Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006344

Physical Location & Seq

Genomic Coordinates Reverse (-)

4293745 .. 4294218

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36233

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTTGACGGCGTTGGAGGAAGTTGAGGACTTGGATGAGGCTCTGGGGCCGTGGGGAGAGACGCTTAGTAACAAGGAAAGGAGCATAATTTTGAAGGAGCAGAGGAGTTGGGAAAGGGCTTTGGAGATTTTCGAGTGGTTTAAGAAGAAGAGGTGTCATGAGTTGCATGTGATTCACTATAATACAGTGCTTAGGATTCTTGGGAAGGCGAAGAAGTGGAGTCATCTAAGGAGTCTTTGGGATGAGATGAATGTGGAAAGAATAGCACCCATTAACTCAACTTATGGAACTTTGATTGATGTTTACAGTAAGGGTGGGTTCGAAAAGGAAGCGCTCATTTGGCTGCAGAGGATGACCAAGCAAGGAATGAAACCTGATGAGGTTACTATGGCCATTGTGCTGCAGTTGTATAAGAAAGCAGGGGAGTACCGAAAAGCTGAGGAGTTTTTTGAGAAATGGTCGGAGAGCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

157

Amino Acids

18.61

Weight (kDa)

6.45

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	38 - 150	1.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	57 - 103	4.8e-06	PPR repeat family
PPR_2	PF13041	94 - 135	7e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0006344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23020
fragaria_vesca	FvH4_4g02020
malus_domestica	MD13G1203500.v1.1 MD16G1205100.v1.1
prunus_persica	Prupe.1G026500_v2.0.a1
pyrus_communis	pycom13g17680
rosa_chinensis	RchiOBHm_Chr4g0388991 RchiOBHm_Chr4g0389031 RchiOBHm_Chr4g0389081 RchiOBHm_Chr4g0389161 RchiOBHm_Chr4g0389171
rosa_laevigata	RLG00000010001
rosa_multiflora	Rmu_sc0001395.1_g000006
rosa_roxburghii	Rroxscaffold_5G00335330
rosa_rugosa	Rorug03G0321900
rosa_samantha	Rh4AG026400 Rh4BG019600 Rh4BG019800 Rh4BG019900 Rh4BG020200 Rh4BG020300 Rh4CG029400 Rh4DG020000 Rh4DG020400 Rh4DG020500 Rh4DG020900
rosa_wichuraiana	Rw4G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	390
AfaI	GTAC	1 cut(s)	428
AfeI	AGCGCT	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	2 cut(s)	437, 468
AluI	AGCT	2 cut(s)	437, 468
Alw21I	GWGCWC	1 cut(s)	470
Alw26I	GTCTC	1 cut(s)	53
Aor51HI	AGCGCT	1 cut(s)	333
AoxI	GGCC	2 cut(s)	47, 390
ApeKI	GCWGC	2 cut(s)	343, 400
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	47
AsuII	TTCGAA	1 cut(s)	321
BalI	TGGCCA	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	470
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	330, 387
BceAI	ACGGC	2 cut(s)	24, 34
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	472
BfmI	CTRYAG	2 cut(s)	344, 401
BfoI	RGCGCY	1 cut(s)	335
BisI	GCNGC	2 cut(s)	344, 401
BlsI	GCNGC	2 cut(s)	345, 402
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	48
Bpu10I	CCTNAGC	2 cut(s)	191, 438
Bpu14I	TTCGAA	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	3 cut(s)	40, 247, 357
BseMII	CTCAG	1 cut(s)	429
BseRI	GAGGAG	2 cut(s)	118, 455
BseXI	GCAGC	2 cut(s)	330, 387
BshFI	GGCC	2 cut(s)	49, 392
BsiHKAI	GWGCWC	1 cut(s)	470
BsmAI	GTCTC	1 cut(s)	53
BsmBI	CGTCTC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	49, 392
Bsp119I	TTCGAA	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	470
BspANI	GGCC	2 cut(s)	49, 392
BspCNI	CTCAG	1 cut(s)	430
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	48
BspMAI	CTGCAG	2 cut(s)	348, 405
BspT104I	TTCGAA	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	187, 308
Bst6I	CTCTTC	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	321
BstDEI	CTNAG	4 cut(s)	65, 191, 227, 438
BstDSI	CCRYGG	1 cut(s)	50
BstF5I	GGATG	3 cut(s)	40, 247, 357
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNSI	RCATGY	1 cut(s)	170
BstSFI	CTRYAG	2 cut(s)	344, 401
BstV1I	GCAGC	2 cut(s)	330, 387
BsuRI	GGCC	2 cut(s)	49, 392
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	3 cut(s)	40, 247, 357
BtsIMutI	CAGTG	1 cut(s)	192
CciI	TCATGA	1 cut(s)	157
CfoI	GCGC	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	47
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	2 cut(s)	158, 167
CviJI	RGCY	7 cut(s)	41, 49, 119, 343, 392, 437, 468
CviKI_1	RGCY	7 cut(s)	41, 49, 119, 343, 392, 437, 468
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	4 cut(s)	65, 191, 227, 438
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	468
Eco24I	GRGCYC	1 cut(s)	470
Eco47III	AGCGCT	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	468
EcoICRI	GAGCTC	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	470
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	2 cut(s)	161, 170
FaiI	YATR	7 cut(s)	86, 159, 168, 180, 285, 389, 411
FatI	CATG	2 cut(s)	157, 166
Fnu4HI	GCNGC	2 cut(s)	344, 401
FokI	GGATG	3 cut(s)	47, 254, 364
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	2 cut(s)	344, 401
FspBI	CTAG	1 cut(s)	472
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	2 cut(s)	344, 401
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	49, 392
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	2 cut(s)	161, 170
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	4 cut(s)	172, 196, 220, 232
Hpy166II	GTNNAC	2 cut(s)	6, 304
Hpy188I	TCNGA	1 cut(s)	463
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	2 cut(s)	6, 304
HpyAV	CCTTC	2 cut(s)	88, 199
HpyCH4III	ACNGT	2 cut(s)	187, 308
HpyCH4V	TGCA	3 cut(s)	166, 346, 403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	4 cut(s)	65, 191, 227, 438
Hsp92II	CATG	2 cut(s)	161, 170
HspAI	GCGC	1 cut(s)	332
LmnI	GCTCC	3 cut(s)	81, 97, 473
LpnPI	CCDG	3 cut(s)	29, 387, 405
Lsp1109I	GCAGC	2 cut(s)	330, 387
MaeI	CTAG	1 cut(s)	472
MaeIII	GTNAC	2 cut(s)	68, 382
MboII	GAAGA	3 cut(s)	157, 160, 223
MhlI	GDGCHC	1 cut(s)	470
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	1 cut(s)	87
MluNI	TGGCCA	1 cut(s)	392
MlyI	GAGTC	2 cut(s)	229, 241
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	8 cut(s)	10, 19, 31, 96, 144, 342, 373, 433
Mox20I	TGGCCA	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	2 cut(s)	141, 273
Msp20I	TGGCCA	1 cut(s)	392
MwoI	GCNNNNNNNGC	1 cut(s)	340
NlaIII	CATG	2 cut(s)	161, 170
NlaIV	GGNNCC	1 cut(s)	48
NspI	RCATGY	1 cut(s)	170
NspV	TTCGAA	1 cut(s)	321
PagI	TCATGA	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	172, 196
PkrI	GCNGC	2 cut(s)	345, 402
PleI	GAGTC	2 cut(s)	228, 240
PpsI	GAGTC	2 cut(s)	228, 240
Psp124BI	GAGCTC	1 cut(s)	470
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	47
PstI	CTGCAG	2 cut(s)	348, 405
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SacI	GAGCTC	1 cut(s)	470
SaqAI	TTAA	2 cut(s)	141, 273
SatI	GCNGC	2 cut(s)	344, 401
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	2 cut(s)	229, 241
SduI	GDGCHC	1 cut(s)	470
SetI	ASST	5 cut(s)	155, 376, 384, 439, 470
SfcI	CTRYAG	2 cut(s)	344, 401
SfuI	TTCGAA	1 cut(s)	321
Sse9I	AATT	1 cut(s)	87
SspMI	CTAG	1 cut(s)	472
SstI	GAGCTC	1 cut(s)	470
TaaI	ACNGT	2 cut(s)	187, 308
TaqI	TCGA	2 cut(s)	132, 321
TasI	AATT	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	172, 196
Tru1I	TTAA	2 cut(s)	141, 273
Tru9I	TTAA	2 cut(s)	141, 273
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	2 cut(s)	343, 400
TspDTI	ATGAA	2 cut(s)	263, 383
TspRI	CASTG	1 cut(s)	192
XceI	RCATGY	1 cut(s)	170
XspI	CTAG	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.