Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006344

Physical Location & Seq

Genomic Coordinates Reverse (-)

8177002 .. 8180122

Gene Structure 3121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2529 bp

ATGTTGTTGAATCTTCGTCTAGATGGAAGTAGCTTACATGTTCTCTGTTCTACAAAAACCTTACCGATTTCTTCGCCTCTCGATAAATTCCCATCTTTCAAGAAATTGAAGCAGAATTACGTACCAGGAACTCACGAGAGTGACAAAGGACCACAGAGAAGCACCAGAAATGGCGACAGAGGTTGTGGTACCGTTGCTCATGAAGTTGTCGCCGGAAAAAACTTACTTTTAGTAAACCCAAGTAATGGTTGCGTCGGAAAATCAGGGATCATTGATGGGTTTGTTGATAAGAGAAGTAAAGATGCGAGATTTGGTGGGAATGGTTTGGTTAGTGAAGTGCACACCAAGTGTTCGACGAAACGTCTGAGTTACGGAGGATGTATTCCCGCTATTTTAGAAGCTTTGGATAGTATTGAAGATGTTGAAGATGCGTTGAGTCCGTGGGCAGAGAGGCTTAGTAACAAGGAGAGAACGATTATATTAAAGGAGCAGATACATTGGGAGAGAGCGGTGGAGATATTCGAATGGTTTAAGAGTAAAGGTTGCTATGAATTGAATGTGATTCATTATAATATCATGCTCAGGATACTTGGGAAAGCTTGTAAGTGGAGGTATGTACAGAGTTTATGGGATGAAATGATTAGGAAAGGTATCAAGCCGATTAATTCGACGTATGGGACTCTCATCGATGTTTATAGCAAAGGCGGGCTTAAAGTACATGCGCTTTGTTGGTTAGGGAAGATGAGTAAGATTGGGATGCAGCCTGATGAAGTAACAACAGGGATTGTTCTTCAAATGTATAAGAAGGCAAGAGAGTTTCAAAAAGCAGAGGAGTTTTTCAAGAAATGGTCGTGTGACGAAAACAAGGCGGATTCACATGTTTGCTTGAGCTCTTATACTTACAACACGATGATTGATACGTATGGTAAGTCCGGTCAGATAAAAGAAGCTTCAGAGACGTTTAAGAGGATGCTAGAAGAAGGGATTGTTCCAACCACAGTGACTTTTAATACCATGATTCATATTTATGGCAATAATGGTCAGCTTGGTGAAGTCACTTCTTTGATGAAAACAATGAAGCTTCATTGTGCACCTGATACAAGAACGTATAACATTCTGATTTCACTTCACACGAAGAACAACGATATAGAAAGGGCAGGAGCCTACTTCAAGGAAATGAAAGACGATGGGCTTAAACCGGATCCTGTAAGTTACCGCACTCTCCTATATGCATTCTCGATTAGACATATGGTTGAGGAAGCTGAAGGGCTTATAGCTGAGATGGATGATGATAATGTTGAGATAGATGAGTATACACAATCTGCTCTCACTAGAATGTATGTAGAAGCAGAGATGCTTGAGAAATCATGGTCATGGTTCAAAAGGTTTCATGTTGCGGGTAATATGAGTTCTGAAGGCTATTCAGCCAACATCGATGCATATGGTGAGCGTGGATATTTATCAGAAGCTGAGAGAGTGTTTATCTGCTGCCAAGAAGTGAATAAGAGAACAGTTATTGAGTACAATGTAATGATCAAAGCGTATGGAATTAGTAAAAGCTGTGAAAAGGCATGTGAGTTATTTGAGAGCATGATGAGTTATGGGGTCACACCGGATAAGTGTACATATAATACTCTCGTCCAGATCCTTGCGAGTGCCGACATGCCTCATAAAGGTAGATGCTACTTGGAGAAAATGAGAGAGACGGGATATGTGAGCGATTGCATACCATACTGTGCTGTGATATCGAGCTTTGTGAAACTCGGTCAGCTCAATATGGCAGAGGAAGTGTATAAAGAGATGGTTGAGTACAATATCGAACCTGATGTTGTTGTATATGGAGTCTTGATCAATGCTTTTGCAGATACTGGAAATGTTCAGCAAGCTATGAGTTACGTAGAAGCGATGAAAGAAGCTGGAATCCCGGGAAACTCTGTTATATACAATTCTCTGATTAAGCTCTACACCAAAGTCGGGTACTTAGATGAAGCTGAAGCAATATACAGAAAGCTTCTTCAATCGTGTAACAAGACGCAATATCCGGATGTATATACATCAAACTGTATGATCAACCTGTATAGCGAAAGATCGATGGTGAGAAAAGCAGAAGCTATATTCGATAGCATGAAACAGAGAGGAGAAGCAAACGAGTTTACCTTTGCGATGATGTTATGTATGTACAAGAAGAACGGTCGGTTTGAAGAAGCGACTCAGATAGCAAAACAGATGAGAGAGATGAAGATTCTAACTGATCCGTTGAGCTACAACAGCGTTCTCGGCTTATTCGCTTTAGACGGGAGATTCAAAGAAGCTGTTGAGACATTCAAAGAGATGGTGTCATCTGGAATTCAACCTGATGACTCAACGTTCAAATCACTAGGAACCATTCTGATGAAACTTGGGATGTCGAAAAAAGCTGTTCGTAAGATCGAAGAAATTAGGAAAAAAGAGATCAAGCGAGGATTAGAGCTATGGATCTCAACTCTCTCATCTCTTGTTGGGATTGGAGATTGTGTCGACGAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

842

Amino Acids

95.32

Weight (kDa)

6.59

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	186 - 233	8.9e-08	PPR repeat family
TPR_24	PF23276	294 - 392	3.2e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	294 - 324	4.6e-06	PPR repeat
PPR_3	PF13812	295 - 346	4.4e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	298 - 341	1.4e-12	PPR repeat family
PPR	PF01535	299 - 329	2.1e-08	PPR repeat
PPR_long	PF17177	303 - 463	1.5e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	331 - 375	5e-10	PPR repeat family
PPR_2	PF13041	365 - 412	1.2e-11	PPR repeat family
PPR_2	PF13041	505 - 550	8.1e-10	PPR repeat family
TPR_24	PF23276	506 - 601	2.4e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	511 - 671	8.2e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	563 - 621	1e-05	Pentatricopeptide repeat domain
PPR_2	PF13041	578 - 621	2.3e-09	PPR repeat family
PPR_3	PF13812	597 - 656	3.7e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	681 - 724	2.9e-07	PPR repeat family
PPR_long	PF17177	688 - 815	1.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	754 - 793	9.6e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23020
fragaria_vesca	FvH4_4g02020
malus_domestica	MD13G1203500.v1.1 MD16G1205100.v1.1
prunus_persica	Prupe.1G026500_v2.0.a1
pyrus_communis	pycom13g17680
rosa_chinensis	RchiOBHm_Chr4g0388991 RchiOBHm_Chr4g0389031 RchiOBHm_Chr4g0389081 RchiOBHm_Chr4g0389161 RchiOBHm_Chr4g0389171
rosa_laevigata	RLG00000010001
rosa_multiflora	Rmu_sc0001395.1_g000006
rosa_roxburghii	Rroxscaffold_5G00335330
rosa_rugosa	Rorug03G0321900
rosa_samantha	Rh4AG026400 Rh4BG019600 Rh4BG019800 Rh4BG019900 Rh4BG020200 Rh4BG020300 Rh4CG029400 Rh4DG020000 Rh4DG020400 Rh4DG020500 Rh4DG020900
rosa_wichuraiana	Rw4G001950

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
Acc65I	GGTACC	1 cut(s)	188
AccB1I	GGYRCC	1 cut(s)	188
AccB7I	CCANNNNNTGG	1 cut(s)	245
AccBSI	CCGCTC	1 cut(s)	509
AccI	GTMKAC	2 cut(s)	1313, 2517
AccIII	TCCGGA	1 cut(s)	2041
AciI	CCGC	6 cut(s)	387, 509, 705, 869, 1216, 1397
AclI	AACGTT	1 cut(s)	2366
AclWI	GGATC	6 cut(s)	275, 1196, 1209, 1639, 2246, 2483
AcsI	RAATTY	2 cut(s)	86, 2346
AcuI	CTGAAG	4 cut(s)	936, 1284, 1434, 2013
AdeI	CACNNNGTG	1 cut(s)	348
AfaI	GTAC	9 cut(s)	123, 190, 618, 717, 1523, 1624, 1811, 1979, 2180
AfiI	CCNNNNNNNGG	3 cut(s)	245, 1673, 1974
AflIII	ACRYGT	2 cut(s)	37, 877
AhdI	GACNNNNNGTC	1 cut(s)	360
AjnI	CCWGG	1 cut(s)	124
AleI	CACNNNNGTG	1 cut(s)	138
Alw21I	GWGCWC	3 cut(s)	342, 893, 1093
Alw26I	GTCTC	3 cut(s)	950, 1697, 2312
Alw44I	GTGCAC	2 cut(s)	338, 1089
AlwI	GGATC	6 cut(s)	275, 1196, 1209, 1639, 2246, 2483
AlwNI	CAGNNNCTG	2 cut(s)	1469, 1868
Ama87I	CYCGRG	1 cut(s)	1924
Aor13HI	TCCGGA	1 cut(s)	2041
ApaLI	GTGCAC	2 cut(s)	338, 1089
ApeKI	GCWGC	2 cut(s)	760, 1488
ApoI	RAATTY	2 cut(s)	86, 2346
AseI	ATTAAT	1 cut(s)	663
Asp718I	GGTACC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	724
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	2 cut(s)	1925, 1926
AsuHPI	GGTGA	3 cut(s)	1061, 1457, 2107
AsuII	TTCGAA	1 cut(s)	522
AvaI	CYCGRG	1 cut(s)	1924
AvaII	GGWCC	1 cut(s)	149
BaeGI	GKGCMC	2 cut(s)	342, 1093
BamHI	GGATCC	1 cut(s)	1201
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	893
BarI	GAAGNNNNNNTAC	2 cut(s)	101, 133
BauI	CACGAG	1 cut(s)	134
Bbv12I	GWGCWC	3 cut(s)	342, 893, 1093
BbvI	GCAGC	2 cut(s)	772, 1475
BccI	CCATC	8 cut(s)	17, 100, 269, 1181, 1276, 1795, 2086, 2326
BciT130I	CCWGG	1 cut(s)	126
BciVI	GTATCC	1 cut(s)	579
BclI	TGATCA	3 cut(s)	1533, 1848, 2067
BcnI	CCSGG	2 cut(s)	1925, 1926
BcoDI	GTCTC	3 cut(s)	950, 1697, 2312
BfaI	CTAG	4 cut(s)	20, 974, 1332, 2378
BfuI	GTATCC	1 cut(s)	579
BisI	GCNGC	2 cut(s)	761, 1489
BlsI	GCNGC	2 cut(s)	762, 1490
Bme1390I	CCNGG	3 cut(s)	126, 1925, 1926
Bme18I	GGWCC	1 cut(s)	149
BmeRI	GACNNNNNGTC	1 cut(s)	360
BmeT110I	CYCGRG	1 cut(s)	1924
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	4 cut(s)	190, 1162, 1203, 2383
BmrFI	CCNGG	3 cut(s)	126, 1925, 1926
BmsI	GCATC	7 cut(s)	292, 418, 747, 960, 1344, 1426, 1670
Bpu10I	CCTNAGC	1 cut(s)	581
Bpu14I	TTCGAA	1 cut(s)	522
BpuEI	CTTGAG	2 cut(s)	907, 1379
BpuMI	CCSGG	2 cut(s)	1925, 1926
Bsa29I	ATCGAT	3 cut(s)	687, 1434, 2090
BsaAI	YACGTR	3 cut(s)	121, 921, 1897
BsaBI	GATNNNNATC	1 cut(s)	1459
BsaJI	CCNNGG	2 cut(s)	440, 1924
BsaWI	WCCGGW	4 cut(s)	932, 1198, 1612, 2041
BsaXI	ACNNNNNCTCC	2 cut(s)	2499, 2529
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 1673, 1974
Bse1I	ACTGG	1 cut(s)	1873
Bse8I	GATNNNNATC	1 cut(s)	1459
BseAI	TCCGGA	1 cut(s)	2041
BseBI	CCWGG	1 cut(s)	126
BseCI	ATCGAT	3 cut(s)	687, 1434, 2090
BseDI	CCNNGG	2 cut(s)	440, 1924
BseGI	GGATG	7 cut(s)	383, 637, 762, 975, 1291, 2050, 2409
BseJI	GATNNNNATC	1 cut(s)	1459
BseLI	CCNNNNNNNGG	3 cut(s)	245, 1673, 1974
BseMII	CTCAG	5 cut(s)	356, 595, 1269, 1461, 2225
BseNI	ACTGG	1 cut(s)	1873
BseRI	GAGGAG	2 cut(s)	845, 2151
BseSI	GKGCMC	2 cut(s)	342, 1093
BseXI	GCAGC	2 cut(s)	772, 1475
Bsh1285I	CGRYCG	1 cut(s)	2194
BshNI	GGYRCC	1 cut(s)	188
BshVI	ATCGAT	3 cut(s)	687, 1434, 2090
BsiEI	CGRYCG	1 cut(s)	2194
BsiHKAI	GWGCWC	3 cut(s)	342, 893, 1093
BsiHKCI	CYCGRG	1 cut(s)	1924
BsiSI	CCGG	6 cut(s)	213, 933, 1199, 1613, 1925, 2042
BslFI	GGGAC	1 cut(s)	691
BslI	CCNNNNNNNGG	3 cut(s)	245, 1673, 1974
BsmAI	GTCTC	3 cut(s)	950, 1697, 2312
BsmBI	CGTCTC	2 cut(s)	950, 1697
BsmFI	GGGAC	1 cut(s)	691
BsmI	GAATGC	1 cut(s)	1232
BsoBI	CYCGRG	1 cut(s)	1924
Bsp119I	TTCGAA	1 cut(s)	522
Bsp1286I	GDGCHC	3 cut(s)	342, 893, 1093
Bsp13I	TCCGGA	1 cut(s)	2041
Bsp1407I	TGTACA	3 cut(s)	616, 1622, 2178
BspACI	CCGC	6 cut(s)	387, 509, 705, 869, 1216, 1397
BspCNI	CTCAG	5 cut(s)	357, 594, 1270, 1462, 2224
BspDI	ATCGAT	3 cut(s)	687, 1434, 2090
BspEI	TCCGGA	1 cut(s)	2041
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	4 cut(s)	190, 1162, 1203, 2383
BspPI	GGATC	6 cut(s)	275, 1196, 1209, 1639, 2246, 2483
BspT104I	TTCGAA	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	188
BsrBI	CCGCTC	1 cut(s)	509
BsrGI	TGTACA	3 cut(s)	616, 1622, 2178
BsrI	ACTGG	1 cut(s)	1873
BssECI	CCNNGG	2 cut(s)	440, 1924
BssNAI	GTATAC	1 cut(s)	1314
BssSI	CACGAG	1 cut(s)	134
Bst1107I	GTATAC	1 cut(s)	1314
Bst2BI	CACGAG	1 cut(s)	134
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	6 cut(s)	193, 1000, 1513, 1736, 2063, 2192
BstAUI	TGTACA	3 cut(s)	616, 1622, 2178
BstBAI	YACGTR	3 cut(s)	121, 921, 1897
BstBI	TTCGAA	1 cut(s)	522
BstC8I	GCNNGC	2 cut(s)	707, 1884
BstDEI	CTNAG	7 cut(s)	365, 455, 581, 1278, 1470, 1981, 2211
BstDSI	CCRYGG	1 cut(s)	440
BstENI	CCTNNNNNAGG	1 cut(s)	1671
BstF5I	GGATG	7 cut(s)	383, 637, 762, 975, 1291, 2050, 2409
BstHHI	GCGC	1 cut(s)	724
BstMAI	GTCTC	3 cut(s)	950, 1697, 2312
BstMCI	CGRYCG	1 cut(s)	2194
BstMWI	GCNNNNNNNGC	2 cut(s)	2268, 2277
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	5 cut(s)	41, 722, 881, 1575, 1666
BstSCI	CCNGG	3 cut(s)	124, 1923, 1924
BstSLI	GKGCMC	2 cut(s)	342, 1093
BstSNI	TACGTA	3 cut(s)	121, 921, 1897
BstV1I	GCAGC	2 cut(s)	772, 1475
BstX2I	RGATCY	3 cut(s)	1201, 1644, 2475
BstYI	RGATCY	3 cut(s)	1201, 1644, 2475
BstZ17I	GTATAC	1 cut(s)	1314
Bsu15I	ATCGAT	3 cut(s)	687, 1434, 2090
BsuI	GTATCC	1 cut(s)	579
BsuTUI	ATCGAT	3 cut(s)	687, 1434, 2090
BtgI	CCRYGG	1 cut(s)	440
BtgZI	GCGATG	2 cut(s)	1919, 2177
BtsCI	GGATG	7 cut(s)	383, 637, 762, 975, 1291, 2050, 2409
BtsIMutI	CAGTG	1 cut(s)	1005
Cac8I	GCNNGC	2 cut(s)	707, 1884
CaiI	CAGNNNCTG	2 cut(s)	1469, 1868
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	1 cut(s)	724
Cfr13I	GGNCC	1 cut(s)	149
Cfr9I	CCCGGG	1 cut(s)	1924
ClaI	ATCGAT	3 cut(s)	687, 1434, 2090
CseI	GACGC	2 cut(s)	241, 2041
Csp6I	GTAC	9 cut(s)	122, 189, 617, 716, 1522, 1623, 1810, 1978, 2179
CviQI	GTAC	9 cut(s)	122, 189, 617, 716, 1522, 1623, 1810, 1978, 2179
DdeI	CTNAG	7 cut(s)	365, 455, 581, 1278, 1470, 1981, 2211
DraIII	CACNNNGTG	1 cut(s)	348
DriI	GACNNNNNGTC	1 cut(s)	360
Eam1105I	GACNNNNNGTC	1 cut(s)	360
EciI	GGCGGA	1 cut(s)	884
Ecl136II	GAGCTC	1 cut(s)	891
Eco105I	TACGTA	3 cut(s)	121, 921, 1897
Eco24I	GRGCYC	1 cut(s)	893
Eco32I	GATATC	1 cut(s)	1746
Eco47I	GGWCC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	891
Eco57I	CTGAAG	4 cut(s)	936, 1284, 1434, 2013
Eco88I	CYCGRG	1 cut(s)	1924
EcoICRI	GAGCTC	1 cut(s)	891
EcoNI	CCTNNNNNAGG	1 cut(s)	1671
EcoRI	GAATTC	1 cut(s)	2346
EcoRII	CCWGG	1 cut(s)	124
EcoRV	GATATC	1 cut(s)	1746
EcoT22I	ATGCAT	2 cut(s)	1234, 1441
EcoT38I	GRGCYC	1 cut(s)	893
Esp3I	CGTCTC	2 cut(s)	950, 1697
FalI	AAGNNNNNCTT	2 cut(s)	693, 725
FaqI	GGGAC	1 cut(s)	691
FauI	CCCGC	3 cut(s)	394, 698, 1390
FauNDI	CATATG	2 cut(s)	1248, 1441
FbaI	TGATCA	3 cut(s)	1533, 1848, 2067
FblI	GTMKAC	2 cut(s)	1313, 2517
Fnu4HI	GCNGC	2 cut(s)	761, 1489
FokI	GGATG	7 cut(s)	390, 644, 769, 982, 1298, 2057, 2416
FriOI	GRGCYC	1 cut(s)	893
Fsp4HI	GCNGC	2 cut(s)	761, 1489
FspBI	CTAG	4 cut(s)	20, 974, 1332, 2378
GlaI	GCGC	1 cut(s)	723
GluI	GCNGC	2 cut(s)	761, 1489
HapII	CCGG	6 cut(s)	213, 933, 1199, 1613, 1925, 2042
HgaI	GACGC	2 cut(s)	241, 2041
HhaI	GCGC	1 cut(s)	724
Hin6I	GCGC	1 cut(s)	722
HinP1I	GCGC	1 cut(s)	722
HincII	GTYRAC	1 cut(s)	2518
HindII	GTYRAC	1 cut(s)	2518
HindIII	AAGCTT	5 cut(s)	399, 597, 948, 1079, 2009
HpaII	CCGG	6 cut(s)	213, 933, 1199, 1613, 1925, 2042
HphI	GGTGA	3 cut(s)	1061, 1457, 2107
Hpy166II	GTNNAC	7 cut(s)	235, 340, 1091, 1314, 1623, 2154, 2518
Hpy8I	GTNNAC	7 cut(s)	235, 340, 1091, 1314, 1623, 2154, 2518
Hpy99I	CGWCG	4 cut(s)	257, 358, 673, 2522
HpyAV	CCTTC	4 cut(s)	799, 974, 1259, 1409
HpyCH4III	ACNGT	6 cut(s)	193, 1000, 1513, 1736, 2063, 2192
HpyCH4IV	ACGT	8 cut(s)	120, 361, 671, 920, 959, 1106, 1896, 2366
HpyCH4V	TGCA	7 cut(s)	340, 760, 1091, 1232, 1439, 1725, 1862
HpyF10VI	GCNNNNNNNGC	2 cut(s)	2268, 2277
HpyF3I	CTNAG	7 cut(s)	365, 455, 581, 1278, 1470, 1981, 2211
HpySE526I	ACGT	8 cut(s)	120, 361, 671, 920, 959, 1106, 1896, 2366
HspAI	GCGC	1 cut(s)	722
Kpn2I	TCCGGA	1 cut(s)	2041
KpnI	GGTACC	1 cut(s)	192
Ksp22I	TGATCA	3 cut(s)	1533, 1848, 2067
LmnI	GCTCC	2 cut(s)	487, 1160
Lsp1109I	GCAGC	2 cut(s)	772, 1475
LweI	GCATC	7 cut(s)	292, 418, 747, 960, 1344, 1426, 1670
MaeI	CTAG	4 cut(s)	20, 974, 1332, 2378
MaeII	ACGT	8 cut(s)	120, 361, 671, 920, 959, 1106, 1896, 2366
MbiI	CCGCTC	1 cut(s)	509
MflI	RGATCY	3 cut(s)	1201, 1644, 2475
MhlI	GDGCHC	3 cut(s)	342, 893, 1093
MluCI	AATT	9 cut(s)	86, 104, 115, 551, 664, 1548, 1945, 2346, 2436
MlyI	GAGTC	5 cut(s)	445, 673, 1851, 2203, 2354
MmeI	TCCRAC	2 cut(s)	235, 1016
Mph1103I	ATGCAT	2 cut(s)	1234, 1441
MroI	TCCGGA	1 cut(s)	2041
MseI	TTAA	8 cut(s)	482, 531, 663, 711, 963, 1008, 1194, 1956
MslI	CAYNNNNRTG	5 cut(s)	138, 1026, 1334, 1372, 2390
MspI	CCGG	6 cut(s)	213, 933, 1199, 1613, 1925, 2042
MspR9I	CCNGG	3 cut(s)	126, 1925, 1926
Mva1269I	GAATGC	1 cut(s)	1232
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	2268, 2277
NciI	CCSGG	2 cut(s)	1925, 1926
NdeI	CATATG	2 cut(s)	1248, 1441
NlaIV	GGNNCC	4 cut(s)	190, 1162, 1203, 2383
NmeAIII	GCCGAG	1 cut(s)	2256
NmuCI	GTSAC	5 cut(s)	140, 854, 1000, 1054, 1606
NsiI	ATGCAT	2 cut(s)	1234, 1441
NspI	RCATGY	5 cut(s)	41, 722, 881, 1575, 1666
NspV	TTCGAA	1 cut(s)	522
OliI	CACNNNNGTG	1 cut(s)	138
PagI	TCATGA	1 cut(s)	199
PciI	ACATGT	2 cut(s)	37, 877
PctI	GAATGC	1 cut(s)	1232
PfeI	GAWTC	7 cut(s)	10, 562, 872, 1018, 1920, 2242, 2301
PflMI	CCANNNNNTGG	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	762, 1490
PleI	GAGTC	5 cut(s)	444, 673, 1850, 2203, 2354
PpsI	GAGTC	5 cut(s)	444, 673, 1850, 2203, 2354
Ppu21I	YACGTR	3 cut(s)	121, 921, 1897
PscI	ACATGT	2 cut(s)	37, 877
PshBI	ATTAAT	1 cut(s)	663
PsiI	TTATAA	1 cut(s)	570
Psp124BI	GAGCTC	1 cut(s)	893
Psp1406I	AACGTT	1 cut(s)	2366
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	4 cut(s)	190, 1162, 1203, 2383
PspPI	GGNCC	1 cut(s)	149
PsrI	GAACNNNNNNTAC	2 cut(s)	1393, 1425
PstNI	CAGNNNCTG	2 cut(s)	1469, 1868
PsuI	RGATCY	3 cut(s)	1201, 1644, 2475
RsaI	GTAC	9 cut(s)	123, 190, 618, 717, 1523, 1624, 1811, 1979, 2180
RsaNI	GTAC	9 cut(s)	122, 189, 617, 716, 1522, 1623, 1810, 1978, 2179
RseI	CAYNNNNRTG	5 cut(s)	138, 1026, 1334, 1372, 2390
SacI	GAGCTC	1 cut(s)	893
SalI	GTCGAC	1 cut(s)	2516
SaqAI	TTAA	8 cut(s)	482, 531, 663, 711, 963, 1008, 1194, 1956
SatI	GCNGC	2 cut(s)	761, 1489
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	5 cut(s)	445, 673, 1851, 2203, 2354
ScrFI	CCNGG	3 cut(s)	126, 1925, 1926
SduI	GDGCHC	3 cut(s)	342, 893, 1093
SfaNI	GCATC	7 cut(s)	292, 418, 747, 960, 1344, 1426, 1670
SfuI	TTCGAA	1 cut(s)	522
SinI	GGWCC	1 cut(s)	149
SmaI	CCCGGG	1 cut(s)	1926
SmiMI	CAYNNNNRTG	5 cut(s)	138, 1026, 1334, 1372, 2390
SmlI	CTYRAG	2 cut(s)	886, 1358
SmoI	CTYRAG	2 cut(s)	886, 1358
SnaBI	TACGTA	3 cut(s)	121, 921, 1897
Sse9I	AATT	9 cut(s)	86, 104, 115, 551, 664, 1548, 1945, 2346, 2436
SsiI	CCGC	6 cut(s)	387, 509, 705, 869, 1216, 1397
SspMI	CTAG	4 cut(s)	20, 974, 1332, 2378
SstI	GAGCTC	1 cut(s)	893
StyD4I	CCNGG	3 cut(s)	124, 1923, 1924
TaaI	ACNGT	6 cut(s)	193, 1000, 1513, 1736, 2063, 2192
TaiI	ACGT	8 cut(s)	123, 364, 674, 923, 962, 1109, 1899, 2369
TaqII	GACCGA	1 cut(s)	1754
TasI	AATT	9 cut(s)	86, 104, 115, 551, 664, 1548, 1945, 2346, 2436
TatI	WGTACW	6 cut(s)	616, 715, 1521, 1622, 1809, 2178
TfiI	GAWTC	7 cut(s)	10, 562, 872, 1018, 1920, 2242, 2301
Tru1I	TTAA	8 cut(s)	482, 531, 663, 711, 963, 1008, 1194, 1956
Tru9I	TTAA	8 cut(s)	482, 531, 663, 711, 963, 1008, 1194, 1956
TscAI	CASTG	1 cut(s)	1005
TseFI	GTSAC	5 cut(s)	140, 854, 1000, 1054, 1606
TseI	GCWGC	2 cut(s)	760, 1488
Tsp45I	GTSAC	5 cut(s)	140, 854, 1000, 1054, 1606
TspGWI	ACGGA	3 cut(s)	387, 429, 2244
TspMI	CCCGGG	1 cut(s)	1924
TspRI	CASTG	1 cut(s)	1005
Van91I	CCANNNNNTGG	1 cut(s)	245
VneI	GTGCAC	2 cut(s)	338, 1089
VpaK11BI	GGWCC	1 cut(s)	149
VspI	ATTAAT	1 cut(s)	663
XagI	CCTNNNNNAGG	1 cut(s)	1671
XapI	RAATTY	2 cut(s)	86, 2346
XbaI	TCTAGA	1 cut(s)	19
XceI	RCATGY	5 cut(s)	41, 722, 881, 1575, 1666
XmaI	CCCGGG	1 cut(s)	1924
XmiI	GTMKAC	2 cut(s)	1313, 2517
XspI	CTAG	4 cut(s)	20, 974, 1332, 2378
Zsp2I	ATGCAT	2 cut(s)	1234, 1441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.