 5 cut(s) 121, 129, 493, 835, 874
NlaIII CATG 5 cut(s) 788, 985, 1076, 1186, 1193
NlaIV GGNNCC 2 cut(s) 189, 1212
NsiI ATGCAT 2 cut(s) 610, 760
NspI RCATGY 1 cut(s) 1193
NspV TTCGAA 2 cut(s) 54, 886
OliI CACNNNNGTG 1 cut(s) 116
PaeI GCATGC 1 cut(s) 1193
PagI TCATGA 1 cut(s) 784
PaqCI CACCTGC 2 cut(s) 691, 856
PflMI CCANNNNNTGG 1 cut(s) 317
PkrI GCNGC 3 cut(s) 7, 156, 419
PleI GAGTC 2 cut(s) 33, 80
PpsI GAGTC 2 cut(s) 33, 80
PshAI GACNNNNGTC 1 cut(s) 90
PshBI ATTAAT 1 cut(s) 473
Psp124BI GAGCTC 1 cut(s) 66
Psp6I CCWGG 3 cut(s) 73, 568, 1333
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 3 cut(s) 73, 568, 1333
PspN4I GGNNCC 2 cut(s) 189, 1212
PspPI GGNCC 3 cut(s) 77, 187, 1331
PstI CTGCAG 1 cut(s) 902
PstNI CAGNNNCTG 2 cut(s) 398, 1334
RsaI GTAC 2 cut(s) 586, 1274
RsaNI GTAC 2 cut(s) 585, 1273
RseI CAYNNNNRTG 2 cut(s) 116, 771
SacI GAGCTC 1 cut(s) 66
SacII CCGCGG 1 cut(s) 143
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 4 cut(s) 332, 443, 473, 669
SatI GCNGC 3 cut(s) 6, 155, 418
Sau3AI GATC 5 cut(s) 121, 129, 493, 835, 874
Sau96I GGNCC 3 cut(s) 77, 187, 1331
ScaI AGTACT 1 cut(s) 586
SchI GAGTC 2 cut(s) 33, 80
ScrFI CCNGG 3 cut(s) 75, 570, 1335
SduI GDGCHC 1 cut(s) 66
SexAI ACCWGGT 1 cut(s) 73
SfaNI GCATC 3 cut(s) 617, 745, 974
SfcI CTRYAG 4 cut(s) 292, 612, 898, 1393
Sfr303I CCGCGG 1 cut(s) 143
SfuI TTCGAA 2 cut(s) 54, 886
SgrBI CCGCGG 1 cut(s) 143
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 2 cut(s) 116, 771
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SpeI ACTAGT 1 cut(s) 587
SphI GCATGC 1 cut(s) 1193
Sse9I AATT 7 cut(s) 425, 470, 474, 778, 913, 989, 1373
SspI AATATT 1 cut(s) 1039
SspMI CTAG 3 cut(s) 588, 1281, 1299
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 3 cut(s) 73, 568, 1333
TaaI ACNGT 2 cut(s) 253, 1401
TaqI TCGA 6 cut(s) 42, 54, 108, 132, 225, 886
TaqII GACCGA 2 cut(s) 258, 494
TasI AATT 7 cut(s) 425, 470, 474, 778, 913, 989, 1373
TatI WGTACW 1 cut(s) 584
TauI GCSGC 3 cut(s) 8, 157, 420
Tru1I TTAA 4 cut(s) 332, 443, 473, 669
Tru9I TTAA 4 cut(s) 332, 443, 473, 669
TscAI CASTG 4 cut(s) 118, 805, 949, 1180
TspDTI ATGAA 3 cut(s) 531, 773, 801
TspGWI ACGGA 2 cut(s) 449, 1030
TspRI CASTG 4 cut(s) 118, 805, 949, 1180
Van91I CCANNNNNTGG 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 77
VspI ATTAAT 1 cut(s) 473
XapI RAATTY 3 cut(s) 425, 778, 913
XceI RCATGY 1 cut(s) 1193
XmiI GTMKAC 2 cut(s) 108, 1325
XspI CTAG 3 cut(s) 588, 1281, 1299
ZrmI AGTACT 1 cut(s) 586
Zsp2I ATGCAT 2 cut(s) 610, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.