Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006344

Physical Location & Seq

Genomic Coordinates Reverse (-)

18322555 .. 18325161

Gene Structure 2607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1203500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2607 bp

ATGTTTCTGAAGCTGCACTTGGACACCAGTTGCTTCCCAATTCTGGGTTCCATAAAAACGTCCCCCAACGCAGGACGATCTCCACTGGACAAACTCGAACTTATAAGCAACGATAGGAAACAGAGAGTGGTTCAGAGTCCCAATGGAGGAGGAGGGCTGAAGAAGAAGTTGGGTGAAGTTCATCGACCCACAAATGGCAGGTGTGGAAATGGCGTCGTTGTTCATGAGGTCGAGCTGAAAAAACTCCGTTTTGTGAAGAACCCAGGTGGGGAGAAGAGGAAAAACGTAAAGGGTAGTTGCCGTTTTGCGAAAAGTGGAGATATTGATGGTGGGTTGAGGGTGGGGAATGGGAATGGAGTGGTGAAGAAAGTGCACTCCAGGTGTTCGACCAAATGCGTCAGTTACGGAGGTTGCATTCCTGCAATTTTGAAGGCTTTGGATGAAGTTGAGGATTTGGATGAGGCTCTGAGGCCGTGGGAAGATAGGCTTACTAACAAGGAAAGGAGTATAATTTTGAAGGAGCAGCTGTGTTGGAAAAGGGCTTGGGCGATTTTTGAGTGGTTTAAGAGAAAGGATTGTTATGAGGTGAATGTGATTCACTATAATATAGTGCTTAGAATTCTTGGGAAGGCGAGGAAGTGGAGCCGTGTCGAGAGCCTTTGGGATGAGATGAAGGTTAACGGAATAGCACCGATAAATTCAACTTATGGAACTTTGATTGATGTTTACAGTAAAGGCGGGCTTAAAGAAGAAGCACTTGTTTGGCTGGACAAGATGAACGAACAAGGAATGAAACCGGATGAGGTTACCATGGGGATTGTCGTTCAATTGTATAAGAAAGCGAGAGAGTTTCGAAACGCTGAGGATTTTTTCAACAAATGGTCGTTGAGCGTATCTTTGAGACAAGAACAAGAGGGCACTTCTACAACAAGTGCTTCTGGATTGCAAAGTTCTTTGCATTCTCACATTTCTTTGAGCTCGCATACATACAATACATTGATTGACACATATGGAAAGGATGGCCAACTTAAAGAAGCATCTGAAATATTTGCAATGATGCTTAGGGAAGGGATTGCTCCAACTACAGTTACTTTCAATACAATGATTCACATTTGTGGTAACCATGGCCGGCTGGAAGAAGTTGCTTCCCTATTGCAGAAGATGGAAGAGCTTCGATGTCCACCCGATACAAGAACATATAATATTCTAATTTCCCTCCATGCAAAGCATGACAATATAGACATGGCGACAAACTACTTCACAAAGATGAAGGAGGCTCACCTTGAGCCAGACCCTGTCAGTTACCGCATCCTTTTGTATGCGTACTCAATAAGGCACATGGTTAGCAAAGCTGAAGTCCTCATATCAGAGATGGATGAAAAGGGTCTCGAGATTGATGAGTTCACTCAGACAGCTCTGACAAGGATGTACATAGATGCCAGGATGCTTGAAAAGTCATGGTTTTGGTTCATGAGATTTCATCTTTCAGGGAATTTGAGTTCTGAGTGCTTTTCTGCCAACATTGATGCATATGGAGAGCGTGGCCATATTTTGGAAGCTGAGAAAGTTTTCATTTGCTGCCTAGAAGCAAAGAAATTGAGTGTCCTTGAGTTTAACGTGATGATTAAAGCTTATGGGGTGGGGAAACAGTATGGTAAAGCATGTCAGCTGTTTGATAGCATGGAGAGTCATGGCGTAGTTCCGGACAAATGTAGCTATAGCTCTCTGATACAAATTTTGGCTAGTGCTGATATGCCACATACAGCAAAACCCTATCTCAGGAAGATGCAGGAGGCAGGATTGGTAAATCATTGCCTCCCGTATTGTGCTGTGATATCAAGCTTTGCAAAGTTAGGAGAACTGGAAATGGCAGAGGAACTATACAAAGAGATGGTCAGATTCAATGTTCAGCCGGATGTTATTATCTTTGGGGTGTTGATAAATGCTTTTGCTGATATCGGAAGTGTTAATGAAGCTCTGAGTTATGCTGATGCAATGAAAAAGGCAGGTTTGCCTGGGAACACGGTGATTTACAACTCCTTGATCAAGCTCTATACTAAAGTTGGATTTTTGAATGAAGCAGAAGAAACATACAGACTTCTTCAATCTTCAGAGGATGGTCATGCTATTTATGCTTCAAATTGTATGATTGACCTTTATAGCGAGCGATGTATGGTTGAGCCAGCAGAAAAACTCTTTGATAGCTTGAAGAGCAAGGGAGCTGCAAATGAGTTTACATACGCAATGATGTTGTGCATGTATAAGAAACTGGGGAGGTTTGAGGAGGCCATTCAGATTGCAATGCAGATGAGAGAACTGCGACTTTTAACTGATTTGCTCAGTTATAATAATGTGCTTGGGCTGTATGCGATGTATGGAAGATTCAAAGAGGTAGTGGCAACTTTCAAGGAAATGATAAAAGCTTCCGTTCAACCTGATGATCATACATTCAAATCACTTGGAATTGTTTTGGTGAAATCTGGGATTTCAAAACAGGCTGTCGGCAATCTGGAAGTATCAGTGAAGAAGGATGCTCAGCGTGGGTTGCGAGCGTGGATTTCAGCCCTCTCATCTGTTGTGAGATTAAATGAAAGTAATTATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

869

Amino Acids

97.85

Weight (kDa)

8.37

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	197 - 241	3e-07	PPR repeat family
PPR_2	PF13041	235 - 276	1.2e-06	PPR repeat family
TPR_24	PF23276	322 - 418	2.1e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	323 - 374	2.8e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	325 - 353	9.1e-06	PPR repeat
PPR_2	PF13041	327 - 372	7.6e-13	PPR repeat family
PPR	PF01535	329 - 358	3.2e-07	PPR repeat
PPR_long	PF17177	333 - 479	8.8e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	360 - 407	6.6e-13	PPR repeat family
PPR	PF01535	363 - 393	1.8e-06	PPR repeat
PPR_2	PF13041	395 - 442	4.7e-10	PPR repeat family
TPR_24	PF23276	532 - 631	4.1e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	538 - 581	1.6e-08	PPR repeat family
PPR_long	PF17177	553 - 703	8.2e-09	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	608 - 636	7.1e-06	PPR repeat
PPR_2	PF13041	610 - 651	4e-07	PPR repeat family
PPR_3	PF13812	627 - 686	3.5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	779 - 820	5.3e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23020
fragaria_vesca	FvH4_4g02020
malus_domestica	MD13G1203500.v1.1 MD16G1205100.v1.1
prunus_persica	Prupe.1G026500_v2.0.a1
pyrus_communis	pycom13g17680
rosa_chinensis	RchiOBHm_Chr4g0388991 RchiOBHm_Chr4g0389031 RchiOBHm_Chr4g0389081 RchiOBHm_Chr4g0389161 RchiOBHm_Chr4g0389171
rosa_laevigata	RLG00000010001
rosa_multiflora	Rmu_sc0001395.1_g000006
rosa_roxburghii	Rroxscaffold_5G00335330
rosa_rugosa	Rorug03G0321900
rosa_samantha	Rh4AG026400 Rh4BG019600 Rh4BG019800 Rh4BG019900 Rh4BG020200 Rh4BG020300 Rh4CG029400 Rh4DG020000 Rh4DG020400 Rh4DG020500 Rh4DG020900
rosa_wichuraiana	Rw4G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	104, 2346
AarI	CACCTGC	1 cut(s)	189
Acc36I	ACCTGC	2 cut(s)	189, 1997
AccB7I	CCANNNNNTGG	1 cut(s)	1552
AccIII	TCCGGA	1 cut(s)	1702
AciI	CCGC	2 cut(s)	738, 1306
AcoI	YGGCCR	3 cut(s)	1021, 1126, 1543
AcsI	RAATTY	4 cut(s)	618, 697, 1492, 1734
AcuI	CTGAAG	4 cut(s)	29, 179, 1374, 2094
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	2 cut(s)	1325, 1430
AfiI	CCNNNNNNNGG	8 cut(s)	43, 44, 71, 146, 194, 268, 1552, 1779
AjnI	CCWGG	4 cut(s)	262, 377, 1439, 2014
AjuI	GAANNNNNNNTTGG	5 cut(s)	31, 34, 63, 152, 184
AleI	CACNNNNGTG	1 cut(s)	1113
AloI	GAACNNNNNNTCC	2 cut(s)	1483, 1515
Alw21I	GWGCWC	2 cut(s)	375, 980
Alw26I	GTCTC	2 cut(s)	895, 1391
Alw44I	GTGCAC	1 cut(s)	371
AlwNI	CAGNNNCTG	1 cut(s)	1295
Ama87I	CYCGRG	1 cut(s)	1388
Aor13HI	TCCGGA	1 cut(s)	1702
AoxI	GGCC	5 cut(s)	470, 1021, 1126, 1543, 2286
ApaLI	GTGCAC	1 cut(s)	371
ApeKI	GCWGC	4 cut(s)	13, 523, 1578, 2222
ApoI	RAATTY	4 cut(s)	618, 697, 1492, 1734
ArsI	GACNNNNNNTTYG	4 cut(s)	1341, 1373, 1878, 1910
Asp700I	GAANNNNTTC	2 cut(s)	1170, 1568
AsuHPI	GGTGA	6 cut(s)	185, 373, 598, 1271, 2038, 2485
AsuII	TTCGAA	1 cut(s)	853
AvaI	CYCGRG	1 cut(s)	1388
BaeGI	GKGCMC	2 cut(s)	375, 920
BalI	TGGCCA	2 cut(s)	1023, 1545
BanII	GRGCYC	1 cut(s)	980
Bbv12I	GWGCWC	2 cut(s)	375, 980
BbvCI	CCTCAGC	1 cut(s)	861
BbvI	GCAGC	3 cut(s)	535, 1565, 2209
BccI	CCATC	6 cut(s)	320, 1013, 1156, 1366, 1885, 2111
BceAI	ACGGC	3 cut(s)	285, 457, 630
BciT130I	CCWGG	4 cut(s)	264, 379, 1441, 2016
BclI	TGATCA	2 cut(s)	2043, 2440
BcoDI	GTCTC	2 cut(s)	895, 1391
BfaI	CTAG	2 cut(s)	1583, 1743
BfmI	CTRYAG	3 cut(s)	1083, 1717, 2603
BfuAI	ACCTGC	2 cut(s)	189, 1997
BisI	GCNGC	4 cut(s)	14, 524, 1579, 2223
BlpI	GCTNAGC	1 cut(s)	2535
BlsI	GCNGC	4 cut(s)	15, 525, 1580, 2224
Bme1390I	CCNGG	4 cut(s)	264, 379, 1441, 2016
BmeT110I	CYCGRG	1 cut(s)	1388
BmiI	GGNNCC	2 cut(s)	49, 644
BmrFI	CCNGG	4 cut(s)	264, 379, 1441, 2016
BmrI	ACTGGG	1 cut(s)	2279
BmsI	GCATC	9 cut(s)	1046, 1047, 1317, 1426, 1434, 1516, 1776, 1981, 2521
BmuI	ACTGGG	1 cut(s)	2279
BpmI	CTGGAG	1 cut(s)	361
Bpu10I	CCTNAGC	2 cut(s)	861, 1061
Bpu1102I	GCTNAGC	1 cut(s)	2535
Bpu14I	TTCGAA	1 cut(s)	853
BpuEI	CTTGAG	2 cut(s)	1304, 1628
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	1391
BsaJI	CCNNGG	5 cut(s)	262, 473, 810, 1123, 2015
BsaWI	WCCGGW	2 cut(s)	796, 1702
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bsc4I	CCNNNNNNNGG	8 cut(s)	43, 44, 71, 146, 194, 268, 1552, 1779
Bse118I	RCCGGY	1 cut(s)	1128
Bse1I	ACTGG	4 cut(s)	27, 90, 1866, 2274
Bse3DI	GCAATG	5 cut(s)	1059, 1810, 2001, 2250, 2307
BseAI	TCCGGA	1 cut(s)	1702
BseBI	CCWGG	4 cut(s)	264, 379, 1441, 2016
BseDI	CCNNGG	5 cut(s)	262, 473, 810, 1123, 2015
BseLI	CCNNNNNNNGG	8 cut(s)	43, 44, 71, 146, 194, 268, 1552, 1779
BseMI	GCAATG	5 cut(s)	1059, 1810, 2001, 2250, 2307
BseMII	CTCAG	9 cut(s)	458, 852, 1421, 1494, 1551, 1792, 1970, 2353, 2549
BseNI	ACTGG	4 cut(s)	27, 90, 1866, 2274
BseRI	GAGGAG	3 cut(s)	162, 165, 2297
BseSI	GKGCMC	2 cut(s)	375, 920
BseXI	GCAGC	3 cut(s)	535, 1565, 2209
BshFI	GGCC	5 cut(s)	472, 1023, 1128, 1545, 2288
BsiHKAI	GWGCWC	2 cut(s)	375, 980
BsiHKCI	CYCGRG	1 cut(s)	1388
BsiSI	CCGG	4 cut(s)	797, 1129, 1703, 1913
BslFI	GGGAC	2 cut(s)	46, 123
BslI	CCNNNNNNNGG	8 cut(s)	43, 44, 71, 146, 194, 268, 1552, 1779
BsmAI	GTCTC	2 cut(s)	895, 1391
BsmFI	GGGAC	2 cut(s)	46, 123
BsmI	GAATGC	2 cut(s)	414, 958
BsnI	GGCC	5 cut(s)	472, 1023, 1128, 1545, 2288
Bso31I	GGTCTC	1 cut(s)	1391
BsoBI	CYCGRG	1 cut(s)	1388
Bsp119I	TTCGAA	1 cut(s)	853
Bsp1286I	GDGCHC	3 cut(s)	375, 920, 980
Bsp13I	TCCGGA	1 cut(s)	1702
Bsp1407I	TGTACA	1 cut(s)	1428
Bsp143I	GATC	3 cut(s)	77, 2043, 2440
Bsp1720I	GCTNAGC	1 cut(s)	2535
Bsp19I	CCATGG	2 cut(s)	810, 1123
BspACI	CCGC	2 cut(s)	738, 1306
BspANI	GGCC	5 cut(s)	472, 1023, 1128, 1545, 2288
BspCNI	CTCAG	9 cut(s)	459, 853, 1420, 1495, 1552, 1791, 1971, 2352, 2548
BspEI	TCCGGA	1 cut(s)	1702
BspHI	TCATGA	2 cut(s)	223, 1470
BspLI	GGNNCC	2 cut(s)	49, 644
BspMI	ACCTGC	2 cut(s)	189, 1997
BspQI	GCTCTTC	2 cut(s)	1161, 2204
BspT104I	TTCGAA	1 cut(s)	853
BspTNI	GGTCTC	1 cut(s)	1391
BsrDI	GCAATG	5 cut(s)	1059, 1810, 2001, 2250, 2307
BsrFI	RCCGGY	1 cut(s)	1128
BsrGI	TGTACA	1 cut(s)	1428
BsrI	ACTGG	4 cut(s)	27, 90, 1866, 2274
BssAI	RCCGGY	1 cut(s)	1128
BssECI	CCNNGG	5 cut(s)	262, 473, 810, 1123, 2015
BssMI	GATC	3 cut(s)	77, 2043, 2440
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	810, 1123
Bst2UI	CCWGG	4 cut(s)	264, 379, 1441, 2016
Bst4CI	ACNGT	4 cut(s)	731, 1087, 1650, 2026
Bst6I	CTCTTC	3 cut(s)	269, 1161, 2204
BstACI	GRCGYC	1 cut(s)	213
BstAUI	TGTACA	1 cut(s)	1428
BstBI	TTCGAA	1 cut(s)	853
BstC8I	GCNNGC	6 cut(s)	740, 980, 1130, 2165, 2184, 2550
BstDSI	CCRYGG	3 cut(s)	473, 810, 1123
BstEII	GGTNACC	2 cut(s)	805, 1118
BstENI	CCTNNNNNAGG	1 cut(s)	1777
BstKTI	GATC	3 cut(s)	80, 2046, 2443
BstMAI	GTCTC	2 cut(s)	895, 1391
BstMBI	GATC	3 cut(s)	77, 2043, 2440
BstMWI	GCNNNNNNNGC	3 cut(s)	2132, 2211, 2545
BstNI	CCWGG	4 cut(s)	264, 379, 1441, 2016
BstNSI	RCATGY	2 cut(s)	1665, 2260
BstPI	GGTNACC	2 cut(s)	805, 1118
BstSCI	CCNGG	4 cut(s)	262, 377, 1439, 2014
BstSFI	CTRYAG	3 cut(s)	1083, 1717, 2603
BstSLI	GKGCMC	2 cut(s)	375, 920
BstV1I	GCAGC	3 cut(s)	535, 1565, 2209
BsuRI	GGCC	5 cut(s)	472, 1023, 1128, 1545, 2288
BtgI	CCRYGG	3 cut(s)	473, 810, 1123
BtgZI	GCGATG	2 cut(s)	2182, 2384
BtsIMutI	CAGTG	2 cut(s)	83, 2526
BveI	ACCTGC	2 cut(s)	189, 1997
Cac8I	GCNNGC	6 cut(s)	740, 980, 1130, 2165, 2184, 2550
CaiI	CAGNNNCTG	1 cut(s)	1295
CciI	TCATGA	2 cut(s)	223, 1470
Cfr10I	RCCGGY	1 cut(s)	1128
CseI	GACGC	2 cut(s)	202, 385
Csp6I	GTAC	2 cut(s)	1324, 1429
CviQI	GTAC	2 cut(s)	1324, 1429
DpnI	GATC	3 cut(s)	79, 2045, 2442
DpnII	GATC	3 cut(s)	77, 2043, 2440
EaeI	YGGCCR	3 cut(s)	1021, 1126, 1543
Eam1104I	CTCTTC	3 cut(s)	269, 1161, 2204
EarI	CTCTTC	3 cut(s)	269, 1161, 2204
Ecl136II	GAGCTC	1 cut(s)	978
Eco130I	CCWWGG	2 cut(s)	810, 1123
Eco24I	GRGCYC	1 cut(s)	980
Eco31I	GGTCTC	1 cut(s)	1391
Eco32I	GATATC	2 cut(s)	1836, 1957
Eco53kI	GAGCTC	1 cut(s)	978
Eco57I	CTGAAG	4 cut(s)	29, 179, 1374, 2094
Eco88I	CYCGRG	1 cut(s)	1388
Eco91I	GGTNACC	2 cut(s)	805, 1118
EcoICRI	GAGCTC	1 cut(s)	978
EcoNI	CCTNNNNNAGG	1 cut(s)	1777
EcoO65I	GGTNACC	2 cut(s)	805, 1118
EcoRI	GAATTC	1 cut(s)	618
EcoRII	CCWGG	4 cut(s)	262, 377, 1439, 2014
EcoRV	GATATC	2 cut(s)	1836, 1957
EcoT14I	CCWWGG	2 cut(s)	810, 1123
EcoT22I	ATGCAT	1 cut(s)	1531
EcoT38I	GRGCYC	1 cut(s)	980
ErhI	CCWWGG	2 cut(s)	810, 1123
FalI	AAGNNNNNCTT	7 cut(s)	34, 471, 503, 726, 758, 741, 773
FaqI	GGGAC	2 cut(s)	46, 123
FauI	CCCGC	1 cut(s)	731
FauNDI	CATATG	2 cut(s)	1009, 1531
FbaI	TGATCA	2 cut(s)	2043, 2440
Fnu4HI	GCNGC	4 cut(s)	14, 524, 1579, 2223
FriOI	GRGCYC	1 cut(s)	980
Fsp4HI	GCNGC	4 cut(s)	14, 524, 1579, 2223
FspBI	CTAG	2 cut(s)	1583, 1743
GluI	GCNGC	4 cut(s)	14, 524, 1579, 2223
GsuI	CTGGAG	1 cut(s)	361
HaeIII	GGCC	5 cut(s)	472, 1023, 1128, 1545, 2288
HapII	CCGG	4 cut(s)	797, 1129, 1703, 1913
HgaI	GACGC	2 cut(s)	202, 385
Hin1I	GRCGYC	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HindIII	AAGCTT	3 cut(s)	1629, 1840, 2421
HinfI	GANTC	6 cut(s)	136, 595, 1105, 1687, 1899, 2382
HpaI	GTTAAC	1 cut(s)	679
HpaII	CCGG	4 cut(s)	797, 1129, 1703, 1913
HphI	GGTGA	6 cut(s)	185, 373, 598, 1271, 2038, 2485
Hpy166II	GTNNAC	6 cut(s)	373, 679, 727, 1181, 1404, 2235
Hpy188III	TCNNGA	9 cut(s)	224, 652, 939, 1388, 1390, 1471, 1703, 1780, 2510
Hpy8I	GTNNAC	6 cut(s)	373, 679, 727, 1181, 1404, 2235
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	7 cut(s)	424, 511, 622, 667, 1061, 1264, 2521
HpyCH4III	ACNGT	4 cut(s)	731, 1087, 1650, 2026
HpyCH4IV	ACGT	3 cut(s)	59, 285, 1617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	2132, 2211, 2545
HpySE526I	ACGT	3 cut(s)	59, 285, 1617
Hsp92I	GRCGYC	1 cut(s)	213
Kpn2I	TCCGGA	1 cut(s)	1702
KroI	GCCGGC	1 cut(s)	1128
KroNI	GCCGGC	1 cut(s)	1130
Ksp22I	TGATCA	2 cut(s)	2043, 2440
KspAI	GTTAAC	1 cut(s)	679
Kzo9I	GATC	3 cut(s)	77, 2043, 2440
LguI	GCTCTTC	2 cut(s)	1161, 2204
LmnI	GCTCC	4 cut(s)	520, 642, 1081, 2219
Lsp1109I	GCAGC	3 cut(s)	535, 1565, 2209
LweI	GCATC	9 cut(s)	1046, 1047, 1317, 1426, 1434, 1516, 1776, 1981, 2521
MaeI	CTAG	2 cut(s)	1583, 1743
MaeII	ACGT	3 cut(s)	59, 285, 1617
MaeIII	GTNAC	5 cut(s)	401, 805, 1087, 1118, 1301
MalI	GATC	3 cut(s)	79, 2045, 2442
MboI	GATC	3 cut(s)	77, 2043, 2440
MfeI	CAATTG	1 cut(s)	827
MhlI	GDGCHC	3 cut(s)	375, 920, 980
MlsI	TGGCCA	2 cut(s)	1023, 1545
MluNI	TGGCCA	2 cut(s)	1023, 1545
MlyI	GAGTC	2 cut(s)	145, 1696
MmeI	TCCRAC	3 cut(s)	512, 1103, 2044
Mox20I	TGGCCA	2 cut(s)	1023, 1545
Mph1103I	ATGCAT	1 cut(s)	1531
MroI	TCCGGA	1 cut(s)	1702
MroNI	GCCGGC	1 cut(s)	1128
MroXI	GAANNNNTTC	2 cut(s)	1170, 1568
MscI	TGGCCA	2 cut(s)	1023, 1545
MseI	TTAA	9 cut(s)	564, 678, 744, 1029, 1614, 1626, 1968, 2327, 2585
MslI	CAYNNNNRTG	2 cut(s)	1113, 1265
Msp20I	TGGCCA	2 cut(s)	1023, 1545
MspA1I	CMGCKG	2 cut(s)	526, 1669
MspI	CCGG	4 cut(s)	797, 1129, 1703, 1913
MspR9I	CCNGG	4 cut(s)	264, 379, 1441, 2016
MunI	CAATTG	1 cut(s)	827
Mva1269I	GAATGC	2 cut(s)	414, 958
MvaI	CCWGG	4 cut(s)	264, 379, 1441, 2016
MwoI	GCNNNNNNNGC	3 cut(s)	2132, 2211, 2545
NaeI	GCCGGC	1 cut(s)	1130
NcoI	CCATGG	2 cut(s)	810, 1123
NdeI	CATATG	2 cut(s)	1009, 1531
NdeII	GATC	3 cut(s)	77, 2043, 2440
NgoMIV	GCCGGC	1 cut(s)	1128
NlaIV	GGNNCC	2 cut(s)	49, 644
NsiI	ATGCAT	1 cut(s)	1531
NspI	RCATGY	2 cut(s)	1665, 2260
NspV	TTCGAA	1 cut(s)	853
OliI	CACNNNNGTG	1 cut(s)	1113
PaeR7I	CTCGAG	1 cut(s)	1388
PagI	TCATGA	2 cut(s)	223, 1470
PaqCI	CACCTGC	1 cut(s)	189
PciSI	GCTCTTC	2 cut(s)	1161, 2204
PctI	GAATGC	2 cut(s)	414, 958
PdiI	GCCGGC	1 cut(s)	1130
PdmI	GAANNNNTTC	2 cut(s)	1170, 1568
PfeI	GAWTC	4 cut(s)	595, 1105, 1899, 2382
PflFI	GACNNNGTC	1 cut(s)	1295
PflMI	CCANNNNNTGG	1 cut(s)	1552
PkrI	GCNGC	4 cut(s)	15, 525, 1580, 2224
PleI	GAGTC	2 cut(s)	144, 1695
PpsI	GAGTC	2 cut(s)	144, 1695
PsiI	TTATAA	2 cut(s)	104, 2346
Psp124BI	GAGCTC	1 cut(s)	980
Psp6I	CCWGG	4 cut(s)	262, 377, 1439, 2014
PspEI	GGTNACC	2 cut(s)	805, 1118
PspGI	CCWGG	4 cut(s)	262, 377, 1439, 2014
PspN4I	GGNNCC	2 cut(s)	49, 644
PstNI	CAGNNNCTG	1 cut(s)	1295
PsyI	GACNNNGTC	1 cut(s)	1295
PvuII	CAGCTG	2 cut(s)	526, 1669
RsaI	GTAC	2 cut(s)	1325, 1430
RsaNI	GTAC	2 cut(s)	1324, 1429
RseI	CAYNNNNRTG	2 cut(s)	1113, 1265
SacI	GAGCTC	1 cut(s)	980
SapI	GCTCTTC	2 cut(s)	1161, 2204
SaqAI	TTAA	9 cut(s)	564, 678, 744, 1029, 1614, 1626, 1968, 2327, 2585
SatI	GCNGC	4 cut(s)	14, 524, 1579, 2223
Sau3AI	GATC	3 cut(s)	77, 2043, 2440
SchI	GAGTC	2 cut(s)	145, 1696
ScrFI	CCNGG	4 cut(s)	264, 379, 1441, 2016
SduI	GDGCHC	3 cut(s)	375, 920, 980
SfaNI	GCATC	9 cut(s)	1046, 1047, 1317, 1426, 1434, 1516, 1776, 1981, 2521
SfcI	CTRYAG	3 cut(s)	1083, 1717, 2603
Sfr274I	CTCGAG	1 cut(s)	1388
SfuI	TTCGAA	1 cut(s)	853
SlaI	CTCGAG	1 cut(s)	1388
SmiMI	CAYNNNNRTG	2 cut(s)	1113, 1265
SmlI	CTYRAG	3 cut(s)	1283, 1388, 1607
SmoI	CTYRAG	3 cut(s)	1283, 1388, 1607
SsiI	CCGC	2 cut(s)	738, 1306
SspI	AATATT	2 cut(s)	1047, 1204
SspMI	CTAG	2 cut(s)	1583, 1743
SstI	GAGCTC	1 cut(s)	980
StyD4I	CCNGG	4 cut(s)	262, 377, 1439, 2014
StyI	CCWWGG	2 cut(s)	810, 1123
TaaI	ACNGT	4 cut(s)	731, 1087, 1650, 2026
TaiI	ACGT	3 cut(s)	62, 288, 1620
TaqI	TCGA	8 cut(s)	96, 184, 231, 386, 651, 853, 1174, 1389
TatI	WGTACW	1 cut(s)	1428
TfiI	GAWTC	4 cut(s)	595, 1105, 1899, 2382
Tru1I	TTAA	9 cut(s)	564, 678, 744, 1029, 1614, 1626, 1968, 2327, 2585
Tru9I	TTAA	9 cut(s)	564, 678, 744, 1029, 1614, 1626, 1968, 2327, 2585
TscAI	CASTG	2 cut(s)	90, 2526
TseI	GCWGC	4 cut(s)	13, 523, 1578, 2222
TspGWI	ACGGA	4 cut(s)	236, 420, 696, 2416
TspRI	CASTG	2 cut(s)	90, 2526
Tth111I	GACNNNGTC	1 cut(s)	1295
Van91I	CCANNNNNTGG	1 cut(s)	1552
VneI	GTGCAC	1 cut(s)	371
XagI	CCTNNNNNAGG	1 cut(s)	1777
XapI	RAATTY	4 cut(s)	618, 697, 1492, 1734
XceI	RCATGY	2 cut(s)	1665, 2260
XhoI	CTCGAG	1 cut(s)	1388
XmnI	GAANNNNTTC	2 cut(s)	1170, 1568
XspI	CTAG	2 cut(s)	1583, 1743
Zsp2I	ATGCAT	1 cut(s)	1531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.