Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G23020 |
| fragaria_vesca | FvH4_4g02020 |
| malus_domestica | MD13G1203500.v1.1 MD16G1205100.v1.1 |
| prunus_persica | Prupe.1G026500_v2.0.a1 |
| pyrus_communis | pycom13g17680 |
| rosa_chinensis | RchiOBHm_Chr4g0388991 RchiOBHm_Chr4g0389031 RchiOBHm_Chr4g0389081 RchiOBHm_Chr4g0389161 RchiOBHm_Chr4g0389171 |
| rosa_laevigata | RLG00000010001 |
| rosa_multiflora | Rmu_sc0001395.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00335330 |
| rosa_rugosa | Rorug03G0321900 |
| rosa_samantha | Rh4AG026400 Rh4BG019600 Rh4BG019800 Rh4BG019900 Rh4BG020200 Rh4BG020300 Rh4CG029400 Rh4DG020000 Rh4DG020400 Rh4DG020500 Rh4DG020900 |
| rosa_wichuraiana | Rw4G001950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 663 |
| AccII | CGCG | 1 cut(s) | 461 |
| AciI | CCGC | 2 cut(s) | 218, 461 |
| AclWI | GGATC | 1 cut(s) | 286 |
| AcsI | RAATTY | 1 cut(s) | 513 |
| AcuI | CTGAAG | 2 cut(s) | 153, 578 |
| AcvI | CACGTG | 1 cut(s) | 397 |
| AfaI | GTAC | 1 cut(s) | 585 |
| AgsI | TTSAA | 3 cut(s) | 170, 352, 618 |
| AluBI | AGCT | 7 cut(s) | 26, 131, 139, 338, 440, 495, 621 |
| AluI | AGCT | 7 cut(s) | 26, 131, 139, 338, 440, 495, 621 |
| Alw21I | GWGCWC | 1 cut(s) | 141 |
| AlwI | GGATC | 1 cut(s) | 286 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 74 |
| AoxI | GGCC | 1 cut(s) | 7 |
| ApeKI | GCWGC | 1 cut(s) | 357 |
| ApoI | RAATTY | 1 cut(s) | 513 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 347 |
| AspLEI | GCGC | 1 cut(s) | 461 |
| AsuHPI | GGTGA | 1 cut(s) | 539 |
| BanII | GRGCYC | 1 cut(s) | 141 |
| BbrPI | CACGTG | 1 cut(s) | 397 |
| Bbv12I | GWGCWC | 1 cut(s) | 141 |
| BbvI | GCAGC | 1 cut(s) | 344 |
| BccI | CCATC | 2 cut(s) | 145, 664 |
| BclI | TGATCA | 1 cut(s) | 402 |
| BfaI | CTAG | 3 cut(s) | 5, 201, 522 |
| BfmI | CTRYAG | 1 cut(s) | 496 |
| BisI | GCNGC | 1 cut(s) | 358 |
| BlsI | GCNGC | 1 cut(s) | 359 |
| BmsI | GCATC | 4 cut(s) | 213, 295, 555, 603 |
| BpuEI | CTTGAG | 4 cut(s) | 83, 248, 271, 407 |
| BsaAI | YACGTR | 2 cut(s) | 397, 587 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 563, 593 |
| Bse1I | ACTGG | 1 cut(s) | 445 |
| Bse3DI | GCAATG | 1 cut(s) | 552 |
| BseGI | GGATG | 4 cut(s) | 160, 210, 228, 594 |
| BseMI | GCAATG | 1 cut(s) | 552 |
| BseMII | CTCAG | 2 cut(s) | 279, 330 |
| BseNI | ACTGG | 1 cut(s) | 445 |
| BseXI | GCAGC | 1 cut(s) | 344 |
| Bsh1236I | CGCG | 1 cut(s) | 461 |
| BshFI | GGCC | 1 cut(s) | 9 |
| BsiHKAI | GWGCWC | 1 cut(s) | 141 |
| BsnI | GGCC | 1 cut(s) | 9 |
| Bsp1286I | GDGCHC | 1 cut(s) | 141 |
| Bsp143I | GATC | 2 cut(s) | 278, 402 |
| BspACI | CCGC | 2 cut(s) | 218, 461 |
| BspANI | GGCC | 1 cut(s) | 9 |
| BspCNI | CTCAG | 2 cut(s) | 278, 331 |
| BspFNI | CGCG | 1 cut(s) | 461 |
| BspPI | GGATC | 1 cut(s) | 286 |
| BspQI | GCTCTTC | 1 cut(s) | 129 |
| BsrDI | GCAATG | 1 cut(s) | 552 |
| BsrI | ACTGG | 1 cut(s) | 445 |
| BssMI | GATC | 2 cut(s) | 278, 402 |
| Bst4CI | ACNGT | 1 cut(s) | 434 |
| Bst6I | CTCTTC | 1 cut(s) | 129 |
| BstBAI | YACGTR | 2 cut(s) | 397, 587 |
| BstC8I | GCNNGC | 2 cut(s) | 58, 442 |
| BstDEI | CTNAG | 2 cut(s) | 265, 339 |
| BstF5I | GGATG | 4 cut(s) | 160, 210, 228, 594 |
| BstFNI | CGCG | 1 cut(s) | 461 |
| BstHHI | GCGC | 1 cut(s) | 461 |
| BstKTI | GATC | 2 cut(s) | 281, 405 |
| BstMBI | GATC | 2 cut(s) | 278, 402 |
| BstSFI | CTRYAG | 1 cut(s) | 496 |
| BstUI | CGCG | 1 cut(s) | 461 |
| BstV1I | GCAGC | 1 cut(s) | 344 |
| BstX2I | RGATCY | 1 cut(s) | 278 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 452 |
| BstYI | RGATCY | 1 cut(s) | 278 |
| BsuRI | GGCC | 1 cut(s) | 9 |
| BtsCI | GGATG | 4 cut(s) | 160, 210, 228, 594 |
| Cac8I | GCNNGC | 2 cut(s) | 58, 442 |
| CaiI | CAGNNNCTG | 1 cut(s) | 74 |
| CfoI | GCGC | 1 cut(s) | 461 |
| Csp6I | GTAC | 1 cut(s) | 584 |
| CviQI | GTAC | 1 cut(s) | 584 |
| DdeI | CTNAG | 2 cut(s) | 265, 339 |
| DpnI | GATC | 2 cut(s) | 280, 404 |
| DpnII | GATC | 2 cut(s) | 278, 402 |
| Eam1104I | CTCTTC | 1 cut(s) | 129 |
| EarI | CTCTTC | 1 cut(s) | 129 |
| Ecl136II | GAGCTC | 1 cut(s) | 139 |
| Eco147I | AGGCCT | 1 cut(s) | 9 |
| Eco24I | GRGCYC | 1 cut(s) | 141 |
| Eco53kI | GAGCTC | 1 cut(s) | 139 |
| Eco57I | CTGAAG | 2 cut(s) | 153, 578 |
| Eco72I | CACGTG | 1 cut(s) | 397 |
| EcoICRI | GAGCTC | 1 cut(s) | 139 |
| EcoT22I | ATGCAT | 2 cut(s) | 103, 310 |
| EcoT38I | GRGCYC | 1 cut(s) | 141 |
| FauI | CCCGC | 1 cut(s) | 211 |
| FauNDI | CATATG | 1 cut(s) | 310 |
| FbaI | TGATCA | 1 cut(s) | 402 |
| Fnu4HI | GCNGC | 1 cut(s) | 358 |
| FokI | GGATG | 4 cut(s) | 167, 217, 235, 581 |
| FriOI | GRGCYC | 1 cut(s) | 141 |
| Fsp4HI | GCNGC | 1 cut(s) | 358 |
| FspBI | CTAG | 3 cut(s) | 5, 201, 522 |
| GlaI | GCGC | 1 cut(s) | 460 |
| GluI | GCNGC | 1 cut(s) | 358 |
| HaeIII | GGCC | 1 cut(s) | 9 |
| HhaI | GCGC | 1 cut(s) | 461 |
| Hin6I | GCGC | 1 cut(s) | 459 |
| HinP1I | GCGC | 1 cut(s) | 459 |
| HindIII | AAGCTT | 1 cut(s) | 619 |
| HinfI | GANTC | 2 cut(s) | 466, 572 |
| HphI | GGTGA | 1 cut(s) | 539 |
| Hpy166II | GTNNAC | 1 cut(s) | 183 |
| Hpy188I | TCNGA | 5 cut(s) | 148, 198, 283, 507, 558 |
| Hpy188III | TCNNGA | 2 cut(s) | 250, 482 |
| Hpy8I | GTNNAC | 1 cut(s) | 183 |
| HpyAV | CCTTC | 1 cut(s) | 43 |
| HpyCH4III | ACNGT | 1 cut(s) | 434 |
| HpyCH4IV | ACGT | 2 cut(s) | 396, 586 |
| HpyCH4V | TGCA | 7 cut(s) | 41, 101, 308, 545, 568, 594, 626 |
| HpyF3I | CTNAG | 2 cut(s) | 265, 339 |
| HpySE526I | ACGT | 2 cut(s) | 396, 586 |
| HspAI | GCGC | 1 cut(s) | 459 |
| Ksp22I | TGATCA | 1 cut(s) | 402 |
| Kzo9I | GATC | 2 cut(s) | 278, 402 |
| LguI | GCTCTTC | 1 cut(s) | 129 |
| LpnPI | CCDG | 9 cut(s) | 23, 81, 87, 252, 458, 472, 495, 554, 561 |
| Lsp1109I | GCAGC | 1 cut(s) | 344 |
| LweI | GCATC | 4 cut(s) | 213, 295, 555, 603 |
| MaeI | CTAG | 3 cut(s) | 5, 201, 522 |
| MaeII | ACGT | 2 cut(s) | 396, 586 |
| MalI | GATC | 2 cut(s) | 280, 404 |
| MboI | GATC | 2 cut(s) | 278, 402 |
| MboII | GAAGA | 4 cut(s) | 146, 382, 571, 574 |
| MfeI | CAATTG | 2 cut(s) | 352, 638 |
| MflI | RGATCY | 1 cut(s) | 278 |
| MhlI | GDGCHC | 1 cut(s) | 141 |
| MluCI | AATT | 6 cut(s) | 171, 352, 477, 513, 629, 638 |
| MlyI | GAGTC | 2 cut(s) | 475, 581 |
| MnlI | CCTC | 2 cut(s) | 46, 646 |
| Mph1103I | ATGCAT | 2 cut(s) | 103, 310 |
| MroXI | GAANNNNTTC | 1 cut(s) | 347 |
| MunI | CAATTG | 2 cut(s) | 352, 638 |
| MvnI | CGCG | 1 cut(s) | 461 |
| NdeI | CATATG | 1 cut(s) | 310 |
| NdeII | GATC | 2 cut(s) | 278, 402 |
| NmeAIII | GCCGAG | 1 cut(s) | 386 |
| NsiI | ATGCAT | 2 cut(s) | 103, 310 |
| PceI | AGGCCT | 1 cut(s) | 9 |
| PciSI | GCTCTTC | 1 cut(s) | 129 |
| PdmI | GAANNNNTTC | 1 cut(s) | 347 |
| PkrI | GCNGC | 1 cut(s) | 359 |
| PleI | GAGTC | 2 cut(s) | 474, 580 |
| PmaCI | CACGTG | 1 cut(s) | 397 |
| PmlI | CACGTG | 1 cut(s) | 397 |
| PpsI | GAGTC | 2 cut(s) | 474, 580 |
| Ppu21I | YACGTR | 2 cut(s) | 397, 587 |
| PsiI | TTATAA | 1 cut(s) | 663 |
| Psp124BI | GAGCTC | 1 cut(s) | 141 |
| PspCI | CACGTG | 1 cut(s) | 397 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 484, 516 |
| PstNI | CAGNNNCTG | 1 cut(s) | 74 |
| PsuI | RGATCY | 1 cut(s) | 278 |
| RsaI | GTAC | 1 cut(s) | 585 |
| RsaNI | GTAC | 1 cut(s) | 584 |
| SacI | GAGCTC | 1 cut(s) | 141 |
| SapI | GCTCTTC | 1 cut(s) | 129 |
| SatI | GCNGC | 1 cut(s) | 358 |
| Sau3AI | GATC | 2 cut(s) | 278, 402 |
| SchI | GAGTC | 2 cut(s) | 475, 581 |
| SduI | GDGCHC | 1 cut(s) | 141 |
| SfaNI | GCATC | 4 cut(s) | 213, 295, 555, 603 |
| SfcI | CTRYAG | 1 cut(s) | 496 |
| SmlI | CTYRAG | 4 cut(s) | 62, 227, 250, 386 |
| SmoI | CTYRAG | 4 cut(s) | 62, 227, 250, 386 |
| Sse9I | AATT | 6 cut(s) | 171, 352, 477, 513, 629, 638 |
| SseBI | AGGCCT | 1 cut(s) | 9 |
| SsiI | CCGC | 2 cut(s) | 218, 461 |
| SspMI | CTAG | 3 cut(s) | 5, 201, 522 |
| SstI | GAGCTC | 1 cut(s) | 141 |
| StuI | AGGCCT | 1 cut(s) | 9 |
| TaaI | ACNGT | 1 cut(s) | 434 |
| TaiI | ACGT | 2 cut(s) | 399, 589 |
| TasI | AATT | 6 cut(s) | 171, 352, 477, 513, 629, 638 |
| TseI | GCWGC | 1 cut(s) | 357 |
| TspDTI | ATGAA | 3 cut(s) | 62, 171, 248 |
| XapI | RAATTY | 1 cut(s) | 513 |
| XmnI | GAANNNNTTC | 1 cut(s) | 347 |
| XspI | CTAG | 3 cut(s) | 5, 201, 522 |
| Zsp2I | ATGCAT | 2 cut(s) | 103, 310 |