RchiOBHm_Chr4g0389031

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
4191747 .. 4193177
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36220

Sequence Viewer

Length: 1431 bp
ATGTGGTTTAAGAAGAAGAGGTGTCATGAGTTGCATGTGATTCACTATAATATAGTGCTTAGGATTCTTGGGAAGGCGAAGAAGTGGAGTCATCTAAGGAGTCTTTGGGATGAGATGAATGTGGAAAGAATGGCACCCATTAACTCAACTTATGGAACTTTGATTGATGTTTACAGTAAAGGTGGGTTCGAAAAGGAAGCGCTCATTTGGCTGCAGAGGATGACCAAGCAAGGAATGAAACCTGATGAGGTTACTATGGCCATTGTGCTGCAGTTGTATAAGAAAGCAGGGGAGTACCGAAAAGCTGAGGAGTTTTTTGAGAAATGGTCGGAGAGCTCCTTGCATTCTCATGGTTCTTTGAGCTTGCATACGTATAACACATTGATCGACACGCGTGGAAAAGCTGGCCAGCTTAAAGACGCGTCGGAAATGTTTGCATCGATGCTGAGGGAAGGGATTGCTCCAACTACAGTGACTTTCAATACAATGATTCACATTTGCGGTAATCATGGTCAGCTTGCAGAAGTTGCTTCACTTATGCAGAAGATGGAAGAGGTTCGATGCCCACCAGACACGAGAACATATAATATTCTGATTTCCCTCCATGCTAGGCATGATAATATAGACACAGCTACAAACTACTTTGCAAAGATGAAGGAGGCTTGCCTTGAGCCAGACCCTGTGAGTTATCGCACCCTTTTGTATGCATACTCTGTAAGGCACATGGTTAGCAAAGCTGAAGAGCTCATATCAGAGATGGATGAAAGGGGGCTTGAAATTGATGAGTTCACTCATTCGGCTCTGACTAGGATGTATATAGAAGCGGGGATGCTTGAGAAGTCTTGGGTTTGGTTCTTGAGATTTCATCTCTCAGGGAAAATGGGATCTGATTGCTATTCTGCCAACATTGATGCATATGGAGAGCGTGGGCATATTTTGGAAGCTGAGAAAGTTTTCAATTGCTGCCGAGAAGTGAAGAAGTTGAGTGTCCTTGAGTTCAACGTGATGATCAAATCGTATGTGGTTGGTAAACATTACAGTAGAGCTTGCCAGTTGTTTGGTAGCGCGGAGAGTCATAGTGTGATTCCAGACAGTTGTAGCTATAGTTCTCTGATACAAATTTTGGCTAGTGGTGATATGCCACATACTGCAATGCCTTATCTGAAGAAGATGCAGGAGTCAGGGTTGGTACGTGATTGCATCCCCTATTGTGCTGTGATTTCAAGCTTTGCAAAATTAGGTCAATTGGAAAGGGCAGAGGAAGTTTATAAACAGATGGTTCAATTCAATGTGCAGCCTGATGTAATTGTCTTTGGGGTGTTGATAAATGCTTTTGCTGAAGTTGGAAGAAAGATAACTTTTATTAATAAGAAAAATCAAATTGCGTTGTTTATATGGCAATTATATATCGCCTTTATATGTCCTCTGTGA

Protein Analysis

476

Amino Acids

54.57

Weight (kDa)

7.91

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 120 - 169 1.4e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 123 - 167 1.2e-11 PPR repeat family
PPR_long PF17177 129 - 281 6.2e-12 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 155 - 201 2.4e-12 PPR repeat family
PPR_2 PF13041 190 - 237 9.5e-09 PPR repeat family
PPR_2 PF13041 225 - 270 5.3e-07 PPR repeat family
TPR_24 PF23276 326 - 426 8.3e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 388 - 445 4.3e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 403 - 446 1.4e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1269
AccB1I GGYRCC 1 cut(s) 133
AccII CGCG 3 cut(s) 394, 422, 1067
AciI CCGC 3 cut(s) 501, 824, 1067
AclWI GGATC 1 cut(s) 892
AcoI YGGCCR 2 cut(s) 258, 406
AcsI RAATTY 1 cut(s) 1119
AcuI CTGAAG 3 cut(s) 759, 1184, 1359
AfaI GTAC 2 cut(s) 296, 1191
AfeI AGCGCT 1 cut(s) 201
AflIII ACRYGT 2 cut(s) 392, 420
AgsI TTSAA 7 cut(s) 481, 776, 958, 1000, 1224, 1283, 1288
Alw21I GWGCWC 2 cut(s) 338, 747
AlwI GGATC 1 cut(s) 892
AlwNI CAGNNNCTG 1 cut(s) 680
Aor51HI AGCGCT 1 cut(s) 201
AoxI GGCC 2 cut(s) 258, 406
ApeKI GCWGC 4 cut(s) 211, 268, 963, 1294
ApoI RAATTY 1 cut(s) 1119
AseI ATTAAT 1 cut(s) 1365
Asp700I GAANNNNTTC 2 cut(s) 555, 953
AspLEI GCGC 2 cut(s) 202, 1067
AsuHPI GGTGA 1 cut(s) 1145
AsuII TTCGAA 1 cut(s) 189
BalI TGGCCA 2 cut(s) 260, 408
BanI GGYRCC 1 cut(s) 133
BanII GRGCYC 2 cut(s) 338, 747
BauI CACGAG 1 cut(s) 574
Bbv12I GWGCWC 2 cut(s) 338, 747
BbvCI CCTCAGC 2 cut(s) 306, 446
BbvI GCAGC 4 cut(s) 198, 255, 950, 1306
BccI CCATC 3 cut(s) 541, 751, 1270
BclI TGATCA 1 cut(s) 1008
BfaI CTAG 3 cut(s) 609, 807, 1128
BfmI CTRYAG 4 cut(s) 212, 269, 468, 1102
BfoI RGCGCY 1 cut(s) 203
BisI GCNGC 4 cut(s) 212, 269, 964, 1295
BlsI GCNGC 4 cut(s) 213, 270, 965, 1296
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 7 cut(s) 432, 446, 551, 819, 901, 1161, 1209
Bpu10I CCTNAGC 3 cut(s) 59, 306, 446
Bpu14I TTCGAA 1 cut(s) 189
BpuEI CTTGAG 4 cut(s) 689, 854, 877, 1013
Bsa29I ATCGAT 1 cut(s) 440
BsaAI YACGTR 2 cut(s) 372, 1193
BsaXI ACNNNNNCTCC 2 cut(s) 1169, 1199
Bse1I ACTGG 1 cut(s) 1051
Bse3DI GCAATG 1 cut(s) 1158
BseCI ATCGAT 1 cut(s) 440
BseGI GGATG 6 cut(s) 115, 225, 766, 816, 834, 1200
BseMI GCAATG 1 cut(s) 1158
BseMII CTCAG 4 cut(s) 297, 437, 885, 936
BseNI ACTGG 1 cut(s) 1051
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 4 cut(s) 198, 255, 950, 1306
BsgI GTGCAG 1 cut(s) 1313
Bsh1236I CGCG 3 cut(s) 394, 422, 1067
BshFI GGCC 2 cut(s) 260, 408
BshNI GGYRCC 1 cut(s) 133
BshVI ATCGAT 1 cut(s) 440
BsiHKAI GWGCWC 2 cut(s) 338, 747
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 2 cut(s) 260, 408
Bsp119I TTCGAA 1 cut(s) 189
Bsp1286I GDGCHC 2 cut(s) 338, 747
Bsp143I GATC 3 cut(s) 384, 884, 1008
BspACI CCGC 3 cut(s) 501, 824, 1067
BspANI GGCC 2 cut(s) 260, 408
BspCNI CTCAG 4 cut(s) 298, 438, 884, 937
BspDI ATCGAT 1 cut(s) 440
BspFNI CGCG 3 cut(s) 394, 422, 1067
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 135
BspMAI CTGCAG 2 cut(s) 216, 273
BspPI GGATC 1 cut(s) 892
BspQI GCTCTTC 1 cut(s) 735
BspT104I TTCGAA 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 1158
BsrI ACTGG 1 cut(s) 1051
BssMI GATC 3 cut(s) 384, 884, 1008
BssSI CACGAG 1 cut(s) 574
Bst2BI CACGAG 1 cut(s) 574
Bst4CI ACNGT 4 cut(s) 176, 472, 1040, 1094
Bst6I CTCTTC 3 cut(s) 11, 546, 735
BstAPI GCANNNNNTGC 1 cut(s) 527
BstBAI YACGTR 2 cut(s) 372, 1193
BstBI TTCGAA 1 cut(s) 189
BstC8I GCNNGC 6 cut(s) 365, 406, 410, 519, 664, 1048
BstDEI CTNAG 6 cut(s) 59, 95, 306, 446, 871, 945
BstF5I GGATG 6 cut(s) 115, 225, 766, 816, 834, 1200
BstFNI CGCG 3 cut(s) 394, 422, 1067
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 2 cut(s) 202, 1067
BstKTI GATC 3 cut(s) 387, 887, 1011
BstMBI GATC 3 cut(s) 384, 884, 1008
BstMWI GCNNNNNNNGC 2 cut(s) 208, 527
BstNSI RCATGY 1 cut(s) 38
BstSFI CTRYAG 4 cut(s) 212, 269, 468, 1102
BstSNI TACGTA 1 cut(s) 372
BstUI CGCG 3 cut(s) 394, 422, 1067
BstV1I GCAGC 4 cut(s) 198, 255, 950, 1306
BstX2I RGATCY 1 cut(s) 884
BstXI CCANNNNNNTGG 1 cut(s) 1058
BstYI RGATCY 1 cut(s) 884
Bsu15I ATCGAT 1 cut(s) 440
BsuRI GGCC 2 cut(s) 260, 408
BsuTUI ATCGAT 1 cut(s) 440
BtsCI GGATG 6 cut(s) 115, 225, 766, 816, 834, 1200
BtsIMutI CAGTG 1 cut(s) 477
Cac8I GCNNGC 6 cut(s) 365, 406, 410, 519, 664, 1048
CaiI CAGNNNCTG 1 cut(s) 680
CciI TCATGA 1 cut(s) 25
CfoI GCGC 2 cut(s) 202, 1067
ClaI ATCGAT 1 cut(s) 440
CseI GACGC 2 cut(s) 411, 428
Csp6I GTAC 2 cut(s) 295, 1190
CviAII CATG 7 cut(s) 26, 35, 350, 509, 605, 614, 724
CviQI GTAC 2 cut(s) 295, 1190
DdeI CTNAG 6 cut(s) 59, 95, 306, 446, 871, 945
DpnI GATC 3 cut(s) 386, 886, 1010
DpnII GATC 3 cut(s) 384, 884, 1008
EaeI YGGCCR 2 cut(s) 258, 406
Eam1104I CTCTTC 3 cut(s) 11, 546, 735
EarI CTCTTC 3 cut(s) 11, 546, 735
Ecl136II GAGCTC 2 cut(s) 336, 745
Eco105I TACGTA 1 cut(s) 372
Eco24I GRGCYC 2 cut(s) 338, 747
Eco47III AGCGCT 1 cut(s) 201
Eco53kI GAGCTC 2 cut(s) 336, 745
Eco57I CTGAAG 3 cut(s) 759, 1184, 1359
EcoICRI GAGCTC 2 cut(s) 336, 745
EcoT22I ATGCAT 2 cut(s) 709, 916
EcoT38I GRGCYC 2 cut(s) 338, 747
FaeI CATG 7 cut(s) 29, 38, 353, 512, 608, 617, 727
FatI CATG 7 cut(s) 25, 34, 349, 508, 604, 613, 723
FauI CCCGC 1 cut(s) 817
FauNDI CATATG 1 cut(s) 916
FbaI TGATCA 1 cut(s) 1008
Fnu4HI GCNGC 4 cut(s) 212, 269, 964, 1295
FokI GGATG 6 cut(s) 122, 232, 773, 823, 841, 1187
FriOI GRGCYC 2 cut(s) 338, 747
Fsp4HI GCNGC 4 cut(s) 212, 269, 964, 1295
FspBI CTAG 3 cut(s) 609, 807, 1128
GlaI GCGC 2 cut(s) 201, 1066
GluI GCNGC 4 cut(s) 212, 269, 964, 1295
HaeII RGCGCY 1 cut(s) 203
HaeIII GGCC 2 cut(s) 260, 408
HgaI GACGC 2 cut(s) 411, 428
HhaI GCGC 2 cut(s) 202, 1067
Hin1II CATG 7 cut(s) 29, 38, 353, 512, 608, 617, 727
Hin6I GCGC 2 cut(s) 200, 1065
HinP1I GCGC 2 cut(s) 200, 1065
HindIII AAGCTT 1 cut(s) 1225
HinfI GANTC 8 cut(s) 40, 64, 88, 100, 490, 1072, 1084, 1178
HphI GGTGA 1 cut(s) 1145
Hpy166II GTNNAC 3 cut(s) 172, 789, 1031
Hpy188I TCNGA 8 cut(s) 331, 427, 594, 754, 804, 889, 1113, 1164
Hpy188III TCNNGA 3 cut(s) 26, 856, 1088
Hpy8I GTNNAC 3 cut(s) 172, 789, 1031
Hpy99I CGWCG 1 cut(s) 427
HpyAV CCTTC 3 cut(s) 67, 446, 649
HpyCH4III ACNGT 4 cut(s) 176, 472, 1040, 1094
HpyCH4IV ACGT 3 cut(s) 371, 1002, 1192
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 527
HpyF3I CTNAG 6 cut(s) 59, 95, 306, 446, 871, 945
HpySE526I ACGT 3 cut(s) 371, 1002, 1192
Hsp92II CATG 7 cut(s) 29, 38, 353, 512, 608, 617, 727
HspAI GCGC 2 cut(s) 200, 1065
Ksp22I TGATCA 1 cut(s) 1008
Kzo9I GATC 3 cut(s) 384, 884, 1008
LguI GCTCTTC 1 cut(s) 735
LmnI GCTCC 2 cut(s) 341, 466
Lsp1109I GCAGC 4 cut(s) 198, 255, 950, 1306
LweI GCATC 7 cut(s) 432, 446, 551, 819, 901, 1161, 1209
MaeI CTAG 3 cut(s) 609, 807, 1128
MaeII ACGT 3 cut(s) 371, 1002, 1192
MaeIII GTNAC 2 cut(s) 250, 472
MalI GATC 3 cut(s) 386, 886, 1010
MboI GATC 3 cut(s) 384, 884, 1008
MfeI CAATTG 2 cut(s) 958, 1244
MflI RGATCY 1 cut(s) 884
MhlI GDGCHC 2 cut(s) 338, 747
MlsI TGGCCA 2 cut(s) 260, 408
MluCI AATT 9 cut(s) 777, 958, 1119, 1235, 1244, 1283, 1305, 1380, 1400
MluI ACGCGT 2 cut(s) 392, 420
MluNI TGGCCA 2 cut(s) 260, 408
MlyI GAGTC 4 cut(s) 97, 109, 1081, 1187
MmeI TCCRAC 4 cut(s) 309, 405, 488, 1324
MnlI CCTC 9 cut(s) 12, 210, 241, 301, 441, 547, 611, 652, 1252
Mox20I TGGCCA 2 cut(s) 260, 408
Mph1103I ATGCAT 2 cut(s) 709, 916
MroXI GAANNNNTTC 2 cut(s) 555, 953
MscI TGGCCA 2 cut(s) 260, 408
MseI TTAA 4 cut(s) 9, 141, 414, 1365
MslI CAYNNNNRTG 1 cut(s) 348
Msp20I TGGCCA 2 cut(s) 260, 408
MunI CAATTG 2 cut(s) 958, 1244
Mva1269I GAATGC 1 cut(s) 343
MvnI CGCG 3 cut(s) 394, 422, 1067
MwoI GCNNNNNNNGC 2 cut(s) 208, 527
NdeI CATATG 1 cut(s) 916
NdeII GATC 3 cut(s) 384, 884, 1008
NlaIII CATG 7 cut(s) 29, 38, 353, 512, 608, 617, 727
NlaIV GGNNCC 1 cut(s) 135
NmeAIII GCCGAG 1 cut(s) 992
NmuCI GTSAC 1 cut(s) 472
NsiI ATGCAT 2 cut(s) 709, 916
NspI RCATGY 1 cut(s) 38
NspV TTCGAA 1 cut(s) 189
PagI TCATGA 1 cut(s) 25
PciSI GCTCTTC 1 cut(s) 735
PctI GAATGC 1 cut(s) 343
PdmI GAANNNNTTC 2 cut(s) 555, 953
PfeI GAWTC 4 cut(s) 40, 64, 490, 1084
PkrI GCNGC 4 cut(s) 213, 270, 965, 1296
PleI GAGTC 4 cut(s) 96, 108, 1080, 1186
PpsI GAGTC 4 cut(s) 96, 108, 1080, 1186
Ppu21I YACGTR 2 cut(s) 372, 1193
PshBI ATTAAT 1 cut(s) 1365
PsiI TTATAA 1 cut(s) 1269
Psp124BI GAGCTC 2 cut(s) 338, 747
PspN4I GGNNCC 1 cut(s) 135
PsrI GAACNNNNNNTAC 2 cut(s) 1090, 1122
PstI CTGCAG 2 cut(s) 216, 273
PstNI CAGNNNCTG 1 cut(s) 680
PsuI RGATCY 1 cut(s) 884
RsaI GTAC 2 cut(s) 296, 1191
RsaNI GTAC 2 cut(s) 295, 1190
RseI CAYNNNNRTG 1 cut(s) 348
SacI GAGCTC 2 cut(s) 338, 747
SapI GCTCTTC 1 cut(s) 735
SaqAI TTAA 4 cut(s) 9, 141, 414, 1365
SatI GCNGC 4 cut(s) 212, 269, 964, 1295
Sau3AI GATC 3 cut(s) 384, 884, 1008
SchI GAGTC 4 cut(s) 97, 109, 1081, 1187
SduI GDGCHC 2 cut(s) 338, 747
SfaNI GCATC 7 cut(s) 432, 446, 551, 819, 901, 1161, 1209
SfcI CTRYAG 4 cut(s) 212, 269, 468, 1102
SfuI TTCGAA 1 cut(s) 189
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 4 cut(s) 668, 833, 856, 992
SmoI CTYRAG 4 cut(s) 668, 833, 856, 992
SnaBI TACGTA 1 cut(s) 372
Sse9I AATT 9 cut(s) 777, 958, 1119, 1235, 1244, 1283, 1305, 1380, 1400
SsiI CCGC 3 cut(s) 501, 824, 1067
SspI AATATT 1 cut(s) 589
SspMI CTAG 3 cut(s) 609, 807, 1128
SstI GAGCTC 2 cut(s) 338, 747
TaaI ACNGT 4 cut(s) 176, 472, 1040, 1094
TaiI ACGT 3 cut(s) 374, 1005, 1195
TaqI TCGA 4 cut(s) 189, 387, 440, 559
TasI AATT 9 cut(s) 777, 958, 1119, 1235, 1244, 1283, 1305, 1380, 1400
TfiI GAWTC 4 cut(s) 40, 64, 490, 1084
Tru1I TTAA 4 cut(s) 9, 141, 414, 1365
Tru9I TTAA 4 cut(s) 9, 141, 414, 1365
TscAI CASTG 1 cut(s) 477
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 4 cut(s) 211, 268, 963, 1294
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 5 cut(s) 131, 251, 668, 777, 854
TspRI CASTG 1 cut(s) 477
VspI ATTAAT 1 cut(s) 1365
XapI RAATTY 1 cut(s) 1119
XceI RCATGY 1 cut(s) 38
XmnI GAANNNNTTC 2 cut(s) 555, 953
XspI CTAG 3 cut(s) 609, 807, 1128
Zsp2I ATGCAT 2 cut(s) 709, 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.