Rh4DG020000

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0006344
Physical Location & Seq
Reverse (-)
3113127 .. 3116309
3183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG020000.1

Sequence Viewer

Length: 2523 bp
ATGCTTGCCAAGCTCCAGCTGGACTTCCCCGTTTTGGGTTCCACGAGGACCTCACCCAACACAGGACTCCCTCCACTGGAGAAACTCGAACTCATAACCAGAGATAGGAAGCAGAGAGTGCTTCACGGAGGAGGGTTCAAGAAGGGTTTTGGTGAAGTTTGTAGACCCAGACACAGTAATGGTGGCAGTGTTGTTGTTCATGAAGTTGGGTTGAAGAAGCGTGGGTTTGTGAAGAGCCCAGATGAGGAAAAGGGATTAGAGAATCTGGTTGATGGTGGGTTTGTGGAAAGAAAGGATTTTGGGGTTGAATTGAGGTTGGGGGGTGGGAATGGTGTGGTGAAGAAAGTGCAGACCAAGTGTTCGACGAAATGGCTGAGTTACGGCGGGTGCATTCCGGCAATGTTGACGGCGTTGGAGGAAGTTGAGGACTTGGATGAGGCTCTGAGGCCGTGGGGAGAGACGCTTAGTAACAAGGAAAGGAGCATAATTTTGAAGGAGCAGAGGAGTTGGGGAAGAGCTTTGGAGATTTTCGAGTGGTTTAAGAAGAAGGGGTGTTATGAGTTGCATGTGATTCACTATAATATAGTGCTTAGGATTCTTGGGAAGGCGAAGAAGTGGAGTCATCTAAGGAGTCTTTGGGATGAGATGAATGTGGAAAGAATAGCACCTATTAACTCAACTTATGGGACTTTGATTGATGTTTACAGTAAAGGTGGGTTCGAAAAGGAAGCGCTTATTTGGCTGCAGAGGATGACCAAGCAAGGAATGAAGCCTGATGAGGTTACTATGGCCATTGTGCTGCAGTTGTATAAGAAAGCAGGGGAGTACCGTAAGGCTGAGGAGTTTTTTGAGAAATGGTCGGAGAGCTCGTTACATTGTCATGGTTCTTTGAGCTCGCATACGTATAACACATTGATCGACACGCATGGAAAGGCTGGCCAGCTTAAAGAAGCGTCGGAAATATTTGCATCGATGCTGAGGGAAGGGATTGCTCCAACTACAGTGACTTTTAATACAATGATTCACATTTGCGGTAATCATGGTCAGCTTGCTGAAGTTGCTTCGCTTATGCAGAAGATGGAAGAGGTTCGATGCCCACCAGACACGCGAACATATAATATTCTGATTTCCCTCCATGCTAGGCATGATAATATAGACACAGCTACAAACTACTTTGCAAAGATGAAGGAGGCTTGCCTCGAGCCTGACCTTGTGAGTTATCGCACCCTTTTGTATGCATACTCTGTAAGGCACATGGTTAGCAAAGCTGAAGAGCTCATATCAGAGATGGATGAAAGGGGACTTGAGATTGATGAGTTCACTCATTCGGCTCTGACTAGGATGTACATAGAAGCGGGGATGCTTGAGAAGTCTTGGGTTTGGTTCATGAGATTTCATCTCTCAGGGAAAATGGGATCTGATTGCTATTCTGCCAACATTGATGCATATGGAGAGCGTGGGCATATTTTGGAAGCTGAGAAAGTTTTCAATTGCTGCCGAGAAGTGAAGAAGTTGAGTGTCCTTGAGTTCAATGTGATGATCAAAGCATATGGGGTTGGTAAACATTACAGTAGAGCTTGCCAGTTGTTTGATAGCATGGAAAGTCATGGTGTAATTCCGGACAGGTGTAGCTATAGTTCTCTGATACAAATTTTGGCTAGTGGTGATATGCCACATACTGCAATGCCTTATCTGAAGAAGATGCAGGAGTCAGGGTTGGTACGTGATTGCATCCCCTATTGTGCTGTGATATCAAGCTTTGCAAAATTAGGTCAATTGGAAAGTGCAGAGGACGTTTATAAACAGATGGTTGGATTCAATGTGCAGCCTGATGTAATTGTCTTTGGGGTGTTGATAAATGCTTTTGCTGAAGTTGGAAGCGTTAAAAAAGCTCTCGGTTATGCTGATGCAATGAAAAGGGCAGGTTTCCCTGGGAACACAGTTGTTTACAATACCTTGATCAAGCTCTATACAAAAGTTGGCCTTTTGAAAGAAGCAGAAGAAACATACAAACTTCTTCAGTCATCAGAGGATGGTCCTGCTATATATGCCTCAAATTGTATGATTGATCTTTATAGCGAGCGATGTATGGTTAAACCAGCAGAAGAACTCTTTGACAGCTTGAAGAGAAAGGGGGATGCAAATGAGTTTACATTTGCAATGATGTTGTGCATGTATAAGAGAATTGGGAGGTTTGAGGAAGCCCTTCAGATTGCAAAGCAGATGAGAGAGCTGCGACTTTTAACTGATCTGCTGAGTTATAATAATGTTATTGGGTTGTATGCGACATATGGAAGATTCAAAGAGGTGGTGGAAACTTTCAAGGAAATGACAAAAGCTGCCATTCAACCTGATGAAGGCACATTCAAATCACTGGGACTTGTTTTGGTGAAATCTGGACTTTCAAAGCAGGCTGTGGGAAAACTGGAAGTATCAGTTAAGAGGGATGCTCGGAGTGGTTTGCAAGCTTGGATGTCAGCCCTCTCTGCTGTTGTCAGAGTGAATGAAAGTAGTTACATGTAG

Protein Analysis

840

Amino Acids

94.68

Weight (kDa)

8.22

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 296 - 394 5.3e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 299 - 342 1.9e-12 PPR repeat family
PPR_3 PF13812 300 - 346 1.4e-09 Pentatricopeptide repeat domain
PPR PF01535 301 - 330 2.1e-06 PPR repeat
PPR_long PF17177 302 - 459 1.2e-13 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 332 - 378 4.9e-12 PPR repeat family
PPR_2 PF13041 367 - 414 1.6e-08 PPR repeat family
PPR_2 PF13041 402 - 447 4.7e-07 PPR repeat family
TPR_24 PF23276 501 - 603 2.6e-08 Fungal tetratrico peptide repeats
PPR_2 PF13041 510 - 553 1.1e-07 PPR repeat family
PPR_long PF17177 522 - 675 3.4e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 580 - 623 1.3e-06 PPR repeat family
PPR_2 PF13041 751 - 792 4.1e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1800, 2262
Acc36I ACCTGC 1 cut(s) 1913
AccI GTMKAC 1 cut(s) 163
AccII CGCG 1 cut(s) 1108
AccIII TCCGGA 1 cut(s) 1618
AciI CCGC 3 cut(s) 384, 1032, 1355
AclWI GGATC 1 cut(s) 1423
AcoI YGGCCR 2 cut(s) 789, 937
AcsI RAATTY 1 cut(s) 1650
AcuI CTGAAG 6 cut(s) 1074, 1290, 1715, 1890, 2003, 2192
AfaI GTAC 3 cut(s) 827, 1346, 1722
AfeI AGCGCT 1 cut(s) 732
AfiI CCNNNNNNNGG 7 cut(s) 34, 35, 62, 76, 105, 244, 2357
AflIII ACRYGT 1 cut(s) 2517
AjnI CCWGG 1 cut(s) 1930
Alw21I GWGCWC 3 cut(s) 869, 896, 1278
Alw26I GTCTC 1 cut(s) 452
AlwI GGATC 1 cut(s) 1423
Ama87I CYCGRG 1 cut(s) 1199
Aor13HI TCCGGA 1 cut(s) 1618
Aor51HI AGCGCT 1 cut(s) 732
AoxI GGCC 4 cut(s) 446, 789, 937, 1981
ApeKI GCWGC 6 cut(s) 742, 799, 1494, 1825, 2233, 2339
ApoI RAATTY 1 cut(s) 1650
ArsI GACNNNNNNTTYG 2 cut(s) 343, 375
Asp700I GAANNNNTTC 3 cut(s) 1086, 1484, 2205
AspLEI GCGC 1 cut(s) 733
AspS9I GGNCC 2 cut(s) 48, 2036
AsuHPI GGTGA 5 cut(s) 45, 164, 349, 1676, 2401
AsuII TTCGAA 1 cut(s) 720
AvaI CYCGRG 1 cut(s) 1199
AvaII GGWCC 2 cut(s) 48, 2036
BalI TGGCCA 2 cut(s) 791, 939
BanII GRGCYC 4 cut(s) 239, 869, 896, 1278
BauI CACGAG 1 cut(s) 43
Bbv12I GWGCWC 3 cut(s) 869, 896, 1278
BbvCI CCTCAGC 2 cut(s) 837, 977
BbvI GCAGC 6 cut(s) 729, 786, 1481, 1837, 2220, 2326
BccI CCATC 5 cut(s) 266, 1072, 1282, 1801, 2027
BceAI ACGGC 3 cut(s) 397, 423, 433
BciT130I CCWGG 1 cut(s) 1932
BclI TGATCA 2 cut(s) 1539, 1959
BcoDI GTCTC 1 cut(s) 452
BfaI CTAG 3 cut(s) 1140, 1338, 1659
BfmI CTRYAG 4 cut(s) 743, 800, 999, 1633
BfoI RGCGCY 1 cut(s) 734
BfuAI ACCTGC 1 cut(s) 1913
BisI GCNGC 6 cut(s) 743, 800, 1495, 1826, 2234, 2340
BlsI GCNGC 6 cut(s) 744, 801, 1496, 1827, 2235, 2341
Bme1390I CCNGG 1 cut(s) 1932
Bme18I GGWCC 2 cut(s) 48, 2036
BmeT110I CYCGRG 1 cut(s) 1199
BmgT120I GGNCC 2 cut(s) 48, 2036
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 1932
BmrI ACTGGG 1 cut(s) 2384
BmuI ACTGGG 1 cut(s) 2384
BplI GAGNNNNNCTC 2 cut(s) 2434, 2466
BpmI CTGGAG 1 cut(s) 98
Bpu10I CCTNAGC 3 cut(s) 590, 837, 977
Bpu14I TTCGAA 1 cut(s) 720
BpuEI CTTGAG 3 cut(s) 1325, 1385, 1544
Bsa29I ATCGAT 1 cut(s) 971
BsaAI YACGTR 2 cut(s) 903, 1724
BsaJI CCNNGG 3 cut(s) 449, 1930, 1931
BsaWI WCCGGW 1 cut(s) 1618
BsaXI ACNNNNNCTCC 4 cut(s) 854, 884, 1700, 1730
Bsc4I CCNNNNNNNGG 7 cut(s) 34, 35, 62, 76, 105, 244, 2357
Bse1I ACTGG 4 cut(s) 81, 1582, 2379, 2430
Bse3DI GCAATG 4 cut(s) 405, 1689, 1917, 2166
BseAI TCCGGA 1 cut(s) 1618
BseBI CCWGG 1 cut(s) 1932
BseCI ATCGAT 1 cut(s) 971
BseDI CCNNGG 3 cut(s) 449, 1930, 1931
BseLI CCNNNNNNNGG 7 cut(s) 34, 35, 62, 76, 105, 244, 2357
BseMI GCAATG 4 cut(s) 405, 1689, 1917, 2166
BseMII CTCAG 7 cut(s) 365, 434, 828, 968, 1416, 1467, 2246
BseNI ACTGG 4 cut(s) 81, 1582, 2379, 2430
BseRI GAGGAG 3 cut(s) 144, 517, 854
BseXI GCAGC 6 cut(s) 729, 786, 1481, 1837, 2220, 2326
BsgI GTGCAG 3 cut(s) 368, 1806, 1844
Bsh1236I CGCG 1 cut(s) 1108
BshFI GGCC 4 cut(s) 448, 791, 939, 1983
BshVI ATCGAT 1 cut(s) 971
BsiHKAI GWGCWC 3 cut(s) 869, 896, 1278
BsiHKCI CYCGRG 1 cut(s) 1199
BsiSI CCGG 2 cut(s) 395, 1619
BslFI GGGAC 3 cut(s) 700, 1314, 2391
BslI CCNNNNNNNGG 7 cut(s) 34, 35, 62, 76, 105, 244, 2357
BsmAI GTCTC 1 cut(s) 452
BsmBI CGTCTC 1 cut(s) 452
BsmFI GGGAC 3 cut(s) 700, 1314, 2391
BsmI GAATGC 1 cut(s) 390
BsnI GGCC 4 cut(s) 448, 791, 939, 1983
BsoBI CYCGRG 1 cut(s) 1199
Bsp119I TTCGAA 1 cut(s) 720
Bsp1286I GDGCHC 4 cut(s) 239, 869, 896, 1278
Bsp13I TCCGGA 1 cut(s) 1618
Bsp1407I TGTACA 1 cut(s) 1344
Bsp143I GATC 6 cut(s) 915, 1415, 1539, 1959, 2068, 2248
BspACI CCGC 3 cut(s) 384, 1032, 1355
BspANI GGCC 4 cut(s) 448, 791, 939, 1983
BspCNI CTCAG 7 cut(s) 366, 435, 829, 969, 1415, 1468, 2247
BspDI ATCGAT 1 cut(s) 971
BspEI TCCGGA 1 cut(s) 1618
BspFNI CGCG 1 cut(s) 1108
BspHI TCATGA 2 cut(s) 199, 1386
BspLI GGNNCC 1 cut(s) 40
BspMAI CTGCAG 2 cut(s) 747, 804
BspMI ACCTGC 1 cut(s) 1913
BspPI GGATC 1 cut(s) 1423
BspQI GCTCTTC 3 cut(s) 227, 508, 1266
BspT104I TTCGAA 1 cut(s) 720
BsrDI GCAATG 4 cut(s) 405, 1689, 1917, 2166
BsrGI TGTACA 1 cut(s) 1344
BsrI ACTGG 4 cut(s) 81, 1582, 2379, 2430
BssECI CCNNGG 3 cut(s) 449, 1930, 1931
BssMI GATC 6 cut(s) 915, 1415, 1539, 1959, 2068, 2248
BssSI CACGAG 1 cut(s) 43
Bst2BI CACGAG 1 cut(s) 43
Bst2UI CCWGG 1 cut(s) 1932
Bst4CI ACNGT 6 cut(s) 176, 707, 830, 1003, 1571, 1942
Bst6I CTCTTC 5 cut(s) 227, 508, 1077, 1266, 2120
BstAPI GCANNNNNTGC 1 cut(s) 118
BstAUI TGTACA 1 cut(s) 1344
BstBAI YACGTR 2 cut(s) 903, 1724
BstBI TTCGAA 1 cut(s) 720
BstDSI CCRYGG 1 cut(s) 449
BstENI CCTNNNNNAGG 1 cut(s) 2355
BstFNI CGCG 1 cut(s) 1108
BstH2I RGCGCY 1 cut(s) 734
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 6 cut(s) 918, 1418, 1542, 1962, 2071, 2251
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 6 cut(s) 915, 1415, 1539, 1959, 2068, 2248
BstMWI GCNNNNNNNGC 6 cut(s) 10, 118, 739, 1058, 2048, 2486
BstNI CCWGG 1 cut(s) 1932
BstNSI RCATGY 3 cut(s) 569, 2176, 2521
BstSCI CCNGG 1 cut(s) 1930
BstSFI CTRYAG 4 cut(s) 743, 800, 999, 1633
BstSNI TACGTA 1 cut(s) 903
BstUI CGCG 1 cut(s) 1108
BstV1I GCAGC 6 cut(s) 729, 786, 1481, 1837, 2220, 2326
BstX2I RGATCY 1 cut(s) 1415
BstYI RGATCY 1 cut(s) 1415
Bsu15I ATCGAT 1 cut(s) 971
BsuRI GGCC 4 cut(s) 448, 791, 939, 1983
BsuTUI ATCGAT 1 cut(s) 971
BtgI CCRYGG 1 cut(s) 449
BtgZI GCGATG 1 cut(s) 2098
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 4 cut(s) 74, 193, 1008, 2372
BveI ACCTGC 1 cut(s) 1913
CciI TCATGA 2 cut(s) 199, 1386
CfoI GCGC 1 cut(s) 733
Cfr13I GGNCC 2 cut(s) 48, 2036
ClaI ATCGAT 1 cut(s) 971
CseI GACGC 2 cut(s) 469, 942
Csp6I GTAC 3 cut(s) 826, 1345, 1721
CviQI GTAC 3 cut(s) 826, 1345, 1721
DpnI GATC 6 cut(s) 917, 1417, 1541, 1961, 2070, 2250
DpnII GATC 6 cut(s) 915, 1415, 1539, 1959, 2068, 2248
EaeI YGGCCR 2 cut(s) 789, 937
Eam1104I CTCTTC 5 cut(s) 227, 508, 1077, 1266, 2120
EarI CTCTTC 5 cut(s) 227, 508, 1077, 1266, 2120
Ecl136II GAGCTC 3 cut(s) 867, 894, 1276
Eco105I TACGTA 1 cut(s) 903
Eco24I GRGCYC 4 cut(s) 239, 869, 896, 1278
Eco32I GATATC 1 cut(s) 1752
Eco47I GGWCC 2 cut(s) 48, 2036
Eco47III AGCGCT 1 cut(s) 732
Eco53kI GAGCTC 3 cut(s) 867, 894, 1276
Eco57I CTGAAG 6 cut(s) 1074, 1290, 1715, 1890, 2003, 2192
Eco88I CYCGRG 1 cut(s) 1199
EcoICRI GAGCTC 3 cut(s) 867, 894, 1276
EcoNI CCTNNNNNAGG 1 cut(s) 2355
EcoO109I RGGNCCY 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 1930
EcoRV GATATC 1 cut(s) 1752
EcoT22I ATGCAT 2 cut(s) 1240, 1447
EcoT38I GRGCYC 4 cut(s) 239, 869, 896, 1278
Esp3I CGTCTC 1 cut(s) 452
FalI AAGNNNNNCTT 2 cut(s) 1968, 2000
FaqI GGGAC 3 cut(s) 700, 1314, 2391
FauI CCCGC 2 cut(s) 377, 1348
FauNDI CATATG 3 cut(s) 1447, 1549, 2290
FbaI TGATCA 2 cut(s) 1539, 1959
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 6 cut(s) 743, 800, 1495, 1826, 2234, 2340
FriOI GRGCYC 4 cut(s) 239, 869, 896, 1278
Fsp4HI GCNGC 6 cut(s) 743, 800, 1495, 1826, 2234, 2340
FspBI CTAG 3 cut(s) 1140, 1338, 1659
GlaI GCGC 1 cut(s) 732
GluI GCNGC 6 cut(s) 743, 800, 1495, 1826, 2234, 2340
GsuI CTGGAG 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 734
HaeIII GGCC 4 cut(s) 448, 791, 939, 1983
HapII CCGG 2 cut(s) 395, 1619
HgaI GACGC 2 cut(s) 469, 942
HhaI GCGC 1 cut(s) 733
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HindIII AAGCTT 2 cut(s) 1756, 2466
HpaII CCGG 2 cut(s) 395, 1619
HphI GGTGA 5 cut(s) 45, 164, 349, 1676, 2401
Hpy166II GTNNAC 7 cut(s) 164, 405, 703, 1320, 1562, 1948, 2151
Hpy188III TCNNGA 5 cut(s) 139, 200, 1387, 1619, 2397
Hpy8I GTNNAC 7 cut(s) 164, 405, 703, 1320, 1562, 1948, 2151
Hpy99I CGWCG 2 cut(s) 367, 958
HpyAV CCTTC 8 cut(s) 136, 487, 541, 598, 977, 1180, 2216, 2351
HpyCH4III ACNGT 6 cut(s) 176, 707, 830, 1003, 1571, 1942
HpyCH4IV ACGT 3 cut(s) 902, 1723, 1794
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 118, 739, 1058, 2048, 2486
HpySE526I ACGT 3 cut(s) 902, 1723, 1794
HspAI GCGC 1 cut(s) 731
Kpn2I TCCGGA 1 cut(s) 1618
Ksp22I TGATCA 2 cut(s) 1539, 1959
Kzo9I GATC 6 cut(s) 915, 1415, 1539, 1959, 2068, 2248
LguI GCTCTTC 3 cut(s) 227, 508, 1266
LmnI GCTCC 4 cut(s) 18, 480, 496, 997
Lsp1109I GCAGC 6 cut(s) 729, 786, 1481, 1837, 2220, 2326
MaeI CTAG 3 cut(s) 1140, 1338, 1659
MaeII ACGT 3 cut(s) 902, 1723, 1794
MaeIII GTNAC 6 cut(s) 377, 467, 781, 870, 1003, 2513
MalI GATC 6 cut(s) 917, 1417, 1541, 1961, 2070, 2250
MboI GATC 6 cut(s) 915, 1415, 1539, 1959, 2068, 2248
MfeI CAATTG 2 cut(s) 1489, 1775
MflI RGATCY 1 cut(s) 1415
MhlI GDGCHC 4 cut(s) 239, 869, 896, 1278
MlsI TGGCCA 2 cut(s) 791, 939
MluNI TGGCCA 2 cut(s) 791, 939
MlyI GAGTC 4 cut(s) 60, 628, 640, 1718
MmeI TCCRAC 6 cut(s) 393, 840, 936, 1019, 1792, 1855
Mox20I TGGCCA 2 cut(s) 791, 939
Mph1103I ATGCAT 2 cut(s) 1240, 1447
MroI TCCGGA 1 cut(s) 1618
MroXI GAANNNNTTC 3 cut(s) 1086, 1484, 2205
MscI TGGCCA 2 cut(s) 791, 939
MseI TTAA 8 cut(s) 540, 672, 945, 1011, 1884, 2094, 2243, 2439
MslI CAYNNNNRTG 2 cut(s) 177, 879
Msp20I TGGCCA 2 cut(s) 791, 939
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 2 cut(s) 395, 1619
MspR9I CCNGG 1 cut(s) 1932
MunI CAATTG 2 cut(s) 1489, 1775
Mva1269I GAATGC 1 cut(s) 390
MvaI CCWGG 1 cut(s) 1932
MvnI CGCG 1 cut(s) 1108
MwoI GCNNNNNNNGC 6 cut(s) 10, 118, 739, 1058, 2048, 2486
NdeI CATATG 3 cut(s) 1447, 1549, 2290
NdeII GATC 6 cut(s) 915, 1415, 1539, 1959, 2068, 2248
NlaIV GGNNCC 1 cut(s) 40
NmeAIII GCCGAG 1 cut(s) 1523
NmuCI GTSAC 1 cut(s) 1003
NsiI ATGCAT 2 cut(s) 1240, 1447
NspI RCATGY 3 cut(s) 569, 2176, 2521
NspV TTCGAA 1 cut(s) 720
PaeR7I CTCGAG 1 cut(s) 1199
PagI TCATGA 2 cut(s) 199, 1386
PasI CCCWGGG 1 cut(s) 1931
PciI ACATGT 1 cut(s) 2517
PciSI GCTCTTC 3 cut(s) 227, 508, 1266
PcsI WCGNNNNNNNCGW 1 cut(s) 866
PctI GAATGC 1 cut(s) 390
PdmI GAANNNNTTC 3 cut(s) 1086, 1484, 2205
PfeI GAWTC 6 cut(s) 262, 571, 595, 1021, 1815, 2298
PkrI GCNGC 6 cut(s) 744, 801, 1496, 1827, 2235, 2341
PleI GAGTC 4 cut(s) 60, 627, 639, 1717
PpsI GAGTC 4 cut(s) 60, 627, 639, 1717
Ppu21I YACGTR 2 cut(s) 903, 1724
PpuMI RGGWCCY 1 cut(s) 48
PscI ACATGT 1 cut(s) 2517
PsiI TTATAA 2 cut(s) 1800, 2262
Psp124BI GAGCTC 3 cut(s) 869, 896, 1278
Psp5II RGGWCCY 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 1930
PspGI CCWGG 1 cut(s) 1930
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 2 cut(s) 48, 2036
PspPPI RGGWCCY 1 cut(s) 48
PspXI VCTCGAGB 1 cut(s) 1199
PsrI GAACNNNNNNTAC 2 cut(s) 1621, 1653
PstI CTGCAG 2 cut(s) 747, 804
PsuI RGATCY 1 cut(s) 1415
PvuII CAGCTG 1 cut(s) 19
RsaI GTAC 3 cut(s) 827, 1346, 1722
RsaNI GTAC 3 cut(s) 826, 1345, 1721
RseI CAYNNNNRTG 2 cut(s) 177, 879
SacI GAGCTC 3 cut(s) 869, 896, 1278
SapI GCTCTTC 3 cut(s) 227, 508, 1266
SaqAI TTAA 8 cut(s) 540, 672, 945, 1011, 1884, 2094, 2243, 2439
SatI GCNGC 6 cut(s) 743, 800, 1495, 1826, 2234, 2340
Sau3AI GATC 6 cut(s) 915, 1415, 1539, 1959, 2068, 2248
Sau96I GGNCC 2 cut(s) 48, 2036
SchI GAGTC 4 cut(s) 60, 628, 640, 1718
ScrFI CCNGG 1 cut(s) 1932
SduI GDGCHC 4 cut(s) 239, 869, 896, 1278
SfcI CTRYAG 4 cut(s) 743, 800, 999, 1633
Sfr274I CTCGAG 1 cut(s) 1199
SfuI TTCGAA 1 cut(s) 720
SinI GGWCC 2 cut(s) 48, 2036
SlaI CTCGAG 1 cut(s) 1199
SmiMI CAYNNNNRTG 2 cut(s) 177, 879
SmlI CTYRAG 4 cut(s) 1199, 1304, 1364, 1523
SmoI CTYRAG 4 cut(s) 1199, 1304, 1364, 1523
SnaBI TACGTA 1 cut(s) 903
SsiI CCGC 3 cut(s) 384, 1032, 1355
SspI AATATT 2 cut(s) 963, 1120
SspMI CTAG 3 cut(s) 1140, 1338, 1659
SstI GAGCTC 3 cut(s) 869, 896, 1278
StyD4I CCNGG 1 cut(s) 1930
TaaI ACNGT 6 cut(s) 176, 707, 830, 1003, 1571, 1942
TaiI ACGT 3 cut(s) 905, 1726, 1797
TaqI TCGA 8 cut(s) 87, 362, 531, 720, 918, 971, 1090, 1200
TatI WGTACW 1 cut(s) 1344
TfiI GAWTC 6 cut(s) 262, 571, 595, 1021, 1815, 2298
Tru1I TTAA 8 cut(s) 540, 672, 945, 1011, 1884, 2094, 2243, 2439
Tru9I TTAA 8 cut(s) 540, 672, 945, 1011, 1884, 2094, 2243, 2439
TscAI CASTG 4 cut(s) 81, 193, 1008, 2379
TseFI GTSAC 1 cut(s) 1003
TseI GCWGC 6 cut(s) 742, 799, 1494, 1825, 2233, 2339
Tsp45I GTSAC 1 cut(s) 1003
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 4 cut(s) 81, 193, 1008, 2379
VpaK11BI GGWCC 2 cut(s) 48, 2036
XagI CCTNNNNNAGG 1 cut(s) 2355
XapI RAATTY 1 cut(s) 1650
XceI RCATGY 3 cut(s) 569, 2176, 2521
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XhoI CTCGAG 1 cut(s) 1199
XmiI GTMKAC 1 cut(s) 163
XmnI GAANNNNTTC 3 cut(s) 1086, 1484, 2205
XspI CTAG 3 cut(s) 1140, 1338, 1659
Zsp2I ATGCAT 2 cut(s) 1240, 1447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.