Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006344

Physical Location & Seq

Genomic Coordinates Reverse (-)

4255522 .. 4257079

Gene Structure 1558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36224

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGAAGTGGAGTCATCTAAGGAGTCTTTGGGATGAGATGAATGTGGAAAGAATAGCACCTATTAACTCAACTTATGGGACTTTGATTGATGTTTATAGTAAAGGTGGGTTTGAAAAGGAAGCGCTTATATGGCTGCAGAGGATGACCAAGCAAGGAATGAAACCTGATGAGGTTACTATGGCCATTGTGCTGCATTTGTACAAGAAAGCAGGGGAGTACCGAAAGGCTGAGGAGTTTTTCGAGAAATGGTCAGAGAGCTCGTTGCATTGTCATGGTTCTTTGAGCTCGCATACGTATAACACATTGATTGACACGCGTGGAAAGGCTGGCCAGCTTAAAGAAGCGTCGGAAATATTTGCATCGATGCTGAGGGAAGGGATTGCTCCAACTACGGTGACTTTTAATACAATGATTCACATTTGCAGTAATCATGGTCAGCTTGCAGAAGTTGCTTCGCTTATGCAGAAGATGGAAGAGGTTCGATGCCCACCAGACACGAGAACATATAATATTCTGATTTCCCTCCATGCTAGGCATGATAATATAGACACAGCTATAAACTACTTCGCAAAGATGAAGGTGGCTTGCCTTGAACCAGACCCTGTGAGTTATCGCACCCTTTTGTATGCATACTCTGTAAGGCACATGGTTAGCAAAGCTGAAGAGCTCATATCAAAGATGGATGAAAGGGGGCTTGAGATTGATGAGTTCACTCATTTGGCTCTGACTAGGATGTATATAGAAGCGGGGATGCTTGAGAAGTCTTGGGTTTGGTTCTTGAGATTTCATCTCTCAGGGAAAATGGGATCTGATTGCTATTCTGCCAACATTGATGCATATGGAGAGCGTGGGCATATTTTGGAAGCTGAGAAAGTTTTCAATTGCTGCCGAGAAGTGAAGAAGTTGAGTGTCCTTGAGTTCAACGTGAAGATCAAAGCATATGGGGTTGGTAAACATTACAGTAGAGCTTGCCAGTTGTTTGATAGCATGGAGAATCATGATGTAATTCCGGACAGGTGTAGCTATAGTTCTCTGATACAAATTTTGGCTAGTGGTGATATGCCACATACTGAAATGCCTTATCTAAAGAAGATGCAGGATTCAGGGTTGGTACGTGATTGCATCCCCTATTGTGCTGTGATATCAAGCTTTGCAAAATTAGGTCAATTGGAAAGGGCAGAGGATGTTTATAAACAGATGGTTGGATTCAATGTGCAGCCTGATGTAATTGTCTTTGGGGTGTTGATAAATGCTTTTGCTGAAGTTGGACATGTTAAAGAGGCTCTCGGTTATGCTGATGCAATGAAAAAGGCCGATTTCCCCGGGAACACAGTTGTTTACAATACCTTGATCAAGCTTTATACAAAAGTAGGCCTTTTGAAAGAAGCAGAAGAAACATACAAACTTCTTGAATCATCAGAGGATGGTCCAGCTATATATGCATCAAATTGTATGATTGATCTTTATAGTGAGCGATGTATGGTTAAACCAGCAGAAGAACTGTTTGACAGGTTGAAGAGAAGGGGCATGCAAATGAGTTTACATTTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

517

Amino Acids

58.94

Weight (kDa)

6.24

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	92 - 191	1.8e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	96 - 139	2.2e-11	PPR repeat family
PPR_3	PF13812	97 - 143	8.2e-09	Pentatricopeptide repeat domain
PPR_long	PF17177	100 - 255	2.1e-13	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	129 - 175	1.6e-12	PPR repeat family
PPR_3	PF13812	132 - 175	5.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	164 - 211	1.2e-08	PPR repeat family
TPR_24	PF23276	300 - 400	2.5e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	308 - 472	5.9e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	377 - 420	8.2e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23020
fragaria_vesca	FvH4_4g02020
malus_domestica	MD13G1203500.v1.1 MD16G1205100.v1.1
prunus_persica	Prupe.1G026500_v2.0.a1
pyrus_communis	pycom13g17680
rosa_chinensis	RchiOBHm_Chr4g0388991 RchiOBHm_Chr4g0389031 RchiOBHm_Chr4g0389081 RchiOBHm_Chr4g0389161 RchiOBHm_Chr4g0389171
rosa_laevigata	RLG00000010001
rosa_multiflora	Rmu_sc0001395.1_g000006
rosa_roxburghii	Rroxscaffold_5G00335330
rosa_rugosa	Rorug03G0321900
rosa_samantha	Rh4AG026400 Rh4BG019600 Rh4BG019800 Rh4BG019900 Rh4BG020200 Rh4BG020300 Rh4CG029400 Rh4DG020000 Rh4DG020400 Rh4DG020500 Rh4DG020900
rosa_wichuraiana	Rw4G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1191
AccII	CGCG	1 cut(s)	316
AccIII	TCCGGA	1 cut(s)	1009
AciI	CCGC	1 cut(s)	746
AclWI	GGATC	1 cut(s)	814
AcoI	YGGCCR	2 cut(s)	180, 328
AcsI	RAATTY	1 cut(s)	1041
AcuI	CTGAAG	2 cut(s)	681, 1281
AfaI	GTAC	3 cut(s)	200, 218, 1113
AfeI	AGCGCT	1 cut(s)	123
AflIII	ACRYGT	2 cut(s)	314, 1270
AgsI	TTSAA	8 cut(s)	113, 593, 880, 922, 1210, 1381, 1412, 1516
Alw21I	GWGCWC	3 cut(s)	260, 287, 669
AlwI	GGATC	1 cut(s)	814
AlwNI	CAGNNNCTG	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	1322
Aor13HI	TCCGGA	1 cut(s)	1009
Aor51HI	AGCGCT	1 cut(s)	123
AoxI	GGCC	4 cut(s)	180, 328, 1311, 1372
ApeKI	GCWGC	4 cut(s)	133, 190, 885, 1216
ApoI	RAATTY	1 cut(s)	1041
Asp700I	GAANNNNTTC	2 cut(s)	477, 875
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	1427
AsuC2I	CCSGG	2 cut(s)	1323, 1324
AsuHPI	GGTGA	2 cut(s)	406, 1067
AvaI	CYCGRG	1 cut(s)	1322
AvaII	GGWCC	1 cut(s)	1427
BalI	TGGCCA	2 cut(s)	182, 330
BanII	GRGCYC	3 cut(s)	260, 287, 669
BauI	CACGAG	1 cut(s)	496
Bbv12I	GWGCWC	3 cut(s)	260, 287, 669
BbvCI	CCTCAGC	2 cut(s)	228, 368
BbvI	GCAGC	4 cut(s)	120, 177, 872, 1228
BccI	CCATC	4 cut(s)	463, 673, 1192, 1418
BclI	TGATCA	1 cut(s)	1350
BcnI	CCSGG	2 cut(s)	1323, 1324
BfaI	CTAG	3 cut(s)	531, 729, 1050
BfmI	CTRYAG	2 cut(s)	134, 1024
BfoI	RGCGCY	1 cut(s)	125
BisI	GCNGC	4 cut(s)	134, 191, 886, 1217
BlsI	GCNGC	4 cut(s)	135, 192, 887, 1218
Bme1390I	CCNGG	2 cut(s)	1323, 1324
Bme18I	GGWCC	1 cut(s)	1427
BmeT110I	CYCGRG	1 cut(s)	1322
BmgT120I	GGNCC	1 cut(s)	1427
BmrFI	CCNGG	2 cut(s)	1323, 1324
BmsI	GCATC	9 cut(s)	354, 368, 473, 741, 823, 1083, 1131, 1288, 1451
Bpu10I	CCTNAGC	2 cut(s)	228, 368
BpuEI	CTTGAG	4 cut(s)	716, 776, 799, 935
BpuMI	CCSGG	2 cut(s)	1323, 1324
Bsa29I	ATCGAT	1 cut(s)	362
BsaAI	YACGTR	2 cut(s)	294, 1115
BsaJI	CCNNGG	2 cut(s)	1321, 1322
BsaWI	WCCGGW	1 cut(s)	1009
Bse1I	ACTGG	1 cut(s)	973
Bse3DI	GCAATG	1 cut(s)	1308
BseAI	TCCGGA	1 cut(s)	1009
BseCI	ATCGAT	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	1321, 1322
BseGI	GGATG	8 cut(s)	37, 147, 688, 738, 756, 1122, 1189, 1429
BseMI	GCAATG	1 cut(s)	1308
BseMII	CTCAG	4 cut(s)	219, 359, 807, 858
BseNI	ACTGG	1 cut(s)	973
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	4 cut(s)	120, 177, 872, 1228
BsgI	GTGCAG	1 cut(s)	1235
Bsh1236I	CGCG	1 cut(s)	316
BshFI	GGCC	4 cut(s)	182, 330, 1313, 1374
BshVI	ATCGAT	1 cut(s)	362
BsiHKAI	GWGCWC	3 cut(s)	260, 287, 669
BsiHKCI	CYCGRG	1 cut(s)	1322
BsiSI	CCGG	2 cut(s)	1010, 1323
BslFI	GGGAC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	4 cut(s)	182, 330, 1313, 1374
BsoBI	CYCGRG	1 cut(s)	1322
Bsp1286I	GDGCHC	3 cut(s)	260, 287, 669
Bsp13I	TCCGGA	1 cut(s)	1009
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	4 cut(s)	806, 930, 1350, 1459
BspACI	CCGC	1 cut(s)	746
BspANI	GGCC	4 cut(s)	182, 330, 1313, 1374
BspCNI	CTCAG	4 cut(s)	220, 360, 806, 859
BspDI	ATCGAT	1 cut(s)	362
BspEI	TCCGGA	1 cut(s)	1009
BspFNI	CGCG	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	997
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	1 cut(s)	814
BspQI	GCTCTTC	1 cut(s)	657
BsrDI	GCAATG	1 cut(s)	1308
BsrGI	TGTACA	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	973
BssECI	CCNNGG	2 cut(s)	1321, 1322
BssMI	GATC	4 cut(s)	806, 930, 1350, 1459
BssSI	CACGAG	1 cut(s)	496
Bst2BI	CACGAG	1 cut(s)	496
Bst4CI	ACNGT	4 cut(s)	394, 962, 1333, 1503
Bst6I	CTCTTC	3 cut(s)	468, 657, 1511
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstAUI	TGTACA	1 cut(s)	198
BstBAI	YACGTR	2 cut(s)	294, 1115
BstC8I	GCNNGC	7 cut(s)	287, 328, 332, 441, 586, 970, 1529
BstDEI	CTNAG	5 cut(s)	17, 228, 368, 793, 867
BstF5I	GGATG	8 cut(s)	37, 147, 688, 738, 756, 1122, 1189, 1429
BstFNI	CGCG	1 cut(s)	316
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	4 cut(s)	809, 933, 1353, 1462
BstMBI	GATC	4 cut(s)	806, 930, 1350, 1459
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 449, 1439
BstNSI	RCATGY	2 cut(s)	1274, 1531
BstSCI	CCNGG	2 cut(s)	1321, 1322
BstSFI	CTRYAG	2 cut(s)	134, 1024
BstSNI	TACGTA	1 cut(s)	294
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	4 cut(s)	120, 177, 872, 1228
BstX2I	RGATCY	1 cut(s)	806
BstYI	RGATCY	1 cut(s)	806
Bsu15I	ATCGAT	1 cut(s)	362
BsuRI	GGCC	4 cut(s)	182, 330, 1313, 1374
BsuTUI	ATCGAT	1 cut(s)	362
BtgZI	GCGATG	1 cut(s)	1489
BtsCI	GGATG	8 cut(s)	37, 147, 688, 738, 756, 1122, 1189, 1429
Cac8I	GCNNGC	7 cut(s)	287, 328, 332, 441, 586, 970, 1529
CaiI	CAGNNNCTG	1 cut(s)	602
CciI	TCATGA	1 cut(s)	997
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	1427
Cfr9I	CCCGGG	1 cut(s)	1322
ClaI	ATCGAT	1 cut(s)	362
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	3 cut(s)	199, 217, 1112
CviAII	CATG	9 cut(s)	272, 431, 527, 536, 646, 988, 998, 1271, 1528
CviQI	GTAC	3 cut(s)	199, 217, 1112
DdeI	CTNAG	5 cut(s)	17, 228, 368, 793, 867
DpnI	GATC	4 cut(s)	808, 932, 1352, 1461
DpnII	GATC	4 cut(s)	806, 930, 1350, 1459
EaeI	YGGCCR	2 cut(s)	180, 328
Eam1104I	CTCTTC	3 cut(s)	468, 657, 1511
EarI	CTCTTC	3 cut(s)	468, 657, 1511
Ecl136II	GAGCTC	3 cut(s)	258, 285, 667
Eco105I	TACGTA	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	1374
Eco24I	GRGCYC	3 cut(s)	260, 287, 669
Eco32I	GATATC	1 cut(s)	1143
Eco47I	GGWCC	1 cut(s)	1427
Eco47III	AGCGCT	1 cut(s)	123
Eco53kI	GAGCTC	3 cut(s)	258, 285, 667
Eco57I	CTGAAG	2 cut(s)	681, 1281
Eco88I	CYCGRG	1 cut(s)	1322
EcoICRI	GAGCTC	3 cut(s)	258, 285, 667
EcoRV	GATATC	1 cut(s)	1143
EcoT22I	ATGCAT	3 cut(s)	631, 838, 1444
EcoT38I	GRGCYC	3 cut(s)	260, 287, 669
FaeI	CATG	9 cut(s)	275, 434, 530, 539, 649, 991, 1001, 1274, 1531
FalI	AAGNNNNNCTT	2 cut(s)	1359, 1391
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	9 cut(s)	271, 430, 526, 535, 645, 987, 997, 1270, 1527
FauI	CCCGC	1 cut(s)	739
FauNDI	CATATG	2 cut(s)	838, 940
FbaI	TGATCA	1 cut(s)	1350
Fnu4HI	GCNGC	4 cut(s)	134, 191, 886, 1217
FokI	GGATG	8 cut(s)	44, 154, 695, 745, 763, 1109, 1196, 1436
FriOI	GRGCYC	3 cut(s)	260, 287, 669
Fsp4HI	GCNGC	4 cut(s)	134, 191, 886, 1217
FspBI	CTAG	3 cut(s)	531, 729, 1050
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	4 cut(s)	134, 191, 886, 1217
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	4 cut(s)	182, 330, 1313, 1374
HapII	CCGG	2 cut(s)	1010, 1323
HgaI	GACGC	1 cut(s)	333
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	9 cut(s)	275, 434, 530, 539, 649, 991, 1001, 1274, 1531
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HindIII	AAGCTT	2 cut(s)	1147, 1355
HinfI	GANTC	7 cut(s)	10, 22, 412, 994, 1100, 1206, 1412
HpaII	CCGG	2 cut(s)	1010, 1323
HphI	GGTGA	2 cut(s)	406, 1067
Hpy166II	GTNNAC	4 cut(s)	711, 953, 1339, 1541
Hpy188I	TCNGA	7 cut(s)	253, 349, 516, 726, 811, 1035, 1420
Hpy188III	TCNNGA	5 cut(s)	241, 778, 998, 1010, 1409
Hpy8I	GTNNAC	4 cut(s)	711, 953, 1339, 1541
Hpy99I	CGWCG	1 cut(s)	349
HpyAV	CCTTC	3 cut(s)	368, 571, 1515
HpyCH4III	ACNGT	4 cut(s)	394, 962, 1333, 1503
HpyCH4IV	ACGT	3 cut(s)	293, 924, 1114
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 449, 1439
HpyF3I	CTNAG	5 cut(s)	17, 228, 368, 793, 867
HpySE526I	ACGT	3 cut(s)	293, 924, 1114
Hsp92II	CATG	9 cut(s)	275, 434, 530, 539, 649, 991, 1001, 1274, 1531
HspAI	GCGC	1 cut(s)	122
Kpn2I	TCCGGA	1 cut(s)	1009
Ksp22I	TGATCA	1 cut(s)	1350
Kzo9I	GATC	4 cut(s)	806, 930, 1350, 1459
LguI	GCTCTTC	1 cut(s)	657
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	4 cut(s)	120, 177, 872, 1228
LweI	GCATC	9 cut(s)	354, 368, 473, 741, 823, 1083, 1131, 1288, 1451
MaeI	CTAG	3 cut(s)	531, 729, 1050
MaeII	ACGT	3 cut(s)	293, 924, 1114
MaeIII	GTNAC	2 cut(s)	172, 394
MalI	GATC	4 cut(s)	808, 932, 1352, 1461
MboI	GATC	4 cut(s)	806, 930, 1350, 1459
MboII	GAAGA	9 cut(s)	478, 485, 674, 910, 940, 1102, 1403, 1508, 1528
MfeI	CAATTG	2 cut(s)	880, 1166
MflI	RGATCY	1 cut(s)	806
MhlI	GDGCHC	3 cut(s)	260, 287, 669
MlsI	TGGCCA	2 cut(s)	182, 330
MluCI	AATT	7 cut(s)	880, 1005, 1041, 1157, 1166, 1227, 1447
MluI	ACGCGT	1 cut(s)	314
MluNI	TGGCCA	2 cut(s)	182, 330
MlyI	GAGTC	2 cut(s)	19, 31
MmeI	TCCRAC	4 cut(s)	327, 410, 1183, 1246
MnlI	CCTC	9 cut(s)	132, 163, 223, 363, 469, 533, 1174, 1273, 1414
Mox20I	TGGCCA	2 cut(s)	182, 330
Mph1103I	ATGCAT	3 cut(s)	631, 838, 1444
MroI	TCCGGA	1 cut(s)	1009
MroXI	GAANNNNTTC	2 cut(s)	477, 875
MscI	TGGCCA	2 cut(s)	182, 330
MseI	TTAA	5 cut(s)	63, 336, 402, 1275, 1485
MslI	CAYNNNNRTG	2 cut(s)	270, 1532
Msp20I	TGGCCA	2 cut(s)	182, 330
MspI	CCGG	2 cut(s)	1010, 1323
MspR9I	CCNGG	2 cut(s)	1323, 1324
MunI	CAATTG	2 cut(s)	880, 1166
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	3 cut(s)	130, 449, 1439
NciI	CCSGG	2 cut(s)	1323, 1324
NdeI	CATATG	2 cut(s)	838, 940
NdeII	GATC	4 cut(s)	806, 930, 1350, 1459
NlaIII	CATG	9 cut(s)	275, 434, 530, 539, 649, 991, 1001, 1274, 1531
NmeAIII	GCCGAG	1 cut(s)	914
NmuCI	GTSAC	1 cut(s)	394
NsiI	ATGCAT	3 cut(s)	631, 838, 1444
NspI	RCATGY	2 cut(s)	1274, 1531
PaeI	GCATGC	1 cut(s)	1531
PagI	TCATGA	1 cut(s)	997
PceI	AGGCCT	1 cut(s)	1374
PciI	ACATGT	1 cut(s)	1270
PciSI	GCTCTTC	1 cut(s)	657
PdmI	GAANNNNTTC	2 cut(s)	477, 875
PfeI	GAWTC	5 cut(s)	412, 994, 1100, 1206, 1412
PkrI	GCNGC	4 cut(s)	135, 192, 887, 1218
PleI	GAGTC	2 cut(s)	18, 30
PpsI	GAGTC	2 cut(s)	18, 30
Ppu21I	YACGTR	2 cut(s)	294, 1115
PscI	ACATGT	1 cut(s)	1270
PsiI	TTATAA	1 cut(s)	1191
Psp124BI	GAGCTC	3 cut(s)	260, 287, 669
PspPI	GGNCC	1 cut(s)	1427
PsrI	GAACNNNNNNTAC	2 cut(s)	1012, 1044
PstI	CTGCAG	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	806
RsaI	GTAC	3 cut(s)	200, 218, 1113
RsaNI	GTAC	3 cut(s)	199, 217, 1112
RseI	CAYNNNNRTG	2 cut(s)	270, 1532
SacI	GAGCTC	3 cut(s)	260, 287, 669
SapI	GCTCTTC	1 cut(s)	657
SaqAI	TTAA	5 cut(s)	63, 336, 402, 1275, 1485
SatI	GCNGC	4 cut(s)	134, 191, 886, 1217
Sau3AI	GATC	4 cut(s)	806, 930, 1350, 1459
Sau96I	GGNCC	1 cut(s)	1427
SchI	GAGTC	2 cut(s)	19, 31
ScrFI	CCNGG	2 cut(s)	1323, 1324
SduI	GDGCHC	3 cut(s)	260, 287, 669
SfaNI	GCATC	9 cut(s)	354, 368, 473, 741, 823, 1083, 1131, 1288, 1451
SfcI	CTRYAG	2 cut(s)	134, 1024
SinI	GGWCC	1 cut(s)	1427
SmaI	CCCGGG	1 cut(s)	1324
SmiMI	CAYNNNNRTG	2 cut(s)	270, 1532
SmlI	CTYRAG	4 cut(s)	695, 755, 778, 914
SmoI	CTYRAG	4 cut(s)	695, 755, 778, 914
SnaBI	TACGTA	1 cut(s)	294
SphI	GCATGC	1 cut(s)	1531
Sse9I	AATT	7 cut(s)	880, 1005, 1041, 1157, 1166, 1227, 1447
SseBI	AGGCCT	1 cut(s)	1374
SsiI	CCGC	1 cut(s)	746
SspI	AATATT	2 cut(s)	354, 511
SspMI	CTAG	3 cut(s)	531, 729, 1050
SstI	GAGCTC	3 cut(s)	260, 287, 669
StuI	AGGCCT	1 cut(s)	1374
StyD4I	CCNGG	2 cut(s)	1321, 1322
TaaI	ACNGT	4 cut(s)	394, 962, 1333, 1503
TaiI	ACGT	3 cut(s)	296, 927, 1117
TaqI	TCGA	3 cut(s)	240, 362, 481
TasI	AATT	7 cut(s)	880, 1005, 1041, 1157, 1166, 1227, 1447
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	5 cut(s)	412, 994, 1100, 1206, 1412
Tru1I	TTAA	5 cut(s)	63, 336, 402, 1275, 1485
Tru9I	TTAA	5 cut(s)	63, 336, 402, 1275, 1485
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	4 cut(s)	133, 190, 885, 1216
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	7 cut(s)	17, 53, 173, 590, 699, 776, 1319
TspMI	CCCGGG	1 cut(s)	1322
VpaK11BI	GGWCC	1 cut(s)	1427
XapI	RAATTY	1 cut(s)	1041
XceI	RCATGY	2 cut(s)	1274, 1531
XmaI	CCCGGG	1 cut(s)	1322
XmnI	GAANNNNTTC	2 cut(s)	477, 875
XspI	CTAG	3 cut(s)	531, 729, 1050
Zsp2I	ATGCAT	3 cut(s)	631, 838, 1444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.