Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006344

Physical Location & Seq

Genomic Coordinates Forward (+)

34952743 .. 34962846

Gene Structure 10104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0321900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCCTGAGTCGCAGCATCAAGATCAATTGTTGCCAGCAATTTTCTGCGTCACTACATACTCTGAGCCCTTGTGTTTTTATGTAGCTAGACACCTTAGGAACATGAATCACCGATTCCCAAATGTAGCAATATCTGAATTCGTTCTTGATGCTAAGGCCGACAACTATAAAAGCACACTGAAATCTCTTGGTATTTCCTATACGCCAAGCTTCCATTTTTTTAAGAATGGAAAAAAGGTAAATAAGGTAGGTCTTAAGAGGCTCAGAACGGATGCTGAGGCTTATGTCGAATGCTTGAAAAGGATTGTTGAACAACTCTATAACTTTCAACCTACAAAGAGTTCATCTAGCAGGGAGAACAAGAGAACTACTGAAGGAAGTGATGTAGAACGTCCTAAAAAAGTTTCAGGTTTTGCAAGCTGTGAGCTCATTCTATCAAAGGAGGAATATAATTTGGCTGTTAACAGAATTCAAGATGAATCTGTGCCAGCAGTTTTGTACTTCGCTACCTATTCTGAGTTCACCAGTACCATGGTATATGAGTTTCTTCACGAGGATTTGAGTGAGCGATTCCCACATGTAGCAATCTACGAGTTCCTCCTTGATCCTAAGGAAGACGACTACGAAACAACACTGAAAAGTCTAAATATTTCCTCTATTGTCAATGCGCCGATATTCCATTTCTTTAAAAATGGGAAAAAGGTAGATGAGCTAGCCTATGAGAGATTTGTTGAACTTTATCAGTATGGCAGAGACTTGGAAAAGATTCTTGAGAAACTATACAACACTCAACCTGCAATAAGTTCATCTGGAACTGGGAGAAAAACTACTCAAGAATTACAACCTGTGAAAGATAAGGATAGCAAAGGAGTTAGAGGGCAGCGAGGGAGGAAAGTGAGGGATGCCGCAATGATTTCCAAACAGACACAGAGTGGGGGCAATCATCAGTTTGTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

319

Amino Acids

36.67

Weight (kDa)

8.64

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23020
fragaria_vesca	FvH4_4g02020
malus_domestica	MD13G1203500.v1.1 MD16G1205100.v1.1
prunus_persica	Prupe.1G026500_v2.0.a1
pyrus_communis	pycom13g17680
rosa_chinensis	RchiOBHm_Chr4g0388991 RchiOBHm_Chr4g0389031 RchiOBHm_Chr4g0389081 RchiOBHm_Chr4g0389161 RchiOBHm_Chr4g0389171
rosa_laevigata	RLG00000010001
rosa_multiflora	Rmu_sc0001395.1_g000006
rosa_roxburghii	Rroxscaffold_5G00335330
rosa_rugosa	Rorug03G0321900
rosa_samantha	Rh4AG026400 Rh4BG019600 Rh4BG019800 Rh4BG019900 Rh4BG020200 Rh4BG020300 Rh4CG029400 Rh4DG020000 Rh4DG020400 Rh4DG020500 Rh4DG020900
rosa_wichuraiana	Rw4G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	802
AciI	CCGC	1 cut(s)	906
AclWI	GGATC	1 cut(s)	599
AcsI	RAATTY	2 cut(s)	137, 468
AcuI	CTGAAG	1 cut(s)	393
AdeI	CACNNNGTG	1 cut(s)	932
AfaI	GTAC	2 cut(s)	500, 529
AflII	CTTAAG	1 cut(s)	254
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	5 cut(s)	298, 311, 329, 473, 734
AluBI	AGCT	5 cut(s)	86, 210, 420, 427, 712
AluI	AGCT	5 cut(s)	86, 210, 420, 427, 712
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	1 cut(s)	747
AlwI	GGATC	1 cut(s)	599
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	2 cut(s)	13, 880
ApoI	RAATTY	2 cut(s)	137, 468
Asp700I	GAANNNNTTC	2 cut(s)	141, 765
AspLEI	GCGC	1 cut(s)	670
AsuHPI	GGTGA	2 cut(s)	101, 514
AsuNHI	GCTAGC	1 cut(s)	712
AxyI	CCTNAGG	2 cut(s)	95, 609
BanII	GRGCYC	2 cut(s)	69, 429
BauI	CACGAG	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	621
Bbv12I	GWGCWC	1 cut(s)	429
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	25, 892
BcoDI	GTCTC	1 cut(s)	747
BfaI	CTAG	3 cut(s)	87, 348, 713
BfrI	CTTAAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	802
BisI	GCNGC	3 cut(s)	14, 881, 906
BlsI	GCNGC	3 cut(s)	15, 882, 907
BmrI	ACTGGG	1 cut(s)	825
BmsI	GCATC	4 cut(s)	25, 139, 262, 892
BmtI	GCTAGC	1 cut(s)	716
BmuI	ACTGGG	1 cut(s)	825
BpiI	GAAGAC	1 cut(s)	621
Bpu10I	CCTNAGC	2 cut(s)	153, 276
BpuEI	CTTGAG	2 cut(s)	791, 816
BsaJI	CCNNGG	1 cut(s)	531
Bse1I	ACTGG	2 cut(s)	525, 820
Bse21I	CCTNAGG	2 cut(s)	95, 609
Bse3DI	GCAATG	1 cut(s)	915
BseDI	CCNNGG	1 cut(s)	531
BseGI	GGATG	2 cut(s)	277, 907
BseMI	GCAATG	1 cut(s)	915
BseMII	CTCAG	4 cut(s)	54, 267, 277, 507
BseNI	ACTGG	2 cut(s)	525, 820
BseXI	GCAGC	2 cut(s)	25, 892
BshFI	GGCC	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	429
BsmAI	GTCTC	1 cut(s)	747
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	158
Bsp1286I	GDGCHC	2 cut(s)	69, 429
Bsp143I	GATC	2 cut(s)	22, 604
Bsp19I	CCATGG	1 cut(s)	531
BspACI	CCGC	1 cut(s)	906
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	4 cut(s)	55, 268, 276, 508
BspMI	ACCTGC	1 cut(s)	802
BspOI	GCTAGC	1 cut(s)	716
BspPI	GGATC	1 cut(s)	599
BspTI	CTTAAG	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	915
BsrI	ACTGG	2 cut(s)	525, 820
BssECI	CCNNGG	1 cut(s)	531
BssMI	GATC	2 cut(s)	22, 604
BssSI	CACGAG	1 cut(s)	551
BssT1I	CCWWGG	1 cut(s)	531
Bst2BI	CACGAG	1 cut(s)	551
BstAFI	CTTAAG	1 cut(s)	254
BstC8I	GCNNGC	4 cut(s)	36, 418, 489, 714
BstDEI	CTNAG	8 cut(s)	6, 63, 95, 153, 263, 276, 516, 609
BstDSI	CCRYGG	1 cut(s)	531
BstF5I	GGATG	2 cut(s)	277, 907
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	2 cut(s)	25, 607
BstMAI	GTCTC	1 cut(s)	747
BstMBI	GATC	2 cut(s)	22, 604
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNSI	RCATGY	1 cut(s)	581
BstV1I	GCAGC	2 cut(s)	25, 892
BstV2I	GAAGAC	1 cut(s)	621
BstXI	CCANNNNNNTGG	1 cut(s)	532
Bsu36I	CCTNAGG	2 cut(s)	95, 609
BsuRI	GGCC	1 cut(s)	158
BtgI	CCRYGG	1 cut(s)	531
BtsCI	GGATG	2 cut(s)	277, 907
BtsIMutI	CAGTG	2 cut(s)	176, 632
BveI	ACCTGC	1 cut(s)	802
Cac8I	GCNNGC	4 cut(s)	36, 418, 489, 714
CfoI	GCGC	1 cut(s)	670
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	499, 528
CviAII	CATG	3 cut(s)	103, 532, 578
CviQI	GTAC	2 cut(s)	499, 528
DdeI	CTNAG	8 cut(s)	6, 63, 95, 153, 263, 276, 516, 609
DpnI	GATC	2 cut(s)	24, 606
DpnII	GATC	2 cut(s)	22, 604
DraI	TTTAAA	1 cut(s)	688
DraIII	CACNNNGTG	1 cut(s)	932
Ecl136II	GAGCTC	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	2 cut(s)	69, 429
Eco53kI	GAGCTC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	393
Eco81I	CCTNAGG	2 cut(s)	95, 609
EcoICRI	GAGCTC	1 cut(s)	427
EcoRI	GAATTC	2 cut(s)	137, 468
EcoT14I	CCWWGG	1 cut(s)	531
EcoT38I	GRGCYC	2 cut(s)	69, 429
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	3 cut(s)	106, 535, 581
FatI	CATG	3 cut(s)	102, 531, 577
Fnu4HI	GCNGC	3 cut(s)	14, 881, 906
FokI	GGATG	2 cut(s)	284, 914
FriOI	GRGCYC	2 cut(s)	69, 429
Fsp4HI	GCNGC	3 cut(s)	14, 881, 906
FspBI	CTAG	3 cut(s)	87, 348, 713
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	3 cut(s)	14, 881, 906
HaeIII	GGCC	1 cut(s)	158
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	1 cut(s)	670
Hin1II	CATG	3 cut(s)	106, 535, 581
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	6 cut(s)	8, 106, 114, 479, 570, 766
HpaI	GTTAAC	1 cut(s)	463
HphI	GGTGA	2 cut(s)	101, 514
Hpy166II	GTNNAC	2 cut(s)	463, 522
Hpy188I	TCNGA	4 cut(s)	64, 136, 266, 517
Hpy188III	TCNNGA	7 cut(s)	20, 146, 473, 551, 770, 810, 833
Hpy8I	GTNNAC	2 cut(s)	463, 522
HpyAV	CCTTC	1 cut(s)	368
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	2 cut(s)	416, 797
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	8 cut(s)	6, 63, 95, 153, 263, 276, 516, 609
HpySE526I	ACGT	1 cut(s)	391
Hsp92II	CATG	3 cut(s)	106, 535, 581
HspAI	GCGC	1 cut(s)	668
KspAI	GTTAAC	1 cut(s)	463
Kzo9I	GATC	2 cut(s)	22, 604
Lsp1109I	GCAGC	2 cut(s)	25, 892
LweI	GCATC	4 cut(s)	25, 139, 262, 892
MaeI	CTAG	3 cut(s)	87, 348, 713
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	24, 606
MboI	GATC	2 cut(s)	22, 604
MboII	GAAGA	2 cut(s)	539, 626
MfeI	CAATTG	1 cut(s)	26
MhlI	GDGCHC	2 cut(s)	69, 429
MluCI	AATT	7 cut(s)	26, 39, 137, 451, 468, 836, 955
MlyI	GAGTC	1 cut(s)	17
MroXI	GAANNNNTTC	2 cut(s)	141, 765
MseI	TTAA	5 cut(s)	222, 255, 462, 687, 958
MspCI	CTTAAG	1 cut(s)	254
MunI	CAATTG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	10
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	2 cut(s)	22, 604
NheI	GCTAGC	1 cut(s)	712
NlaIII	CATG	3 cut(s)	106, 535, 581
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	581
PciI	ACATGT	1 cut(s)	577
PctI	GAATGC	1 cut(s)	296
PdmI	GAANNNNTTC	2 cut(s)	141, 765
PfeI	GAWTC	5 cut(s)	106, 114, 479, 570, 766
PkrI	GCNGC	3 cut(s)	15, 882, 907
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PscI	ACATGT	1 cut(s)	577
Psp124BI	GAGCTC	1 cut(s)	429
RsaI	GTAC	2 cut(s)	500, 529
RsaNI	GTAC	2 cut(s)	499, 528
SacI	GAGCTC	1 cut(s)	429
SaqAI	TTAA	5 cut(s)	222, 255, 462, 687, 958
SatI	GCNGC	3 cut(s)	14, 881, 906
Sau3AI	GATC	2 cut(s)	22, 604
SchI	GAGTC	1 cut(s)	17
SduI	GDGCHC	2 cut(s)	69, 429
SfaNI	GCATC	4 cut(s)	25, 139, 262, 892
SmlI	CTYRAG	3 cut(s)	254, 770, 831
SmoI	CTYRAG	3 cut(s)	254, 770, 831
Sse9I	AATT	7 cut(s)	26, 39, 137, 451, 468, 836, 955
SsiI	CCGC	1 cut(s)	906
SspI	AATATT	1 cut(s)	649
SspMI	CTAG	3 cut(s)	87, 348, 713
SstI	GAGCTC	1 cut(s)	429
StyI	CCWWGG	1 cut(s)	531
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	1 cut(s)	288
TasI	AATT	7 cut(s)	26, 39, 137, 451, 468, 836, 955
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	1 cut(s)	908
TfiI	GAWTC	5 cut(s)	106, 114, 479, 570, 766
Tru1I	TTAA	5 cut(s)	222, 255, 462, 687, 958
Tru9I	TTAA	5 cut(s)	222, 255, 462, 687, 958
TscAI	CASTG	2 cut(s)	183, 639
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	13, 880
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	4 cut(s)	119, 333, 492, 795
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	2 cut(s)	183, 639
Vha464I	CTTAAG	1 cut(s)	254
XapI	RAATTY	2 cut(s)	137, 468
XceI	RCATGY	1 cut(s)	581
XmnI	GAANNNNTTC	2 cut(s)	141, 765
XspI	CTAG	3 cut(s)	87, 348, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.