Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007310.1

Orthogroup ID

OG0005748

Physical Location & Seq

Genomic Coordinates Forward (+)

30278 .. 33284

Gene Structure 3007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007310.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgagcaagatggagtgtttatacaccataaattatatatttacttcaaagtttgccaaatttgtagcagatgtgcaacggtcaacacagtaccaaacatcctgtagtagttctaaacttccgttgcgtggaagtggggttttagcttcacaatcatccaaccatcgcattggaaggaaaaggaatcatatttctgatatcccagcttctgtgagtttggaggcaagccgcaaagaatttgtttttccaaagttaactaccagccctcttcgtaggtttcagttaattgattccgattctgatgatccttcagtcagtcatagtgttagtagggttacttctaaggttgactcatcatcaaagaagcaacacacaaaccctggtcattctgcaactactagtgaggcaaaacgtcgtctatcgaggcgccgtctgatgaagatcgattgtagggaaccgtcgtgtgaagggctcggcagcatggcgcgcagcatgtcggcagcatgccggcagcctgtcgacagcattagctgttgtgtgactattcttcagacgacgggcgactttagaaactgttgtgtgattgcaattcagaggggtcaatttagcaatggagaagcttcaaaacggacagtgaataggagacaaagtatttcaaacatatcaaatgttaaagaagtcttgcatggttctggaaactgggtgaacccaaacggtaaagctaaacagaaaggtagtgtcaagcggagtgtaaacaagggaagaaataagttggtcaaatcaaacaccgggaacatggagcatgcttctggaaactgggtggaacccagaatctctgccagcaaaaagcggattcaagcaaatgcacaatcttctggtgaatggtacacacctagtcaaagtggtcaagctagtgggcaagctggtggtcattggtatacaggccctggtggaaggaaggtatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

35.26

Weight (kDa)

10.28

Isoelectric Point (pI)

58.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20490
fragaria_vesca	FvH4_3g22630 FvH4_3g22630 FvH4_3g22630
malus_domestica	MD03G1201600.v1.1
prunus_persica	Prupe.4G212300_v2.0.a1 Prupe.4G212300_v2.0.a1 Prupe.4G212300_v2.0.a1
pyrus_communis	pycom03g15290 pycom03g15310
rosa_chinensis	RchiOBHm_Chr5g0039401
rosa_laevigata	RLG00000033911
rosa_multiflora	Rmu_sc0004395.1_g000010 Rmu_sc0004395.1_g000013 Rmu_sc0007310.1_g000002 Rmu_sc0007310.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040530 Rroxscaffold_1G00041820
rosa_rugosa	Rorug05G0178800 Rorug05G0178900 Rorug05G0179000
rosa_samantha	Rh5AG265400 Rh5BG269800 Rh5CG302900 Rh5DG277700 Rh5DG278000
rosa_wichuraiana	Rw5G024860 Rw5G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	426
AccI	GTMKAC	2 cut(s)	519, 938
AccII	CGCG	1 cut(s)	487
AciI	CCGC	3 cut(s)	229, 745, 850
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	2 cut(s)	59, 236
AcuI	CTGAAG	2 cut(s)	294, 533
AcyI	GRCGYC	1 cut(s)	427
AfaI	GTAC	2 cut(s)	92, 887
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	4 cut(s)	48, 624, 657, 857
AhlI	ACTAGT	1 cut(s)	398
AjnI	CCWGG	2 cut(s)	379, 946
AluBI	AGCT	7 cut(s)	146, 206, 531, 620, 722, 911, 923
AluI	AGCT	7 cut(s)	146, 206, 531, 620, 722, 911, 923
Alw26I	GTCTC	1 cut(s)	637
AlwI	GGATC	1 cut(s)	299
AlwNI	CAGNNNCTG	2 cut(s)	209, 947
AoxI	GGCC	1 cut(s)	943
ApeKI	GCWGC	4 cut(s)	477, 489, 500, 511
ApoI	RAATTY	2 cut(s)	59, 236
AspLEI	GCGC	3 cut(s)	429, 487, 489
AspS9I	GGNCC	1 cut(s)	944
AsuC2I	CCSGG	1 cut(s)	790
AsuHPI	GGTGA	2 cut(s)	715, 890
BanI	GGYRCC	1 cut(s)	426
BanII	GRGCYC	1 cut(s)	474
BarI	GAAGNNNNNNTAC	2 cut(s)	322, 354
BbvI	GCAGC	4 cut(s)	489, 501, 512, 523
BccI	CCATC	2 cut(s)	4, 171
BceAI	ACGGC	1 cut(s)	414
BciT130I	CCWGG	2 cut(s)	381, 948
BcnI	CCSGG	1 cut(s)	790
BcoDI	GTCTC	1 cut(s)	637
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	3 cut(s)	399, 894, 912
BfmI	CTRYAG	1 cut(s)	103
BfoI	RGCGCY	1 cut(s)	430
BisI	GCNGC	5 cut(s)	229, 478, 490, 501, 512
BlsI	GCNGC	5 cut(s)	230, 479, 491, 502, 513
Bme1390I	CCNGG	3 cut(s)	381, 790, 948
BmgT120I	GGNCC	1 cut(s)	944
BmiI	GGNNCC	3 cut(s)	428, 456, 825
BmrFI	CCNGG	3 cut(s)	381, 790, 948
BmrI	ACTGGG	2 cut(s)	709, 826
BmuI	ACTGGG	2 cut(s)	709, 826
BpuMI	CCSGG	1 cut(s)	790
Bsa29I	ATCGAT	1 cut(s)	444
BsaBI	GATNNNNATC	1 cut(s)	440
BsaHI	GRCGYC	1 cut(s)	427
BsaJI	CCNNGG	2 cut(s)	379, 946
BsaXI	ACNNNNNCTCC	2 cut(s)	634, 664
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse118I	RCCGGY	1 cut(s)	507
Bse1I	ACTGG	2 cut(s)	704, 821
Bse3DI	GCAATG	1 cut(s)	616
Bse8I	GATNNNNATC	1 cut(s)	440
BseBI	CCWGG	2 cut(s)	381, 948
BseCI	ATCGAT	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	379, 946
BseGI	GGATG	2 cut(s)	98, 155
BseJI	GATNNNNATC	1 cut(s)	440
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMI	GCAATG	1 cut(s)	616
BseNI	ACTGG	2 cut(s)	704, 821
BsePI	GCGCGC	1 cut(s)	485
BseXI	GCAGC	4 cut(s)	489, 501, 512, 523
BseYI	CCCAGC	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	487
BshFI	GGCC	1 cut(s)	945
BshNI	GGYRCC	1 cut(s)	426
BshVI	ATCGAT	1 cut(s)	444
BsiSI	CCGG	2 cut(s)	508, 789
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	637
BsnI	GGCC	1 cut(s)	945
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	2 cut(s)	304, 441
BspACI	CCGC	3 cut(s)	229, 745, 850
BspANI	GGCC	1 cut(s)	945
BspDI	ATCGAT	1 cut(s)	444
BspFNI	CGCG	1 cut(s)	487
BspLI	GGNNCC	3 cut(s)	428, 456, 825
BspPI	GGATC	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	426
BsrDI	GCAATG	1 cut(s)	616
BsrFI	RCCGGY	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	704, 821
BssAI	RCCGGY	1 cut(s)	507
BssECI	CCNNGG	2 cut(s)	379, 946
BssHII	GCGCGC	1 cut(s)	485
BssMI	GATC	2 cut(s)	304, 441
BssNAI	GTATAC	1 cut(s)	939
BssNI	GRCGYC	1 cut(s)	427
Bst1107I	GTATAC	1 cut(s)	939
Bst2UI	CCWGG	2 cut(s)	381, 948
Bst4CI	ACNGT	6 cut(s)	81, 90, 459, 575, 634, 716
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	427
BstC8I	GCNNGC	7 cut(s)	226, 487, 505, 509, 804, 841, 921
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	98, 155
BstFNI	CGCG	1 cut(s)	487
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	3 cut(s)	429, 487, 489
BstKTI	GATC	2 cut(s)	307, 444
BstMAI	GTCTC	1 cut(s)	637
BstMBI	GATC	2 cut(s)	304, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	486
BstNI	CCWGG	2 cut(s)	381, 948
BstNSI	RCATGY	3 cut(s)	496, 507, 806
BstSCI	CCNGG	3 cut(s)	379, 788, 946
BstSFI	CTRYAG	1 cut(s)	103
BstUI	CGCG	1 cut(s)	487
BstV1I	GCAGC	4 cut(s)	489, 501, 512, 523
BstXI	CCANNNNNNTGG	1 cut(s)	170
BstZ17I	GTATAC	1 cut(s)	939
Bsu15I	ATCGAT	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	945
BsuTUI	ATCGAT	1 cut(s)	444
BtgZI	GCGATG	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	98, 155
BtsIMutI	CAGTG	1 cut(s)	639
Cac8I	GCNNGC	7 cut(s)	226, 487, 505, 509, 804, 841, 921
CaiI	CAGNNNCTG	2 cut(s)	209, 947
CfoI	GCGC	3 cut(s)	429, 487, 489
Cfr10I	RCCGGY	1 cut(s)	507
Cfr13I	GGNCC	1 cut(s)	944
ClaI	ATCGAT	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	91, 886
CviAII	CATG	6 cut(s)	481, 493, 504, 686, 796, 803
CviQI	GTAC	2 cut(s)	91, 886
DdeI	CTNAG	1 cut(s)	342
DinI	GGCGCC	1 cut(s)	428
DpnI	GATC	2 cut(s)	306, 443
DpnII	GATC	2 cut(s)	304, 441
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	474
Eco32I	GATATC	1 cut(s)	199
Eco57I	CTGAAG	2 cut(s)	294, 533
EcoO109I	RGGNCCY	1 cut(s)	944
EcoRII	CCWGG	2 cut(s)	379, 946
EcoRV	GATATC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	474
EgeI	GGCGCC	1 cut(s)	428
EheI	GGCGCC	1 cut(s)	428
FaeI	CATG	6 cut(s)	484, 496, 507, 689, 799, 806
FatI	CATG	6 cut(s)	480, 492, 503, 685, 795, 802
FblI	GTMKAC	2 cut(s)	519, 938
Fnu4HI	GCNGC	5 cut(s)	229, 478, 490, 501, 512
FokI	GGATG	2 cut(s)	85, 142
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	5 cut(s)	229, 478, 490, 501, 512
FspBI	CTAG	3 cut(s)	399, 894, 912
GlaI	GCGC	3 cut(s)	428, 486, 488
GluI	GCNGC	5 cut(s)	229, 478, 490, 501, 512
GsaI	CCCAGC	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	1 cut(s)	945
HapII	CCGG	2 cut(s)	508, 789
HhaI	GCGC	3 cut(s)	429, 487, 489
Hin1I	GRCGYC	1 cut(s)	427
Hin1II	CATG	6 cut(s)	484, 496, 507, 689, 799, 806
Hin6I	GCGC	3 cut(s)	427, 485, 487
HinP1I	GCGC	3 cut(s)	427, 485, 487
HincII	GTYRAC	4 cut(s)	84, 255, 349, 520
HindII	GTYRAC	4 cut(s)	84, 255, 349, 520
HindIII	AAGCTT	1 cut(s)	618
HinfI	GANTC	6 cut(s)	184, 290, 296, 350, 831, 853
HpaI	GTTAAC	1 cut(s)	255
HpaII	CCGG	2 cut(s)	508, 789
HphI	GGTGA	2 cut(s)	715, 890
Hpy166II	GTNNAC	8 cut(s)	84, 255, 349, 520, 706, 754, 888, 939
Hpy188I	TCNGA	6 cut(s)	196, 295, 301, 435, 552, 594
Hpy188III	TCNNGA	2 cut(s)	693, 810
Hpy8I	GTNNAC	8 cut(s)	84, 255, 349, 520, 706, 754, 888, 939
Hpy99I	CGWCG	3 cut(s)	417, 463, 559
HpyAV	CCTTC	5 cut(s)	168, 318, 461, 948, 952
HpyCH4III	ACNGT	6 cut(s)	81, 90, 459, 575, 634, 716
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	5 cut(s)	76, 392, 587, 685, 866
HpyF10VI	GCNNNNNNNGC	1 cut(s)	486
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	412
Hsp92I	GRCGYC	1 cut(s)	427
Hsp92II	CATG	6 cut(s)	484, 496, 507, 689, 799, 806
HspAI	GCGC	3 cut(s)	427, 485, 487
KasI	GGCGCC	1 cut(s)	426
KroI	GCCGGC	1 cut(s)	507
KroNI	GCCGGC	1 cut(s)	509
KspAI	GTTAAC	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	304, 441
LmnI	GCTCC	1 cut(s)	799
Lsp1109I	GCAGC	4 cut(s)	489, 501, 512, 523
MaeI	CTAG	3 cut(s)	399, 894, 912
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	2 cut(s)	334, 538
MalI	GATC	2 cut(s)	306, 443
MboI	GATC	2 cut(s)	304, 441
MboII	GAAGA	5 cut(s)	260, 451, 539, 774, 864
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	6 cut(s)	31, 59, 236, 285, 588, 602
Mly113I	GGCGCC	1 cut(s)	427
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	5 cut(s)	214, 276, 397, 417, 588
MroNI	GCCGGC	1 cut(s)	507
MseI	TTAA	4 cut(s)	254, 284, 672, 967
MspI	CCGG	2 cut(s)	508, 789
MspR9I	CCNGG	3 cut(s)	381, 790, 948
MvaI	CCWGG	2 cut(s)	381, 948
MvnI	CGCG	1 cut(s)	487
MwoI	GCNNNNNNNGC	1 cut(s)	486
NaeI	GCCGGC	1 cut(s)	509
NarI	GGCGCC	1 cut(s)	427
NciI	CCSGG	1 cut(s)	790
NdeII	GATC	2 cut(s)	304, 441
NgoMIV	GCCGGC	1 cut(s)	507
NlaIII	CATG	6 cut(s)	484, 496, 507, 689, 799, 806
NlaIV	GGNNCC	3 cut(s)	428, 456, 825
NmeAIII	GCCGAG	1 cut(s)	453
NmuCI	GTSAC	1 cut(s)	538
NspI	RCATGY	3 cut(s)	496, 507, 806
PaeI	GCATGC	2 cut(s)	507, 806
PauI	GCGCGC	1 cut(s)	485
PdiI	GCCGGC	1 cut(s)	509
PfeI	GAWTC	5 cut(s)	184, 290, 296, 831, 853
PkrI	GCNGC	5 cut(s)	230, 479, 491, 502, 513
PleI	GAGTC	1 cut(s)	344
PluTI	GGCGCC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	379, 946
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	2 cut(s)	379, 946
PspN4I	GGNNCC	3 cut(s)	428, 456, 825
PspPI	GGNCC	1 cut(s)	944
PstNI	CAGNNNCTG	2 cut(s)	209, 947
PteI	GCGCGC	1 cut(s)	485
RsaI	GTAC	2 cut(s)	92, 887
RsaNI	GTAC	2 cut(s)	91, 886
SalI	GTCGAC	1 cut(s)	518
SaqAI	TTAA	4 cut(s)	254, 284, 672, 967
SatI	GCNGC	5 cut(s)	229, 478, 490, 501, 512
Sau3AI	GATC	2 cut(s)	304, 441
Sau96I	GGNCC	1 cut(s)	944
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	3 cut(s)	381, 790, 948
SduI	GDGCHC	1 cut(s)	474
SfcI	CTRYAG	1 cut(s)	103
SfoI	GGCGCC	1 cut(s)	428
SpeI	ACTAGT	1 cut(s)	398
SphI	GCATGC	2 cut(s)	507, 806
Sse9I	AATT	6 cut(s)	31, 59, 236, 285, 588, 602
SsiI	CCGC	3 cut(s)	229, 745, 850
SspDI	GGCGCC	1 cut(s)	426
SspMI	CTAG	3 cut(s)	399, 894, 912
StyD4I	CCNGG	3 cut(s)	379, 788, 946
TaaI	ACNGT	6 cut(s)	81, 90, 459, 575, 634, 716
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	3 cut(s)	422, 444, 519
TasI	AATT	6 cut(s)	31, 59, 236, 285, 588, 602
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	5 cut(s)	184, 290, 296, 831, 853
Tru1I	TTAA	4 cut(s)	254, 284, 672, 967
Tru9I	TTAA	4 cut(s)	254, 284, 672, 967
TscAI	CASTG	1 cut(s)	639
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	4 cut(s)	477, 489, 500, 511
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	1 cut(s)	452
TspGWI	ACGGA	2 cut(s)	111, 643
TspRI	CASTG	1 cut(s)	639
XapI	RAATTY	2 cut(s)	59, 236
XceI	RCATGY	3 cut(s)	496, 507, 806
XmiI	GTMKAC	2 cut(s)	519, 938
XspI	CTAG	3 cut(s)	399, 894, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.