Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G23020 |
| fragaria_vesca | FvH4_4g02020 |
| malus_domestica | MD13G1203500.v1.1 MD16G1205100.v1.1 |
| prunus_persica | Prupe.1G026500_v2.0.a1 |
| pyrus_communis | pycom13g17680 |
| rosa_chinensis | RchiOBHm_Chr4g0388991 RchiOBHm_Chr4g0389031 RchiOBHm_Chr4g0389081 RchiOBHm_Chr4g0389161 RchiOBHm_Chr4g0389171 |
| rosa_laevigata | RLG00000010001 |
| rosa_multiflora | Rmu_sc0001395.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00335330 |
| rosa_rugosa | Rorug03G0321900 |
| rosa_samantha | Rh4AG026400 Rh4BG019600 Rh4BG019800 Rh4BG019900 Rh4BG020200 Rh4BG020300 Rh4CG029400 Rh4DG020000 Rh4DG020400 Rh4DG020500 Rh4DG020900 |
| rosa_wichuraiana | Rw4G001950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 618 |
| AccII | CGCG | 1 cut(s) | 416 |
| AciI | CCGC | 2 cut(s) | 173, 416 |
| AclWI | GGATC | 1 cut(s) | 241 |
| AcsI | RAATTY | 1 cut(s) | 468 |
| AcuI | CTGAAG | 2 cut(s) | 108, 533 |
| AcvI | CACGTG | 1 cut(s) | 352 |
| AfaI | GTAC | 1 cut(s) | 540 |
| AgsI | TTSAA | 3 cut(s) | 125, 307, 573 |
| AluBI | AGCT | 6 cut(s) | 86, 94, 293, 395, 450, 576 |
| AluI | AGCT | 6 cut(s) | 86, 94, 293, 395, 450, 576 |
| Alw21I | GWGCWC | 1 cut(s) | 96 |
| AlwI | GGATC | 1 cut(s) | 241 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 29 |
| ApeKI | GCWGC | 1 cut(s) | 312 |
| ApoI | RAATTY | 1 cut(s) | 468 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 302 |
| AspLEI | GCGC | 1 cut(s) | 416 |
| AsuHPI | GGTGA | 1 cut(s) | 494 |
| BanII | GRGCYC | 1 cut(s) | 96 |
| BbrPI | CACGTG | 1 cut(s) | 352 |
| Bbv12I | GWGCWC | 1 cut(s) | 96 |
| BbvI | GCAGC | 1 cut(s) | 299 |
| BccI | CCATC | 2 cut(s) | 100, 619 |
| BclI | TGATCA | 1 cut(s) | 357 |
| BfaI | CTAG | 2 cut(s) | 156, 477 |
| BfmI | CTRYAG | 1 cut(s) | 451 |
| BisI | GCNGC | 1 cut(s) | 313 |
| BlsI | GCNGC | 1 cut(s) | 314 |
| BmsI | GCATC | 4 cut(s) | 168, 250, 510, 558 |
| BpuEI | CTTGAG | 4 cut(s) | 38, 203, 226, 362 |
| BsaAI | YACGTR | 2 cut(s) | 352, 542 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 518, 548 |
| Bse1I | ACTGG | 1 cut(s) | 400 |
| Bse3DI | GCAATG | 1 cut(s) | 507 |
| BseGI | GGATG | 4 cut(s) | 115, 165, 183, 549 |
| BseMI | GCAATG | 1 cut(s) | 507 |
| BseMII | CTCAG | 2 cut(s) | 234, 285 |
| BseNI | ACTGG | 1 cut(s) | 400 |
| BseXI | GCAGC | 1 cut(s) | 299 |
| Bsh1236I | CGCG | 1 cut(s) | 416 |
| BsiHKAI | GWGCWC | 1 cut(s) | 96 |
| Bsp1286I | GDGCHC | 1 cut(s) | 96 |
| Bsp143I | GATC | 2 cut(s) | 233, 357 |
| BspACI | CCGC | 2 cut(s) | 173, 416 |
| BspCNI | CTCAG | 2 cut(s) | 233, 286 |
| BspFNI | CGCG | 1 cut(s) | 416 |
| BspPI | GGATC | 1 cut(s) | 241 |
| BspQI | GCTCTTC | 1 cut(s) | 84 |
| BsrDI | GCAATG | 1 cut(s) | 507 |
| BsrI | ACTGG | 1 cut(s) | 400 |
| BssMI | GATC | 2 cut(s) | 233, 357 |
| Bst4CI | ACNGT | 1 cut(s) | 389 |
| Bst6I | CTCTTC | 1 cut(s) | 84 |
| BstBAI | YACGTR | 2 cut(s) | 352, 542 |
| BstC8I | GCNNGC | 2 cut(s) | 13, 397 |
| BstDEI | CTNAG | 2 cut(s) | 220, 294 |
| BstF5I | GGATG | 4 cut(s) | 115, 165, 183, 549 |
| BstFNI | CGCG | 1 cut(s) | 416 |
| BstHHI | GCGC | 1 cut(s) | 416 |
| BstKTI | GATC | 2 cut(s) | 236, 360 |
| BstMBI | GATC | 2 cut(s) | 233, 357 |
| BstSFI | CTRYAG | 1 cut(s) | 451 |
| BstUI | CGCG | 1 cut(s) | 416 |
| BstV1I | GCAGC | 1 cut(s) | 299 |
| BstX2I | RGATCY | 1 cut(s) | 233 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 407 |
| BstYI | RGATCY | 1 cut(s) | 233 |
| BtsCI | GGATG | 4 cut(s) | 115, 165, 183, 549 |
| Cac8I | GCNNGC | 2 cut(s) | 13, 397 |
| CaiI | CAGNNNCTG | 1 cut(s) | 29 |
| CfoI | GCGC | 1 cut(s) | 416 |
| Csp6I | GTAC | 1 cut(s) | 539 |
| CviQI | GTAC | 1 cut(s) | 539 |
| DdeI | CTNAG | 2 cut(s) | 220, 294 |
| DpnI | GATC | 2 cut(s) | 235, 359 |
| DpnII | GATC | 2 cut(s) | 233, 357 |
| Eam1104I | CTCTTC | 1 cut(s) | 84 |
| EarI | CTCTTC | 1 cut(s) | 84 |
| Ecl136II | GAGCTC | 1 cut(s) | 94 |
| Eco24I | GRGCYC | 1 cut(s) | 96 |
| Eco53kI | GAGCTC | 1 cut(s) | 94 |
| Eco57I | CTGAAG | 2 cut(s) | 108, 533 |
| Eco72I | CACGTG | 1 cut(s) | 352 |
| EcoICRI | GAGCTC | 1 cut(s) | 94 |
| EcoT22I | ATGCAT | 2 cut(s) | 58, 265 |
| EcoT38I | GRGCYC | 1 cut(s) | 96 |
| FauI | CCCGC | 1 cut(s) | 166 |
| FauNDI | CATATG | 1 cut(s) | 265 |
| FbaI | TGATCA | 1 cut(s) | 357 |
| Fnu4HI | GCNGC | 1 cut(s) | 313 |
| FokI | GGATG | 4 cut(s) | 122, 172, 190, 536 |
| FriOI | GRGCYC | 1 cut(s) | 96 |
| Fsp4HI | GCNGC | 1 cut(s) | 313 |
| FspBI | CTAG | 2 cut(s) | 156, 477 |
| GlaI | GCGC | 1 cut(s) | 415 |
| GluI | GCNGC | 1 cut(s) | 313 |
| HhaI | GCGC | 1 cut(s) | 416 |
| Hin6I | GCGC | 1 cut(s) | 414 |
| HinP1I | GCGC | 1 cut(s) | 414 |
| HindIII | AAGCTT | 1 cut(s) | 574 |
| HinfI | GANTC | 2 cut(s) | 421, 527 |
| HphI | GGTGA | 1 cut(s) | 494 |
| Hpy166II | GTNNAC | 1 cut(s) | 138 |
| Hpy188I | TCNGA | 5 cut(s) | 103, 153, 238, 462, 513 |
| Hpy188III | TCNNGA | 2 cut(s) | 205, 437 |
| Hpy8I | GTNNAC | 1 cut(s) | 138 |
| HpyCH4III | ACNGT | 1 cut(s) | 389 |
| HpyCH4IV | ACGT | 2 cut(s) | 351, 541 |
| HpyCH4V | TGCA | 6 cut(s) | 56, 263, 500, 523, 549, 581 |
| HpyF3I | CTNAG | 2 cut(s) | 220, 294 |
| HpySE526I | ACGT | 2 cut(s) | 351, 541 |
| HspAI | GCGC | 1 cut(s) | 414 |
| Ksp22I | TGATCA | 1 cut(s) | 357 |
| Kzo9I | GATC | 2 cut(s) | 233, 357 |
| LguI | GCTCTTC | 1 cut(s) | 84 |
| LpnPI | CCDG | 8 cut(s) | 36, 42, 207, 413, 427, 450, 509, 516 |
| Lsp1109I | GCAGC | 1 cut(s) | 299 |
| LweI | GCATC | 4 cut(s) | 168, 250, 510, 558 |
| MaeI | CTAG | 2 cut(s) | 156, 477 |
| MaeII | ACGT | 2 cut(s) | 351, 541 |
| MalI | GATC | 2 cut(s) | 235, 359 |
| MboI | GATC | 2 cut(s) | 233, 357 |
| MboII | GAAGA | 4 cut(s) | 101, 337, 526, 529 |
| MfeI | CAATTG | 2 cut(s) | 307, 593 |
| MflI | RGATCY | 1 cut(s) | 233 |
| MhlI | GDGCHC | 1 cut(s) | 96 |
| MluCI | AATT | 6 cut(s) | 126, 307, 432, 468, 584, 593 |
| MlyI | GAGTC | 2 cut(s) | 430, 536 |
| MnlI | CCTC | 1 cut(s) | 601 |
| Mph1103I | ATGCAT | 2 cut(s) | 58, 265 |
| MroXI | GAANNNNTTC | 1 cut(s) | 302 |
| MunI | CAATTG | 2 cut(s) | 307, 593 |
| MvnI | CGCG | 1 cut(s) | 416 |
| NdeI | CATATG | 1 cut(s) | 265 |
| NdeII | GATC | 2 cut(s) | 233, 357 |
| NmeAIII | GCCGAG | 1 cut(s) | 341 |
| NsiI | ATGCAT | 2 cut(s) | 58, 265 |
| PciSI | GCTCTTC | 1 cut(s) | 84 |
| PdmI | GAANNNNTTC | 1 cut(s) | 302 |
| PkrI | GCNGC | 1 cut(s) | 314 |
| PleI | GAGTC | 2 cut(s) | 429, 535 |
| PmaCI | CACGTG | 1 cut(s) | 352 |
| PmlI | CACGTG | 1 cut(s) | 352 |
| PpsI | GAGTC | 2 cut(s) | 429, 535 |
| Ppu21I | YACGTR | 2 cut(s) | 352, 542 |
| PsiI | TTATAA | 1 cut(s) | 618 |
| Psp124BI | GAGCTC | 1 cut(s) | 96 |
| PspCI | CACGTG | 1 cut(s) | 352 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 439, 471 |
| PstNI | CAGNNNCTG | 1 cut(s) | 29 |
| PsuI | RGATCY | 1 cut(s) | 233 |
| RsaI | GTAC | 1 cut(s) | 540 |
| RsaNI | GTAC | 1 cut(s) | 539 |
| SacI | GAGCTC | 1 cut(s) | 96 |
| SapI | GCTCTTC | 1 cut(s) | 84 |
| SatI | GCNGC | 1 cut(s) | 313 |
| Sau3AI | GATC | 2 cut(s) | 233, 357 |
| SchI | GAGTC | 2 cut(s) | 430, 536 |
| SduI | GDGCHC | 1 cut(s) | 96 |
| SfaNI | GCATC | 4 cut(s) | 168, 250, 510, 558 |
| SfcI | CTRYAG | 1 cut(s) | 451 |
| SmlI | CTYRAG | 4 cut(s) | 17, 182, 205, 341 |
| SmoI | CTYRAG | 4 cut(s) | 17, 182, 205, 341 |
| Sse9I | AATT | 6 cut(s) | 126, 307, 432, 468, 584, 593 |
| SsiI | CCGC | 2 cut(s) | 173, 416 |
| SspMI | CTAG | 2 cut(s) | 156, 477 |
| SstI | GAGCTC | 1 cut(s) | 96 |
| TaaI | ACNGT | 1 cut(s) | 389 |
| TaiI | ACGT | 2 cut(s) | 354, 544 |
| TasI | AATT | 6 cut(s) | 126, 307, 432, 468, 584, 593 |
| TseI | GCWGC | 1 cut(s) | 312 |
| TspDTI | ATGAA | 3 cut(s) | 17, 126, 203 |
| XapI | RAATTY | 1 cut(s) | 468 |
| XmnI | GAANNNNTTC | 1 cut(s) | 302 |
| XspI | CTAG | 2 cut(s) | 156, 477 |
| Zsp2I | ATGCAT | 2 cut(s) | 58, 265 |