Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001395.1

Orthogroup ID

OG0006344

Physical Location & Seq

Genomic Coordinates Forward (+)

38652 .. 41174

Gene Structure 2523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001395.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2523 bp

atgcttacgaagctccagatggacttccccattttgggttccacaaggacctcacccaacacaggactccctccactggagaaactagaactcataactagagataggaagcagagagtgcttcacggaggagggttcaagaagggttttggtgaagtttgtagacccagacacagtaatggtggcagtgttgttgttcatgaagttgggttgaagaagcgtggttttgggaagaacccagatgaggagaagggattagagaatctgggtgatggtgggtttgtggaaagaaaggattttggggttgaattggggttggggggtgggaatggtgtggtgaagaaggtgcagaccaagtgttcgacgaaatggctgaattacggtgggtgcattcctgcaatgttgacggcgttggaggaagttgaggacttggatgaggctctgaagccgtggggagagacgcttagtaacaaggaaaggagcataattttgaaggagcagaggagttgggaaagggctttggagattttcgagtggtttaagaagaagaggtgttatgagttgcatgtaattcactataatatagtgcttaggattcttgggaaggcgaagaagtggagtcatctaaggagtctttgggatgagatgaatgtggaaagaatagcacccattaactcaacttatgggactctgattgatgtttacagtaaaggtgggttcgaaaaggaagcgcttatttggctgcagaggatgaccaagcaaggaatgaaacctgatgaggttactatggccattgtgctgcagttgtataagaaagcaggggagtaccgaaaggctgaggagtttttcgagaaatggtcagagagctcgttgcattgtcatggttctttgagctctcatacgtataacacattgatcgacactcgtggaaaggctggccagcttaaagaagcgtcggaaatatttgcatcgatgctgagggaagggattgctccaactacggtgacttttaatacaatgattcacatttgcggtaatcatggtcagcttgctgaagttgcttcgcttatgcagaagatggaagaggttcgatgcccaccagacacgagaacatataatattctgatttccctccatgctaggcatgataatatagacacagctacaaactacttcgcaaagatgaaggaggcttgccttgagccagaccctgtgagttatcgcacccttttgtatgcatactctgtaaggcacatggttagcaaagctgaagagctcatatcagagatggatgaaagggggcttgagattgatgagttcactcattcggctctgactaggatgtatatagaagcggggatgcttgagaagtcttgggtttggttcttgagatttcatctctcagggaaaatgggatctgattgctattctgccaacattgatgcatatggagagcgtgggcatattttggaagctgagaaagttttcaattgctgccgagaagtgaagaagttgagtgtccttgagttcaacgtgatgatcaaagcatatggggttggtaaacattacagtagagcttgccagttgtttgatagcatggagaatcatggtgtaattccggacaggtgtagctgtagttctctgatacaaattttggccagtggtgatatgccacatactgcaatgccttatctgaagaagatgcaggagtcagggttggtacgtgattgcatcccctactgtgctgtgatatcaagctttgcaaaattaggtcaattggaaagggcagaggacgtttataaactgatggttggattcaatgtgcagcctgatgtaattgtctttggggtgttgataaatgcttttgctgaagttggaagcgttaaaaaagctctcggttatgctgatgcaatgaaaagggcaggttttcctgggaacacagttgtttacaataccttgatcaagctctatacaaaagttggccttttgaaagaagcagaagaaacatacaaacttcttcagtcatcagaggatggtcctgctatatatgcctcaaattgtatgattgatctttatagcgagcgatgtatggttaaaccagcagaagaactctttcacagcttgaagagaaagggggatgcaaatgagtttacatttgcaatgatgttgtgcatgtataagagaattgggaggtttgaggaagcccttcagattgcaaagcagatgagagagctgcaacttttaactgatctgctgagttataataatgttattgggttgtatgcgacatatggaagattcaaagaggtggtggaaactttcaaggaaatgacaaaagctgccattcaacctgatgaatgcacattcaaatcactgggacttgttttggtgaaatctggactttcaaagcaggctgtgggaaaactggaagtatcagttaagagggatgctcggagtggtttgcaagcttggatgtcagccctctctgctgttgtcagagtgaatgaaagtagttatatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

840

Amino Acids

94.8

Weight (kDa)

8.29

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23020
fragaria_vesca	FvH4_4g02020
malus_domestica	MD13G1203500.v1.1 MD16G1205100.v1.1
prunus_persica	Prupe.1G026500_v2.0.a1
pyrus_communis	pycom13g17680
rosa_chinensis	RchiOBHm_Chr4g0388991 RchiOBHm_Chr4g0389031 RchiOBHm_Chr4g0389081 RchiOBHm_Chr4g0389161 RchiOBHm_Chr4g0389171
rosa_laevigata	RLG00000010001
rosa_multiflora	Rmu_sc0001395.1_g000006
rosa_roxburghii	Rroxscaffold_5G00335330
rosa_rugosa	Rorug03G0321900
rosa_samantha	Rh4AG026400 Rh4BG019600 Rh4BG019800 Rh4BG019900 Rh4BG020200 Rh4BG020300 Rh4CG029400 Rh4DG020000 Rh4DG020400 Rh4DG020500 Rh4DG020900
rosa_wichuraiana	Rw4G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1800, 2262
Acc36I	ACCTGC	1 cut(s)	1913
AccI	GTMKAC	1 cut(s)	163
AccIII	TCCGGA	1 cut(s)	1618
AciI	CCGC	2 cut(s)	1032, 1355
AclWI	GGATC	1 cut(s)	1423
AcoI	YGGCCR	3 cut(s)	789, 937, 1656
AcsI	RAATTY	1 cut(s)	1650
AcuI	CTGAAG	7 cut(s)	464, 1074, 1290, 1715, 1890, 2003, 2192
AfaI	GTAC	2 cut(s)	827, 1722
AfeI	AGCGCT	1 cut(s)	732
AfiI	CCNNNNNNNGG	5 cut(s)	34, 35, 62, 76, 244
AjnI	CCWGG	1 cut(s)	1930
Alw21I	GWGCWC	3 cut(s)	869, 896, 1278
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	1 cut(s)	1423
AlwNI	CAGNNNCTG	1 cut(s)	1211
Aor13HI	TCCGGA	1 cut(s)	1618
Aor51HI	AGCGCT	1 cut(s)	732
AoxI	GGCC	4 cut(s)	789, 937, 1656, 1981
ApeKI	GCWGC	6 cut(s)	742, 799, 1494, 1825, 2233, 2339
ApoI	RAATTY	1 cut(s)	1650
ArsI	GACNNNNNNTTYG	2 cut(s)	343, 375
Asp700I	GAANNNNTTC	4 cut(s)	1086, 1484, 2112, 2205
AspLEI	GCGC	1 cut(s)	733
AspS9I	GGNCC	2 cut(s)	48, 2036
AsuHPI	GGTGA	7 cut(s)	45, 164, 281, 349, 1015, 1676, 2401
AsuII	TTCGAA	1 cut(s)	720
AvaII	GGWCC	2 cut(s)	48, 2036
BalI	TGGCCA	3 cut(s)	791, 939, 1658
BanII	GRGCYC	3 cut(s)	869, 896, 1278
BauI	CACGAG	2 cut(s)	924, 1105
Bbv12I	GWGCWC	3 cut(s)	869, 896, 1278
BbvCI	CCTCAGC	2 cut(s)	837, 977
BbvI	GCAGC	6 cut(s)	729, 786, 1481, 1837, 2220, 2326
BccI	CCATC	6 cut(s)	13, 266, 1072, 1282, 1801, 2027
BceAI	ACGGC	2 cut(s)	423, 433
BciT130I	CCWGG	1 cut(s)	1932
BclI	TGATCA	2 cut(s)	1539, 1959
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	4 cut(s)	86, 99, 1140, 1338
BfmI	CTRYAG	3 cut(s)	743, 800, 1633
BfoI	RGCGCY	1 cut(s)	734
BfuAI	ACCTGC	1 cut(s)	1913
BisI	GCNGC	6 cut(s)	743, 800, 1495, 1826, 2234, 2340
BlsI	GCNGC	6 cut(s)	744, 801, 1496, 1827, 2235, 2341
Bme1390I	CCNGG	1 cut(s)	1932
Bme18I	GGWCC	2 cut(s)	48, 2036
BmgT120I	GGNCC	2 cut(s)	48, 2036
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	1932
BmrI	ACTGGG	1 cut(s)	2384
BmuI	ACTGGG	1 cut(s)	2384
BplI	GAGNNNNNCTC	2 cut(s)	2434, 2466
BpmI	CTGGAG	1 cut(s)	98
Bpu10I	CCTNAGC	3 cut(s)	590, 837, 977
Bpu14I	TTCGAA	1 cut(s)	720
BpuEI	CTTGAG	5 cut(s)	1220, 1325, 1385, 1408, 1544
Bsa29I	ATCGAT	1 cut(s)	971
BsaAI	YACGTR	2 cut(s)	903, 1724
BsaJI	CCNNGG	2 cut(s)	449, 1931
BsaWI	WCCGGW	1 cut(s)	1618
BsaXI	ACNNNNNCTCC	2 cut(s)	1700, 1730
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 35, 62, 76, 244
Bse1I	ACTGG	5 cut(s)	81, 1582, 1659, 2379, 2430
Bse3DI	GCAATG	4 cut(s)	405, 1689, 1917, 2166
BseAI	TCCGGA	1 cut(s)	1618
BseBI	CCWGG	1 cut(s)	1932
BseCI	ATCGAT	1 cut(s)	971
BseDI	CCNNGG	2 cut(s)	449, 1931
BseLI	CCNNNNNNNGG	5 cut(s)	34, 35, 62, 76, 244
BseMI	GCAATG	4 cut(s)	405, 1689, 1917, 2166
BseMII	CTCAG	5 cut(s)	828, 968, 1416, 1467, 2246
BseNI	ACTGG	5 cut(s)	81, 1582, 1659, 2379, 2430
BseRI	GAGGAG	4 cut(s)	144, 260, 517, 854
BseXI	GCAGC	6 cut(s)	729, 786, 1481, 1837, 2220, 2326
BsgI	GTGCAG	2 cut(s)	368, 1844
BshFI	GGCC	4 cut(s)	791, 939, 1658, 1983
BshVI	ATCGAT	1 cut(s)	971
BsiHKAI	GWGCWC	3 cut(s)	869, 896, 1278
BsiSI	CCGG	1 cut(s)	1619
BslFI	GGGAC	2 cut(s)	700, 2391
BslI	CCNNNNNNNGG	5 cut(s)	34, 35, 62, 76, 244
BsmAI	GTCTC	1 cut(s)	452
BsmBI	CGTCTC	1 cut(s)	452
BsmFI	GGGAC	2 cut(s)	700, 2391
BsmI	GAATGC	2 cut(s)	390, 2363
BsnI	GGCC	4 cut(s)	791, 939, 1658, 1983
Bsp119I	TTCGAA	1 cut(s)	720
Bsp1286I	GDGCHC	3 cut(s)	869, 896, 1278
Bsp13I	TCCGGA	1 cut(s)	1618
Bsp143I	GATC	6 cut(s)	915, 1415, 1539, 1959, 2068, 2248
BspACI	CCGC	2 cut(s)	1032, 1355
BspANI	GGCC	4 cut(s)	791, 939, 1658, 1983
BspCNI	CTCAG	5 cut(s)	829, 969, 1415, 1468, 2247
BspDI	ATCGAT	1 cut(s)	971
BspEI	TCCGGA	1 cut(s)	1618
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	2 cut(s)	747, 804
BspMI	ACCTGC	1 cut(s)	1913
BspPI	GGATC	1 cut(s)	1423
BspQI	GCTCTTC	1 cut(s)	1266
BspT104I	TTCGAA	1 cut(s)	720
BsrDI	GCAATG	4 cut(s)	405, 1689, 1917, 2166
BsrI	ACTGG	5 cut(s)	81, 1582, 1659, 2379, 2430
BssECI	CCNNGG	2 cut(s)	449, 1931
BssMI	GATC	6 cut(s)	915, 1415, 1539, 1959, 2068, 2248
BssSI	CACGAG	2 cut(s)	924, 1105
Bst2BI	CACGAG	2 cut(s)	924, 1105
Bst2UI	CCWGG	1 cut(s)	1932
Bst4CI	ACNGT	7 cut(s)	176, 383, 707, 1003, 1571, 1742, 1942
Bst6I	CTCTTC	4 cut(s)	542, 1077, 1266, 2120
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstBAI	YACGTR	2 cut(s)	903, 1724
BstBI	TTCGAA	1 cut(s)	720
BstC8I	GCNNGC	8 cut(s)	937, 941, 1050, 1195, 1579, 2081, 2412, 2466
BstDEI	CTNAG	8 cut(s)	464, 590, 626, 837, 977, 1402, 1476, 2255
BstDSI	CCRYGG	1 cut(s)	449
BstH2I	RGCGCY	1 cut(s)	734
BstHHI	GCGC	1 cut(s)	733
BstKTI	GATC	6 cut(s)	918, 1418, 1542, 1962, 2071, 2251
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	6 cut(s)	915, 1415, 1539, 1959, 2068, 2248
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 118, 739, 1058, 2048, 2486
BstNI	CCWGG	1 cut(s)	1932
BstNSI	RCATGY	2 cut(s)	569, 2176
BstSCI	CCNGG	1 cut(s)	1930
BstSFI	CTRYAG	3 cut(s)	743, 800, 1633
BstSNI	TACGTA	1 cut(s)	903
BstV1I	GCAGC	6 cut(s)	729, 786, 1481, 1837, 2220, 2326
BstX2I	RGATCY	1 cut(s)	1415
BstYI	RGATCY	1 cut(s)	1415
Bsu15I	ATCGAT	1 cut(s)	971
BsuRI	GGCC	4 cut(s)	791, 939, 1658, 1983
BsuTUI	ATCGAT	1 cut(s)	971
BtgI	CCRYGG	1 cut(s)	449
BtgZI	GCGATG	1 cut(s)	2098
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	4 cut(s)	74, 193, 1666, 2372
BveI	ACCTGC	1 cut(s)	1913
Cac8I	GCNNGC	8 cut(s)	937, 941, 1050, 1195, 1579, 2081, 2412, 2466
CaiI	CAGNNNCTG	1 cut(s)	1211
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	1 cut(s)	733
Cfr13I	GGNCC	2 cut(s)	48, 2036
ClaI	ATCGAT	1 cut(s)	971
CseI	GACGC	2 cut(s)	469, 942
Csp6I	GTAC	2 cut(s)	826, 1721
CviQI	GTAC	2 cut(s)	826, 1721
DdeI	CTNAG	8 cut(s)	464, 590, 626, 837, 977, 1402, 1476, 2255
DpnI	GATC	6 cut(s)	917, 1417, 1541, 1961, 2070, 2250
DpnII	GATC	6 cut(s)	915, 1415, 1539, 1959, 2068, 2248
EaeI	YGGCCR	3 cut(s)	789, 937, 1656
Eam1104I	CTCTTC	4 cut(s)	542, 1077, 1266, 2120
EarI	CTCTTC	4 cut(s)	542, 1077, 1266, 2120
Ecl136II	GAGCTC	3 cut(s)	867, 894, 1276
Eco105I	TACGTA	1 cut(s)	903
Eco24I	GRGCYC	3 cut(s)	869, 896, 1278
Eco32I	GATATC	1 cut(s)	1752
Eco47I	GGWCC	2 cut(s)	48, 2036
Eco47III	AGCGCT	1 cut(s)	732
Eco53kI	GAGCTC	3 cut(s)	867, 894, 1276
Eco57I	CTGAAG	7 cut(s)	464, 1074, 1290, 1715, 1890, 2003, 2192
EcoICRI	GAGCTC	3 cut(s)	867, 894, 1276
EcoO109I	RGGNCCY	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	1930
EcoRV	GATATC	1 cut(s)	1752
EcoT22I	ATGCAT	2 cut(s)	1240, 1447
EcoT38I	GRGCYC	3 cut(s)	869, 896, 1278
Esp3I	CGTCTC	1 cut(s)	452
FalI	AAGNNNNNCTT	2 cut(s)	1968, 2000
FaqI	GGGAC	2 cut(s)	700, 2391
FauI	CCCGC	1 cut(s)	1348
FauNDI	CATATG	3 cut(s)	1447, 1549, 2290
FbaI	TGATCA	2 cut(s)	1539, 1959
FblI	GTMKAC	1 cut(s)	163
Fnu4HI	GCNGC	6 cut(s)	743, 800, 1495, 1826, 2234, 2340
FriOI	GRGCYC	3 cut(s)	869, 896, 1278
Fsp4HI	GCNGC	6 cut(s)	743, 800, 1495, 1826, 2234, 2340
FspBI	CTAG	4 cut(s)	86, 99, 1140, 1338
GlaI	GCGC	1 cut(s)	732
GluI	GCNGC	6 cut(s)	743, 800, 1495, 1826, 2234, 2340
GsuI	CTGGAG	1 cut(s)	98
HaeII	RGCGCY	1 cut(s)	734
HaeIII	GGCC	4 cut(s)	791, 939, 1658, 1983
HapII	CCGG	1 cut(s)	1619
HgaI	GACGC	2 cut(s)	469, 942
HhaI	GCGC	1 cut(s)	733
Hin6I	GCGC	1 cut(s)	731
HinP1I	GCGC	1 cut(s)	731
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HindIII	AAGCTT	2 cut(s)	1756, 2466
HpaII	CCGG	1 cut(s)	1619
HphI	GGTGA	7 cut(s)	45, 164, 281, 349, 1015, 1676, 2401
Hpy166II	GTNNAC	7 cut(s)	164, 405, 703, 1320, 1562, 1948, 2151
Hpy188III	TCNNGA	7 cut(s)	16, 139, 200, 850, 1387, 1619, 2397
Hpy8I	GTNNAC	7 cut(s)	164, 405, 703, 1320, 1562, 1948, 2151
Hpy99I	CGWCG	2 cut(s)	367, 958
HpyAV	CCTTC	8 cut(s)	136, 244, 337, 487, 598, 977, 1180, 2216
HpyCH4III	ACNGT	7 cut(s)	176, 383, 707, 1003, 1571, 1742, 1942
HpyCH4IV	ACGT	4 cut(s)	902, 1533, 1723, 1794
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 118, 739, 1058, 2048, 2486
HpyF3I	CTNAG	8 cut(s)	464, 590, 626, 837, 977, 1402, 1476, 2255
HpySE526I	ACGT	4 cut(s)	902, 1533, 1723, 1794
HspAI	GCGC	1 cut(s)	731
Kpn2I	TCCGGA	1 cut(s)	1618
Ksp22I	TGATCA	2 cut(s)	1539, 1959
Kzo9I	GATC	6 cut(s)	915, 1415, 1539, 1959, 2068, 2248
LguI	GCTCTTC	1 cut(s)	1266
LmnI	GCTCC	4 cut(s)	18, 480, 496, 997
Lsp1109I	GCAGC	6 cut(s)	729, 786, 1481, 1837, 2220, 2326
MaeI	CTAG	4 cut(s)	86, 99, 1140, 1338
MaeII	ACGT	4 cut(s)	902, 1533, 1723, 1794
MaeIII	GTNAC	3 cut(s)	467, 781, 1003
MalI	GATC	6 cut(s)	917, 1417, 1541, 1961, 2070, 2250
MboI	GATC	6 cut(s)	915, 1415, 1539, 1959, 2068, 2248
MfeI	CAATTG	2 cut(s)	1489, 1775
MflI	RGATCY	1 cut(s)	1415
MhlI	GDGCHC	3 cut(s)	869, 896, 1278
MlsI	TGGCCA	3 cut(s)	791, 939, 1658
MluNI	TGGCCA	3 cut(s)	791, 939, 1658
MlyI	GAGTC	5 cut(s)	60, 628, 640, 682, 1718
MmeI	TCCRAC	5 cut(s)	393, 936, 1019, 1792, 1855
Mox20I	TGGCCA	3 cut(s)	791, 939, 1658
Mph1103I	ATGCAT	2 cut(s)	1240, 1447
MroI	TCCGGA	1 cut(s)	1618
MroXI	GAANNNNTTC	4 cut(s)	1086, 1484, 2112, 2205
MscI	TGGCCA	3 cut(s)	791, 939, 1658
MseI	TTAA	8 cut(s)	540, 672, 945, 1011, 1884, 2094, 2243, 2439
MslI	CAYNNNNRTG	2 cut(s)	177, 879
Msp20I	TGGCCA	3 cut(s)	791, 939, 1658
MspI	CCGG	1 cut(s)	1619
MspR9I	CCNGG	1 cut(s)	1932
MunI	CAATTG	2 cut(s)	1489, 1775
Mva1269I	GAATGC	2 cut(s)	390, 2363
MvaI	CCWGG	1 cut(s)	1932
MwoI	GCNNNNNNNGC	6 cut(s)	10, 118, 739, 1058, 2048, 2486
NdeI	CATATG	3 cut(s)	1447, 1549, 2290
NdeII	GATC	6 cut(s)	915, 1415, 1539, 1959, 2068, 2248
NlaIV	GGNNCC	1 cut(s)	40
NmeAIII	GCCGAG	1 cut(s)	1523
NmuCI	GTSAC	1 cut(s)	1003
NsiI	ATGCAT	2 cut(s)	1240, 1447
NspI	RCATGY	2 cut(s)	569, 2176
NspV	TTCGAA	1 cut(s)	720
PagI	TCATGA	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	1266
PctI	GAATGC	2 cut(s)	390, 2363
PdmI	GAANNNNTTC	4 cut(s)	1086, 1484, 2112, 2205
PfeI	GAWTC	6 cut(s)	262, 595, 1021, 1603, 1815, 2298
PkrI	GCNGC	6 cut(s)	744, 801, 1496, 1827, 2235, 2341
PleI	GAGTC	5 cut(s)	60, 627, 639, 682, 1717
PpsI	GAGTC	5 cut(s)	60, 627, 639, 682, 1717
Ppu21I	YACGTR	2 cut(s)	903, 1724
PpuMI	RGGWCCY	1 cut(s)	48
PsiI	TTATAA	2 cut(s)	1800, 2262
Psp124BI	GAGCTC	3 cut(s)	869, 896, 1278
Psp5II	RGGWCCY	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	1930
PspGI	CCWGG	1 cut(s)	1930
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	2 cut(s)	48, 2036
PspPPI	RGGWCCY	1 cut(s)	48
PsrI	GAACNNNNNNTAC	2 cut(s)	1621, 1653
PstI	CTGCAG	2 cut(s)	747, 804
PstNI	CAGNNNCTG	1 cut(s)	1211
PsuI	RGATCY	1 cut(s)	1415
RsaI	GTAC	2 cut(s)	827, 1722
RsaNI	GTAC	2 cut(s)	826, 1721
RseI	CAYNNNNRTG	2 cut(s)	177, 879
SacI	GAGCTC	3 cut(s)	869, 896, 1278
SapI	GCTCTTC	1 cut(s)	1266
SaqAI	TTAA	8 cut(s)	540, 672, 945, 1011, 1884, 2094, 2243, 2439
SatI	GCNGC	6 cut(s)	743, 800, 1495, 1826, 2234, 2340
Sau3AI	GATC	6 cut(s)	915, 1415, 1539, 1959, 2068, 2248
Sau96I	GGNCC	2 cut(s)	48, 2036
SchI	GAGTC	5 cut(s)	60, 628, 640, 682, 1718
ScrFI	CCNGG	1 cut(s)	1932
SduI	GDGCHC	3 cut(s)	869, 896, 1278
SfcI	CTRYAG	3 cut(s)	743, 800, 1633
SfuI	TTCGAA	1 cut(s)	720
SinI	GGWCC	2 cut(s)	48, 2036
SmiMI	CAYNNNNRTG	2 cut(s)	177, 879
SmlI	CTYRAG	5 cut(s)	1199, 1304, 1364, 1387, 1523
SmoI	CTYRAG	5 cut(s)	1199, 1304, 1364, 1387, 1523
SnaBI	TACGTA	1 cut(s)	903
SsiI	CCGC	2 cut(s)	1032, 1355
SspI	AATATT	2 cut(s)	963, 1120
SspMI	CTAG	4 cut(s)	86, 99, 1140, 1338
SstI	GAGCTC	3 cut(s)	869, 896, 1278
StyD4I	CCNGG	1 cut(s)	1930
TaaI	ACNGT	7 cut(s)	176, 383, 707, 1003, 1571, 1742, 1942
TaiI	ACGT	4 cut(s)	905, 1536, 1726, 1797
TaqI	TCGA	7 cut(s)	362, 531, 720, 849, 918, 971, 1090
TfiI	GAWTC	6 cut(s)	262, 595, 1021, 1603, 1815, 2298
Tru1I	TTAA	8 cut(s)	540, 672, 945, 1011, 1884, 2094, 2243, 2439
Tru9I	TTAA	8 cut(s)	540, 672, 945, 1011, 1884, 2094, 2243, 2439
TscAI	CASTG	4 cut(s)	81, 193, 1666, 2379
TseFI	GTSAC	1 cut(s)	1003
TseI	GCWGC	6 cut(s)	742, 799, 1494, 1825, 2233, 2339
Tsp45I	GTSAC	1 cut(s)	1003
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	4 cut(s)	81, 193, 1666, 2379
VpaK11BI	GGWCC	2 cut(s)	48, 2036
XapI	RAATTY	1 cut(s)	1650
XceI	RCATGY	2 cut(s)	569, 2176
XmiI	GTMKAC	1 cut(s)	163
XmnI	GAANNNNTTC	4 cut(s)	1086, 1484, 2112, 2205
XspI	CTAG	4 cut(s)	86, 99, 1140, 1338
Zsp2I	ATGCAT	2 cut(s)	1240, 1447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.