Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001865

Physical Location & Seq

Genomic Coordinates Reverse (-)

8885818 .. 8893203

Gene Structure 7386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGAGACCGGTACAAGCGTTAGCAACAACAACCAAAGCATCAGAAACGATAGCTATGAAGCAATCAAGAATGGATCATGGTTTAATCAGTTCCGCAACGGCTGCAATCCCTGGATGGCTAGATATGTATACGGTCTGATATTCCTCATTGCGAATCTACTAGCTTGGGCTGCTCGTGATTATGGTCGGGGTGCCTTAAGAAAAGTGACAAGATTCAAGAACTGTAAAGGTGGCGAAAACTGTTTGGGGACCGACGGTGTCTTAAGAGTTAGCTTGGGATGTTTTTTGTTCTACTTTGTTATGTTTCTTTCAACACTTGGTACGTCGAAAACGCATTCATCAAGAGATAGATGGCATTCTGGATGGTGGTTTGTTAAGCTCATCATGTGGCCTGCCTTAACCATCATTCCCTTCTTGCTTCCTTCTTCCATTATTCACCTTTACGGAGAGATTGCCCATTTTGGTGCAGGGGTATTTCTCTTAATACAGCTAATTAGTGTGATCAGTTTCATTCAATGGCTCAACGAATGCTATCAGTCCCAAAAAGATGCAGAAAGATGCCGTGTCTATGTGATGTTACTATCAACTACTTCATACACAGTTTGCATAGTAGGAGTGATTTTGATGTACATTTGGTACGCGCCTGATTCTTCATGTCTTCTCAATATATTCTTTATAACATGGACTTTGTTCCTCATCCAACTCATGACAAGCATCGCTCTCCATCCTAAAGTTAATGCTGGATACTTGACTCCAGCTCTTATGGGACTCTATGTTGTGTTTATATGCTGGTGTGCCATTCGAAGTGAACCAGTGGGCGAAAGTTGTAATAGAAAAGCAGCAGCTTCAAACAGAACAGACTGGCTTACCATCATTAGCTTTGTGGTTGCGCTACTTGCGATGGTTATCGCGACATTTTCGACAGGAATAGACTCCCAATGTTTCCAATTTAAGAAAGATGAGAACGATCAAGAAGAAGAAGCTGAAGATGATGTTCCATATGGCTATGGATTCTTTCATTTTGTGTTTGCCACAGGAGCAATGTACTTCGCTATGCTACTCATCGGTTGGAACACTCATCATCCCATGAAAAAGTGGACGATTGACGTGGGATGGACAAGTACTTGGGTAAGGGTTGTGAACGAGTGGCTTGCGGTTTGCGTATACATTTGGATGTTGGTGGCTCCTCTCATACTAAAGAGCAGAAGACAAACGCCAACTGGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015194 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015825 GO:0015849 GO:0022857 GO:0022889 GO:0032329 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Serinc

Protein Analysis

409

Amino Acids

46.67

Weight (kDa)

8.5

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serinc	PF03348	36 - 402	7.4e-72	Serine incorporator (Serinc)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24460 AT3G24460 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345
fragaria_vesca	FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181
malus_domestica	MD02G1063500.v1.1 MD02G1063900.v1.1 MD15G1188500.v1.1
prunus_persica	Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1
pyrus_communis	pycom02g04240 pycom02g04260 pycom15g16900
rosa_chinensis	RchiOBHm_Chr2g0090921
rosa_laevigata	RLG00000016155
rosa_roxburghii	Rroxscaffold_2G00150750 Rroxscaffold_6G00414260
rosa_rugosa	Rorug02G0010900 Rorug02G0011000 Rorug02G0011000 Rorug02G0011000 Rorug02G0011100 Rorug02G0011100
rosa_samantha	Rh2AG057200 Rh2BG055700 Rh2CG058000 Rh2DG056600
rosa_wichuraiana	Rw2G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	677
AccB1I	GGYRCC	1 cut(s)	191
AccI	GTMKAC	2 cut(s)	129, 1164
AccII	CGCG	2 cut(s)	641, 911
AciI	CCGC	2 cut(s)	94, 1154
AclWI	GGATC	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	1005
AfaI	GTAC	6 cut(s)	13, 322, 629, 638, 1046, 1123
AflII	CTTAAG	2 cut(s)	196, 262
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	4 cut(s)	217, 312, 515, 849
AjiI	CACGTC	1 cut(s)	1108
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	9 cut(s)	54, 164, 273, 379, 490, 758, 845, 879, 983
AluI	AGCT	9 cut(s)	54, 164, 273, 379, 490, 758, 845, 879, 983
AlwI	GGATC	1 cut(s)	82
AoxI	GGCC	1 cut(s)	389
ApeKI	GCWGC	4 cut(s)	102, 170, 839, 842
AsiGI	ACCGGT	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	643, 892
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	428
AsuII	TTCGAA	1 cut(s)	802
AvaII	GGWCC	1 cut(s)	249
BaeI	ACNNNNGTAYC	1 cut(s)	36
BanI	GGYRCC	1 cut(s)	191
BauI	CACGAG	1 cut(s)	174
BbsI	GAAGAC	2 cut(s)	650, 1213
BbvI	GCAGC	4 cut(s)	89, 157, 851, 854
BccI	CCATC	8 cut(s)	109, 345, 357, 410, 732, 878, 895, 1107
BceAI	ACGGC	2 cut(s)	115, 546
BcgI	CGANNNNNNTGC	2 cut(s)	1133, 1167
BciT130I	CCWGG	1 cut(s)	112
BciVI	GTATCC	1 cut(s)	737
BclI	TGATCA	1 cut(s)	501
BfaI	CTAG	2 cut(s)	120, 161
BfrI	CTTAAG	2 cut(s)	196, 262
BfuI	GTATCC	1 cut(s)	737
BisI	GCNGC	4 cut(s)	103, 171, 840, 843
BlsI	GCNGC	4 cut(s)	104, 172, 841, 844
BmcAI	AGTACT	1 cut(s)	1123
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	249
BmgBI	CACGTC	1 cut(s)	1108
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	3 cut(s)	193, 250, 1185
BmrFI	CCNGG	1 cut(s)	112
BmrI	ACTGGG	1 cut(s)	1230
BmsI	GCATC	4 cut(s)	48, 538, 548, 723
BmuI	ACTGGG	1 cut(s)	1230
BpiI	GAAGAC	2 cut(s)	650, 1213
BpmI	CTGGAG	1 cut(s)	738
Bpu14I	TTCGAA	1 cut(s)	802
BsaBI	GATNNNNATC	1 cut(s)	905
BsaJI	CCNNGG	1 cut(s)	110
BsaWI	WCCGGW	1 cut(s)	8
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	3 cut(s)	812, 866, 1225
Bse3DI	GCAATG	2 cut(s)	147, 1047
Bse8I	GATNNNNATC	1 cut(s)	905
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	8 cut(s)	120, 284, 368, 696, 724, 1081, 1118, 1179
BseJI	GATNNNNATC	1 cut(s)	905
BseMI	GCAATG	2 cut(s)	147, 1047
BseNI	ACTGG	3 cut(s)	812, 866, 1225
BseRI	GAGGAG	1 cut(s)	1176
BseXI	GCAGC	4 cut(s)	89, 157, 851, 854
BsgI	GTGCAG	1 cut(s)	486
Bsh1236I	CGCG	2 cut(s)	641, 911
BshFI	GGCC	1 cut(s)	391
BshNI	GGYRCC	1 cut(s)	191
BshTI	ACCGGT	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	3 cut(s)	262, 523, 780
BsmFI	GGGAC	3 cut(s)	262, 523, 780
BsmI	GAATGC	3 cut(s)	334, 355, 533
BsnI	GGCC	1 cut(s)	391
Bsp119I	TTCGAA	1 cut(s)	802
Bsp1407I	TGTACA	1 cut(s)	627
Bsp143I	GATC	3 cut(s)	74, 501, 967
Bsp68I	TCGCGA	1 cut(s)	911
BspACI	CCGC	2 cut(s)	94, 1154
BspANI	GGCC	1 cut(s)	391
BspFNI	CGCG	2 cut(s)	641, 911
BspHI	TCATGA	1 cut(s)	705
BspLI	GGNNCC	3 cut(s)	193, 250, 1185
BspPI	GGATC	1 cut(s)	82
BspT104I	TTCGAA	1 cut(s)	802
BspT107I	GGYRCC	1 cut(s)	191
BspTI	CTTAAG	2 cut(s)	196, 262
BsrDI	GCAATG	2 cut(s)	147, 1047
BsrFI	RCCGGY	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	627
BsrI	ACTGG	3 cut(s)	812, 866, 1225
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	3 cut(s)	74, 501, 967
BssNAI	GTATAC	2 cut(s)	130, 1165
BssSI	CACGAG	1 cut(s)	174
Bst1107I	GTATAC	2 cut(s)	130, 1165
Bst2BI	CACGAG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	5 cut(s)	134, 224, 242, 257, 601
BstAFI	CTTAAG	2 cut(s)	196, 262
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	627
BstBI	TTCGAA	1 cut(s)	802
BstC8I	GCNNGC	2 cut(s)	393, 1152
BstF5I	GGATG	8 cut(s)	120, 284, 368, 696, 724, 1081, 1118, 1179
BstFNI	CGCG	2 cut(s)	641, 911
BstHHI	GCGC	2 cut(s)	643, 892
BstKTI	GATC	3 cut(s)	77, 504, 970
BstMBI	GATC	3 cut(s)	74, 501, 967
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 170, 896, 1037
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	110
BstUI	CGCG	2 cut(s)	641, 911
BstV1I	GCAGC	4 cut(s)	89, 157, 851, 854
BstV2I	GAAGAC	2 cut(s)	650, 1213
BstZ17I	GTATAC	2 cut(s)	130, 1165
BsuI	GTATCC	1 cut(s)	737
BsuRI	GGCC	1 cut(s)	391
BtgZI	GCGATG	2 cut(s)	700, 914
BtrI	CACGTC	1 cut(s)	1108
BtsCI	GGATG	8 cut(s)	120, 284, 368, 696, 724, 1081, 1118, 1179
BtsIMutI	CAGTG	1 cut(s)	819
BtuMI	TCGCGA	1 cut(s)	911
Cac8I	GCNNGC	2 cut(s)	393, 1152
CciI	TCATGA	1 cut(s)	705
CfoI	GCGC	2 cut(s)	643, 892
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	249
Csp6I	GTAC	6 cut(s)	12, 321, 628, 637, 1045, 1122
CspAI	ACCGGT	1 cut(s)	8
CviAII	CATG	6 cut(s)	78, 385, 654, 681, 706, 1087
CviQI	GTAC	6 cut(s)	12, 321, 628, 637, 1045, 1122
DpnI	GATC	3 cut(s)	76, 503, 969
DpnII	GATC	3 cut(s)	74, 501, 967
Eco47I	GGWCC	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	1005
EcoRII	CCWGG	1 cut(s)	110
FaeI	CATG	6 cut(s)	81, 388, 657, 684, 709, 1090
FaqI	GGGAC	3 cut(s)	262, 523, 780
FatI	CATG	6 cut(s)	77, 384, 653, 680, 705, 1086
FauNDI	CATATG	1 cut(s)	1000
FbaI	TGATCA	1 cut(s)	501
FblI	GTMKAC	2 cut(s)	129, 1164
Fnu4HI	GCNGC	4 cut(s)	103, 171, 840, 843
FokI	GGATG	8 cut(s)	127, 291, 375, 683, 711, 1068, 1125, 1186
Fsp4HI	GCNGC	4 cut(s)	103, 171, 840, 843
FspBI	CTAG	2 cut(s)	120, 161
GlaI	GCGC	2 cut(s)	642, 891
GluI	GCNGC	4 cut(s)	103, 171, 840, 843
GsuI	CTGGAG	1 cut(s)	738
HaeIII	GGCC	1 cut(s)	391
HapII	CCGG	1 cut(s)	9
HhaI	GCGC	2 cut(s)	643, 892
Hin1II	CATG	6 cut(s)	81, 388, 657, 684, 709, 1090
Hin6I	GCGC	2 cut(s)	641, 890
HinP1I	GCGC	2 cut(s)	641, 890
HinfI	GANTC	7 cut(s)	154, 213, 647, 751, 768, 932, 1011
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	5 cut(s)	130, 809, 1098, 1141, 1165
Hpy188I	TCNGA	2 cut(s)	44, 138
Hpy188III	TCNNGA	8 cut(s)	67, 176, 217, 342, 360, 706, 910, 971
Hpy8I	GTNNAC	5 cut(s)	130, 809, 1098, 1141, 1165
Hpy99I	CGWCG	2 cut(s)	257, 328
HpyAV	CCTTC	2 cut(s)	421, 432
HpyCH4III	ACNGT	5 cut(s)	134, 224, 242, 257, 601
HpyCH4IV	ACGT	2 cut(s)	323, 1107
HpyCH4V	TGCA	4 cut(s)	105, 467, 551, 606
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 170, 896, 1037
HpySE526I	ACGT	2 cut(s)	323, 1107
Hsp92II	CATG	6 cut(s)	81, 388, 657, 684, 709, 1090
HspAI	GCGC	2 cut(s)	641, 890
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	3 cut(s)	74, 501, 967
LmnI	GCTCC	2 cut(s)	1037, 1189
Lsp1109I	GCAGC	4 cut(s)	89, 157, 851, 854
LweI	GCATC	4 cut(s)	48, 538, 548, 723
MaeI	CTAG	2 cut(s)	120, 161
MaeII	ACGT	2 cut(s)	323, 1107
MaeIII	GTNAC	2 cut(s)	205, 576
MalI	GATC	3 cut(s)	76, 503, 969
MboI	GATC	3 cut(s)	74, 501, 967
MboII	GAAGA	7 cut(s)	417, 642, 650, 986, 989, 998, 1218
MluCI	AATT	2 cut(s)	492, 947
MlyI	GAGTC	3 cut(s)	745, 762, 926
MmeI	TCCRAC	2 cut(s)	724, 1049
MnlI	CCTC	3 cut(s)	155, 704, 1197
MseI	TTAA	8 cut(s)	84, 197, 263, 375, 398, 482, 735, 951
MslI	CAYNNNNRTG	2 cut(s)	462, 1172
MspCI	CTTAAG	2 cut(s)	196, 262
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	112
Mva1269I	GAATGC	3 cut(s)	334, 355, 533
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	2 cut(s)	641, 911
MwoI	GCNNNNNNNGC	4 cut(s)	102, 170, 896, 1037
NdeI	CATATG	1 cut(s)	1000
NdeII	GATC	3 cut(s)	74, 501, 967
NlaIII	CATG	6 cut(s)	81, 388, 657, 684, 709, 1090
NlaIV	GGNNCC	3 cut(s)	193, 250, 1185
NmuCI	GTSAC	1 cut(s)	205
NruI	TCGCGA	1 cut(s)	911
NspV	TTCGAA	1 cut(s)	802
PagI	TCATGA	1 cut(s)	705
PctI	GAATGC	3 cut(s)	334, 355, 533
PfeI	GAWTC	4 cut(s)	154, 213, 647, 1011
PflFI	GACNNNGTC	1 cut(s)	257
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	104, 172, 841, 844
PleI	GAGTC	3 cut(s)	745, 762, 926
PpsI	GAGTC	3 cut(s)	745, 762, 926
PsiI	TTATAA	1 cut(s)	677
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	3 cut(s)	193, 250, 1185
PspPI	GGNCC	1 cut(s)	249
PsyI	GACNNNGTC	1 cut(s)	257
RruI	TCGCGA	1 cut(s)	911
RsaI	GTAC	6 cut(s)	13, 322, 629, 638, 1046, 1123
RsaNI	GTAC	6 cut(s)	12, 321, 628, 637, 1045, 1122
RseI	CAYNNNNRTG	2 cut(s)	462, 1172
SaqAI	TTAA	8 cut(s)	84, 197, 263, 375, 398, 482, 735, 951
SatI	GCNGC	4 cut(s)	103, 171, 840, 843
Sau3AI	GATC	3 cut(s)	74, 501, 967
Sau96I	GGNCC	1 cut(s)	249
ScaI	AGTACT	1 cut(s)	1123
SchI	GAGTC	3 cut(s)	745, 762, 926
ScrFI	CCNGG	1 cut(s)	112
SfaNI	GCATC	4 cut(s)	48, 538, 548, 723
SfuI	TTCGAA	1 cut(s)	802
SinI	GGWCC	1 cut(s)	249
SmiMI	CAYNNNNRTG	2 cut(s)	462, 1172
SmlI	CTYRAG	2 cut(s)	196, 262
SmoI	CTYRAG	2 cut(s)	196, 262
Sse9I	AATT	2 cut(s)	492, 947
SsiI	CCGC	2 cut(s)	94, 1154
SspMI	CTAG	2 cut(s)	120, 161
StyD4I	CCNGG	1 cut(s)	110
TaaI	ACNGT	5 cut(s)	134, 224, 242, 257, 601
TaiI	ACGT	2 cut(s)	326, 1110
TaqI	TCGA	3 cut(s)	326, 802, 920
TaqII	GACCGA	1 cut(s)	266
TasI	AATT	2 cut(s)	492, 947
TatI	WGTACW	3 cut(s)	627, 1044, 1121
TfiI	GAWTC	4 cut(s)	154, 213, 647, 1011
Tru1I	TTAA	8 cut(s)	84, 197, 263, 375, 398, 482, 735, 951
Tru9I	TTAA	8 cut(s)	84, 197, 263, 375, 398, 482, 735, 951
TscAI	CASTG	1 cut(s)	819
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	4 cut(s)	102, 170, 839, 842
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	7 cut(s)	72, 327, 499, 582, 642, 1007, 1103
TspGWI	ACGGA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	819
Tth111I	GACNNNGTC	1 cut(s)	257
Vha464I	CTTAAG	2 cut(s)	196, 262
VpaK11BI	GGWCC	1 cut(s)	249
XmiI	GTMKAC	2 cut(s)	129, 1164
XspI	CTAG	2 cut(s)	120, 161
ZrmI	AGTACT	1 cut(s)	1123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.