Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004395.1

Orthogroup ID

OG0005748

Physical Location & Seq

Genomic Coordinates Forward (+)

48645 .. 50992

Gene Structure 2348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004395.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

atggccgccgactacgaacctccttctttctctctcggactcgatttcgggttcgaatcggagctccaaacagctgctccgcccgactccagtcctccgcgtcctgttgacactgatgtggatcgagagatcgagccgccgcgggagctcaagaggctgaagcgaggtctgccggagaagcgggagcccccgacgacgccgttttggaatattgaagatgacatcgaagagttctcttctcccgaagatactatttgtgcagatgtgcaacggtcaacacagtaccaaacatcctgtagtagttctaaacttccgttgcgtggaagtggggttttagcttcacaatcatccaaccatcgcattggaaggaaaaggaatcatatttctgatgtcccagcttctgtgagtttggaggcaagccgcaaagaatttgtttttccaaagttaactaccagccctcttcgtaggtttcagttaattgattccgattctgatgatccttcagtcattcatagtgttagtagggttacttctaaggttgactcatcatcaaagaagcaacacacaaaccctggtcattctgcaactactagtggtacaaacaaaaatgcatctacaggtatgcctgaagacgttgatttgtggaaaaactttagtccaatcaagaagtttaacattccaacacctgctttggatgaggtatgtcaagaatacttccaatctgtgaaggataagattactcaaaatctgaagagggatgcatatctgcataccaacgagaattttcatgaaacgacacccagtggtcaagatgttgaacaactctggaatgtggctgatccccttccatccgcccatcattactttttccacgatgatccaaagattcgaaagggtcaatttagcaatggagaagcttcaaaacggacagtgaataggagacaaagtatttcaaacatatcaaatgttgaagaagtcttgcatggttatggaaactgggtgaacccaaacggtaaagctaaacagataggtagtgtcaagcggagtgtaaacaagggaagaaataagttggtcaaatcaaacaccgggaacatggagcatgcttcaggaaactgggtggaacccagaatctctgccagcaaaaagcggattcaagcaaatgcacaatcttctggtgaatggtacacacctagtcaaagtggtcaagctagtgggcaagctggtggtcattggtatacaggccctggtggaaggaagatatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

421

Amino Acids

46.74

Weight (kDa)

8.49

Isoelectric Point (pI)

58.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20490
fragaria_vesca	FvH4_3g22630 FvH4_3g22630 FvH4_3g22630
malus_domestica	MD03G1201600.v1.1
prunus_persica	Prupe.4G212300_v2.0.a1 Prupe.4G212300_v2.0.a1 Prupe.4G212300_v2.0.a1
pyrus_communis	pycom03g15290 pycom03g15310
rosa_chinensis	RchiOBHm_Chr5g0039401
rosa_laevigata	RLG00000033911
rosa_multiflora	Rmu_sc0004395.1_g000010 Rmu_sc0004395.1_g000013 Rmu_sc0007310.1_g000002 Rmu_sc0007310.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040530 Rroxscaffold_1G00041820
rosa_rugosa	Rorug05G0178800 Rorug05G0178900 Rorug05G0179000
rosa_samantha	Rh5AG265400 Rh5BG269800 Rh5CG302900 Rh5DG277700 Rh5DG278000
rosa_wichuraiana	Rw5G024860 Rw5G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	694
Acc36I	ACCTGC	1 cut(s)	694
AccI	GTMKAC	1 cut(s)	1235
AccII	CGCG	2 cut(s)	100, 142
AclWI	GGATC	4 cut(s)	129, 491, 833, 872
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	428, 781
AcuI	CTGAAG	5 cut(s)	179, 486, 648, 770, 1089
AcyI	GRCGYC	1 cut(s)	197
AdeI	CACNNNGTG	1 cut(s)	803
AfaI	GTAC	3 cut(s)	284, 598, 1184
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	6 cut(s)	215, 818, 921, 954, 971, 1154
AhlI	ACTAGT	1 cut(s)	590
AjnI	CCWGG	2 cut(s)	571, 1243
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	9 cut(s)	64, 74, 148, 338, 398, 917, 1019, 1208, 1220
AluI	AGCT	9 cut(s)	64, 74, 148, 338, 398, 917, 1019, 1208, 1220
Alw21I	GWGCWC	2 cut(s)	66, 150
Alw26I	GTCTC	1 cut(s)	934
AlwI	GGATC	4 cut(s)	129, 491, 833, 872
AlwNI	CAGNNNCTG	2 cut(s)	401, 1244
AoxI	GGCC	2 cut(s)	3, 1240
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	2 cut(s)	428, 781
AspS9I	GGNCC	1 cut(s)	1241
AsuC2I	CCSGG	1 cut(s)	1087
AsuHPI	GGTGA	2 cut(s)	1012, 1187
AsuII	TTCGAA	2 cut(s)	54, 889
BanII	GRGCYC	3 cut(s)	66, 150, 189
BarI	GAAGNNNNNNTAC	2 cut(s)	514, 546
BbsI	GAAGAC	1 cut(s)	636
Bbv12I	GWGCWC	2 cut(s)	66, 150
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	3 cut(s)	363, 856, 864
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	2 cut(s)	573, 1245
BcnI	CCSGG	1 cut(s)	1087
BcoDI	GTCTC	1 cut(s)	934
BcuI	ACTAGT	1 cut(s)	590
BfaI	CTAG	3 cut(s)	591, 1191, 1209
BfmI	CTRYAG	2 cut(s)	295, 615
BfuAI	ACCTGC	1 cut(s)	694
BisI	GCNGC	5 cut(s)	6, 75, 137, 140, 421
BlsI	GCNGC	5 cut(s)	7, 76, 138, 141, 422
Bme1390I	CCNGG	3 cut(s)	573, 1087, 1245
BmgT120I	GGNCC	1 cut(s)	1241
BmiI	GGNNCC	2 cut(s)	186, 1122
BmrFI	CCNGG	3 cut(s)	573, 1087, 1245
BmrI	ACTGGG	3 cut(s)	795, 1006, 1123
BmsI	GCATC	2 cut(s)	620, 748
BmuI	ACTGGG	3 cut(s)	795, 1006, 1123
BoxI	GACNNNNGTC	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	636
BpmI	CTGGAG	1 cut(s)	73
Bpu14I	TTCGAA	2 cut(s)	54, 889
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	1087
BsaBI	GATNNNNATC	2 cut(s)	120, 762
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	140, 571, 1243
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 931, 961
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse1I	ACTGG	4 cut(s)	90, 801, 1001, 1118
Bse3DI	GCAATG	1 cut(s)	913
Bse8I	GATNNNNATC	2 cut(s)	120, 762
BseBI	CCWGG	2 cut(s)	573, 1245
BseDI	CCNNGG	3 cut(s)	140, 571, 1243
BseGI	GGATG	5 cut(s)	290, 347, 700, 763, 848
BseJI	GATNNNNATC	2 cut(s)	120, 762
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	1 cut(s)	913
BseNI	ACTGG	4 cut(s)	90, 801, 1001, 1118
BseXI	GCAGC	1 cut(s)	61
BseYI	CCCAGC	1 cut(s)	394
BsgI	GTGCAG	1 cut(s)	279
Bsh1236I	CGCG	2 cut(s)	100, 142
BshFI	GGCC	2 cut(s)	5, 1242
BsiHKAI	GWGCWC	2 cut(s)	66, 150
BsiSI	CCGG	2 cut(s)	173, 1086
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	934
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	5, 1242
Bsp119I	TTCGAA	2 cut(s)	54, 889
Bsp1286I	GDGCHC	3 cut(s)	66, 150, 189
Bsp143I	GATC	5 cut(s)	121, 129, 496, 838, 877
BspANI	GGCC	2 cut(s)	5, 1242
BspFNI	CGCG	2 cut(s)	100, 142
BspHI	TCATGA	1 cut(s)	787
BspLI	GGNNCC	2 cut(s)	186, 1122
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	4 cut(s)	129, 491, 833, 872
BspT104I	TTCGAA	2 cut(s)	54, 889
BsrDI	GCAATG	1 cut(s)	913
BsrI	ACTGG	4 cut(s)	90, 801, 1001, 1118
BssECI	CCNNGG	3 cut(s)	140, 571, 1243
BssMI	GATC	5 cut(s)	121, 129, 496, 838, 877
BssNAI	GTATAC	1 cut(s)	1236
BssNI	GRCGYC	1 cut(s)	197
Bst1107I	GTATAC	1 cut(s)	1236
Bst2UI	CCWGG	2 cut(s)	573, 1245
Bst4CI	ACNGT	4 cut(s)	273, 282, 931, 1013
Bst6I	CTCTTC	4 cut(s)	222, 241, 465, 746
BstACI	GRCGYC	1 cut(s)	197
BstBI	TTCGAA	2 cut(s)	54, 889
BstC8I	GCNNGC	4 cut(s)	418, 1101, 1138, 1218
BstDEI	CTNAG	1 cut(s)	534
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	5 cut(s)	290, 347, 700, 763, 848
BstFNI	CGCG	2 cut(s)	100, 142
BstKTI	GATC	5 cut(s)	124, 132, 499, 841, 880
BstMAI	GTCTC	1 cut(s)	934
BstMBI	GATC	5 cut(s)	121, 129, 496, 838, 877
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 154, 169, 178
BstNI	CCWGG	2 cut(s)	573, 1245
BstNSI	RCATGY	1 cut(s)	1103
BstPAI	GACNNNNGTC	1 cut(s)	90
BstSCI	CCNGG	3 cut(s)	571, 1085, 1243
BstSFI	CTRYAG	2 cut(s)	295, 615
BstUI	CGCG	2 cut(s)	100, 142
BstV1I	GCAGC	1 cut(s)	61
BstV2I	GAAGAC	1 cut(s)	636
BstXI	CCANNNNNNTGG	1 cut(s)	362
BstZ17I	GTATAC	1 cut(s)	1236
BsuRI	GGCC	2 cut(s)	5, 1242
BtgI	CCRYGG	1 cut(s)	140
BtgZI	GCGATG	1 cut(s)	341
BtsCI	GGATG	5 cut(s)	290, 347, 700, 763, 848
BtsIMutI	CAGTG	3 cut(s)	111, 808, 936
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	4 cut(s)	418, 1101, 1138, 1218
CaiI	CAGNNNCTG	2 cut(s)	401, 1244
CciI	TCATGA	1 cut(s)	787
Cfr13I	GGNCC	1 cut(s)	1241
Cfr42I	CCGCGG	1 cut(s)	143
CseI	GACGC	2 cut(s)	89, 205
Csp6I	GTAC	3 cut(s)	283, 597, 1183
CviAII	CATG	4 cut(s)	788, 983, 1093, 1100
CviQI	GTAC	3 cut(s)	283, 597, 1183
DdeI	CTNAG	1 cut(s)	534
DpnI	GATC	5 cut(s)	123, 131, 498, 840, 879
DpnII	GATC	5 cut(s)	121, 129, 496, 838, 877
DraIII	CACNNNGTG	1 cut(s)	803
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	222, 241, 465, 746
EarI	CTCTTC	4 cut(s)	222, 241, 465, 746
EciI	GGCGGA	2 cut(s)	69, 841
Ecl136II	GAGCTC	2 cut(s)	64, 148
Eco24I	GRGCYC	3 cut(s)	66, 150, 189
Eco53kI	GAGCTC	2 cut(s)	64, 148
Eco57I	CTGAAG	5 cut(s)	179, 486, 648, 770, 1089
EcoICRI	GAGCTC	2 cut(s)	64, 148
EcoO109I	RGGNCCY	1 cut(s)	1241
EcoRII	CCWGG	2 cut(s)	571, 1243
EcoT22I	ATGCAT	2 cut(s)	613, 763
EcoT38I	GRGCYC	3 cut(s)	66, 150, 189
FaeI	CATG	4 cut(s)	791, 986, 1096, 1103
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	4 cut(s)	787, 982, 1092, 1099
FauI	CCCGC	2 cut(s)	135, 174
FblI	GTMKAC	1 cut(s)	1235
Fnu4HI	GCNGC	5 cut(s)	6, 75, 137, 140, 421
FokI	GGATG	5 cut(s)	277, 334, 707, 770, 835
FriOI	GRGCYC	3 cut(s)	66, 150, 189
Fsp4HI	GCNGC	5 cut(s)	6, 75, 137, 140, 421
FspBI	CTAG	3 cut(s)	591, 1191, 1209
GluI	GCNGC	5 cut(s)	6, 75, 137, 140, 421
GsaI	CCCAGC	1 cut(s)	398
GsuI	CTGGAG	1 cut(s)	73
HaeIII	GGCC	2 cut(s)	5, 1242
HapII	CCGG	2 cut(s)	173, 1086
HgaI	GACGC	2 cut(s)	89, 205
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	4 cut(s)	791, 986, 1096, 1103
HincII	GTYRAC	4 cut(s)	109, 276, 447, 541
HindII	GTYRAC	4 cut(s)	109, 276, 447, 541
HindIII	AAGCTT	1 cut(s)	915
HpaI	GTTAAC	1 cut(s)	447
HpaII	CCGG	2 cut(s)	173, 1086
HphI	GGTGA	2 cut(s)	1012, 1187
Hpy166II	GTNNAC	8 cut(s)	109, 276, 447, 541, 1003, 1051, 1185, 1236
Hpy188I	TCNGA	6 cut(s)	38, 61, 388, 487, 493, 750
Hpy188III	TCNNGA	9 cut(s)	125, 151, 242, 664, 707, 788, 809, 826, 1107
Hpy8I	GTNNAC	8 cut(s)	109, 276, 447, 541, 1003, 1051, 1185, 1236
Hpy99I	CGWCG	2 cut(s)	196, 199
HpyAV	CCTTC	6 cut(s)	33, 360, 510, 721, 854, 1245
HpyCH4III	ACNGT	4 cut(s)	273, 282, 931, 1013
HpyCH4IV	ACGT	1 cut(s)	633
HpyCH4V	TGCA	8 cut(s)	260, 268, 584, 611, 761, 769, 982, 1163
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 154, 169, 178
HpyF3I	CTNAG	1 cut(s)	534
HpySE526I	ACGT	1 cut(s)	633
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	4 cut(s)	791, 986, 1096, 1103
KspAI	GTTAAC	1 cut(s)	447
KspI	CCGCGG	1 cut(s)	143
Kzo9I	GATC	5 cut(s)	121, 129, 496, 838, 877
LmnI	GCTCC	6 cut(s)	61, 69, 82, 145, 184, 1096
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	2 cut(s)	620, 748
MaeI	CTAG	3 cut(s)	591, 1191, 1209
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	5 cut(s)	123, 131, 498, 840, 879
MboI	GATC	5 cut(s)	121, 129, 496, 838, 877
MhlI	GDGCHC	3 cut(s)	66, 150, 189
MluCI	AATT	4 cut(s)	428, 477, 781, 899
MlyI	GAGTC	3 cut(s)	33, 80, 536
MmeI	TCCRAC	2 cut(s)	375, 704
MnlI	CCTC	8 cut(s)	30, 105, 147, 158, 406, 468, 691, 747
Mph1103I	ATGCAT	2 cut(s)	613, 763
MseI	TTAA	4 cut(s)	446, 476, 672, 1264
MslI	CAYNNNNRTG	2 cut(s)	116, 987
MspA1I	CMGCKG	2 cut(s)	74, 142
MspI	CCGG	2 cut(s)	173, 1086
MspR9I	CCNGG	3 cut(s)	573, 1087, 1245
MvaI	CCWGG	2 cut(s)	573, 1245
MvnI	CGCG	2 cut(s)	100, 142
MwoI	GCNNNNNNNGC	4 cut(s)	145, 154, 169, 178
NciI	CCSGG	1 cut(s)	1087
NdeII	GATC	5 cut(s)	121, 129, 496, 838, 877
NlaIII	CATG	4 cut(s)	791, 986, 1096, 1103
NlaIV	GGNNCC	2 cut(s)	186, 1122
NsiI	ATGCAT	2 cut(s)	613, 763
NspI	RCATGY	1 cut(s)	1103
NspV	TTCGAA	2 cut(s)	54, 889
OliI	CACNNNNGTG	1 cut(s)	116
PaeI	GCATGC	1 cut(s)	1103
PagI	TCATGA	1 cut(s)	787
PaqCI	CACCTGC	1 cut(s)	694
PfeI	GAWTC	7 cut(s)	56, 376, 482, 488, 886, 1128, 1150
PkrI	GCNGC	5 cut(s)	7, 76, 138, 141, 422
PleI	GAGTC	3 cut(s)	33, 80, 536
PpsI	GAGTC	3 cut(s)	33, 80, 536
PshAI	GACNNNNGTC	1 cut(s)	90
Psp124BI	GAGCTC	2 cut(s)	66, 150
Psp6I	CCWGG	2 cut(s)	571, 1243
PspFI	CCCAGC	1 cut(s)	394
PspGI	CCWGG	2 cut(s)	571, 1243
PspN4I	GGNNCC	2 cut(s)	186, 1122
PspPI	GGNCC	1 cut(s)	1241
PstNI	CAGNNNCTG	2 cut(s)	401, 1244
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	3 cut(s)	284, 598, 1184
RsaNI	GTAC	3 cut(s)	283, 597, 1183
RseI	CAYNNNNRTG	2 cut(s)	116, 987
SacI	GAGCTC	2 cut(s)	66, 150
SacII	CCGCGG	1 cut(s)	143
SaqAI	TTAA	4 cut(s)	446, 476, 672, 1264
SatI	GCNGC	5 cut(s)	6, 75, 137, 140, 421
Sau3AI	GATC	5 cut(s)	121, 129, 496, 838, 877
Sau96I	GGNCC	1 cut(s)	1241
SchI	GAGTC	3 cut(s)	33, 80, 536
ScrFI	CCNGG	3 cut(s)	573, 1087, 1245
SduI	GDGCHC	3 cut(s)	66, 150, 189
SfaNI	GCATC	2 cut(s)	620, 748
SfcI	CTRYAG	2 cut(s)	295, 615
Sfr303I	CCGCGG	1 cut(s)	143
SfuI	TTCGAA	2 cut(s)	54, 889
SgrBI	CCGCGG	1 cut(s)	143
SmiMI	CAYNNNNRTG	2 cut(s)	116, 987
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SpeI	ACTAGT	1 cut(s)	590
SphI	GCATGC	1 cut(s)	1103
Sse9I	AATT	4 cut(s)	428, 477, 781, 899
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	3 cut(s)	591, 1191, 1209
SstI	GAGCTC	2 cut(s)	66, 150
StyD4I	CCNGG	3 cut(s)	571, 1085, 1243
TaaI	ACNGT	4 cut(s)	273, 282, 931, 1013
TaiI	ACGT	1 cut(s)	636
TaqI	TCGA	6 cut(s)	42, 54, 124, 132, 225, 889
TasI	AATT	4 cut(s)	428, 477, 781, 899
TauI	GCSGC	4 cut(s)	8, 139, 142, 423
TfiI	GAWTC	7 cut(s)	56, 376, 482, 488, 886, 1128, 1150
Tru1I	TTAA	4 cut(s)	446, 476, 672, 1264
Tru9I	TTAA	4 cut(s)	446, 476, 672, 1264
TscAI	CASTG	3 cut(s)	118, 808, 936
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	3 cut(s)	500, 776, 804
TspGWI	ACGGA	2 cut(s)	303, 940
TspRI	CASTG	3 cut(s)	118, 808, 936
XapI	RAATTY	2 cut(s)	428, 781
XceI	RCATGY	1 cut(s)	1103
XmiI	GTMKAC	1 cut(s)	1235
XspI	CTAG	3 cut(s)	591, 1191, 1209
Zsp2I	ATGCAT	2 cut(s)	613, 763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.