MD02G1063900.v1.1

Serine incorporator

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
5139847 .. 5145371
5525 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1063900.v1.1.491

Sequence Viewer

Length: 1341 bp
ATGGAGGAGGGTGGATCAGCAGGAAACTATCTGAGGAGTGGACTCAAAGTCAAGGTTGATTCATGGTTCAGCCAATTTCGCAATGGTTCGAATCCATGGATGGCCAGATATGTCTACGGATTCATGTTTTTGATAGCAAATCTTATGGCATGGGGTGTCCGGGATTACGGAAGAAATGTGTTGACGGAGATGGAGAGATTAAAAGGATGTCATGGTGTGAAGGATTGTTTGGGTGCAGAAGGAGTCCTACGTGTAAGCTTGGGTTGCTTTTTGTTTTATATCACAATGTTTCTTTCCACTGCTGGCACATCGAAGTTGAATGAACCCAGAGATTCGTGGCAATCCGGATGGTGGTCTGCCAAGATTGTCATGTGGATTTCCTTCATCATCATTCCCTTTCTGCTTCCTGCCACAATCATTCAGCTATATGGAGAGATTGCGCATTTTGGTGCCGGGGTTTTTCTCTTGATTCAGCTAATAAGCATAATCAGTTTCATTACGTGGCTGAACGATTGTTGTCAGTCTACCAAATCAGAAAGATGCCGGATTCATGTGATGTTACTTGCAACTGCTGCATATGTTGTATGCTTAGTGGGGATCATATTGATGTACATATGGTATGCACCGGAACCAACTTGCCTCCTCAACATCTTTTTCATAACCTGGACATTAGTACTCCTACAACTCATGACCAGTGTCTCTCTCCACCCGAAAGTGAATGCTGGCATCTTGACTCCGGGTCTCATGGGCCTTTATATAGTATTCATCTGCTGGTTTGCTATTAGAAGTGAGCCAGCGGGGACAAGCTGCAACAAGAAGGCAGATGATTCAACCAAAACAGATTGGCTCACCATCATAAGCTTTGTTATAGCCGTGCTTGCAATGGTTATCGCAACATTCTCAACCGGCATAGATTCCAAATGCTTTCAGTTCAGGAAGGACGAGACTGAATCCGAGGATGATGTTCCATATGGTTATGGATTCTTCCACTTTGTTTTTGCCACGGGAGCAATGTACTTTGGAATGCTGCTGATTGGTTGGAATACTCATCAATCCATGAGAAGGTTTACGATTGATGTGGGATGGGCCAGCACTTGGGTGAGGATTGTGAACGAGTGGATCGCGGTCTGCGTGTATTGTGATATGGATGCTAGTTGCTCCAATCATATGGGAAAGCATATAAACGGTGCAATCCGCTTAAGTTTATGTTTACATCTTGCCACATTCATCCGTTGTACATATGGGAGTGTCCAAGCCTCGCCCTCGAGGATCAAAACTCTTTGCATACTCCGAGAAGAGCCTCCTCAGGCCTCCATGGGCAGCAGCGCTGCTGGCACTTAA

Protein Analysis

447

Amino Acids

49.98

Weight (kDa)

8.07

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 24 - 314 8.4e-54 Serine incorporator (Serinc)
Serinc PF03348 313 - 380 7.8e-14 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1264
Acc16I TGCGCA 1 cut(s) 441
AccB1I GGYRCC 1 cut(s) 449
AccB7I CCANNNNNTGG 1 cut(s) 1095
AccI GTMKAC 2 cut(s) 114, 524
AccII CGCG 1 cut(s) 1124
AccIII TCCGGA 1 cut(s) 344
AciI CCGC 3 cut(s) 797, 1124, 1195
AclWI GGATC 4 cut(s) 22, 605, 1127, 1277
AcoI YGGCCR 1 cut(s) 102
AfaI GTAC 4 cut(s) 611, 675, 1016, 1237
AfeI AGCGCT 1 cut(s) 1327
AfiI CCNNNNNNNGG 3 cut(s) 351, 1062, 1095
AflII CTTAAG 1 cut(s) 1198
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 2 cut(s) 319, 831
AhdI GACNNNNNGTC 2 cut(s) 47, 738
AjnI CCWGG 1 cut(s) 662
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AleI CACNNNNGTG 1 cut(s) 1097
AluBI AGCT 5 cut(s) 258, 424, 475, 807, 861
AluI AGCT 5 cut(s) 258, 424, 475, 807, 861
Alw26I GTCTC 3 cut(s) 703, 746, 938
AlwI GGATC 4 cut(s) 22, 605, 1127, 1277
Ama87I CYCGRG 1 cut(s) 1264
Aor13HI TCCGGA 1 cut(s) 344
Aor51HI AGCGCT 1 cut(s) 1327
AoxI GGCC 4 cut(s) 102, 748, 1086, 1308
ApeKI GCWGC 6 cut(s) 572, 807, 1027, 1320, 1323, 1328
AspLEI GCGC 2 cut(s) 442, 1328
AspS9I GGNCC 2 cut(s) 748, 1086
AsuC2I CCSGG 3 cut(s) 161, 454, 738
AsuHPI GGTGA 2 cut(s) 841, 1111
AsuII TTCGAA 1 cut(s) 89
AvaI CYCGRG 1 cut(s) 1264
AxyI CCTNAGG 1 cut(s) 1305
BalI TGGCCA 1 cut(s) 104
BanI GGYRCC 1 cut(s) 449
BarI GAAGNNNNNNTAC 2 cut(s) 231, 263
BbvI GCAGC 6 cut(s) 559, 794, 1014, 1315, 1332, 1335
BccI CCATC 5 cut(s) 94, 184, 342, 860, 1077
BceAI ACGGC 1 cut(s) 857
BciT130I CCWGG 1 cut(s) 664
BcnI CCSGG 3 cut(s) 161, 454, 738
BcoDI GTCTC 3 cut(s) 703, 746, 938
BfaI CTAG 1 cut(s) 1152
BfoI RGCGCY 1 cut(s) 1329
BfrI CTTAAG 1 cut(s) 1198
BisI GCNGC 6 cut(s) 573, 808, 1028, 1321, 1324, 1329
BlsI GCNGC 6 cut(s) 574, 809, 1029, 1322, 1325, 1330
BmcAI AGTACT 1 cut(s) 675
Bme1390I CCNGG 4 cut(s) 161, 454, 664, 738
BmeRI GACNNNNNGTC 2 cut(s) 47, 738
BmeT110I CYCGRG 1 cut(s) 1264
BmgT120I GGNCC 2 cut(s) 748, 1086
BmiI GGNNCC 2 cut(s) 451, 630
BmrFI CCNGG 4 cut(s) 161, 454, 664, 738
BmsI GCATC 3 cut(s) 530, 735, 1138
BoxI GACNNNNGTC 1 cut(s) 695
Bpu14I TTCGAA 1 cut(s) 89
BpuMI CCSGG 3 cut(s) 161, 454, 738
BsaAI YACGTR 2 cut(s) 251, 501
BsaI GGTCTC 1 cut(s) 746
BsaJI CCNNGG 5 cut(s) 95, 453, 954, 1002, 1314
BsaWI WCCGGW 2 cut(s) 344, 625
Bsc4I CCNNNNNNNGG 3 cut(s) 351, 1062, 1095
Bse118I RCCGGY 1 cut(s) 905
Bse1I ACTGG 1 cut(s) 693
Bse21I CCTNAGG 1 cut(s) 1305
Bse3DI GCAATG 3 cut(s) 88, 888, 1017
BseAI TCCGGA 1 cut(s) 344
BseBI CCWGG 1 cut(s) 664
BseDI CCNNGG 5 cut(s) 95, 453, 954, 1002, 1314
BseGI GGATG 7 cut(s) 105, 212, 353, 964, 1088, 1153, 1227
BseLI CCNNNNNNNGG 3 cut(s) 351, 1062, 1095
BseMI GCAATG 3 cut(s) 88, 888, 1017
BseMII CTCAG 2 cut(s) 23, 1319
BseNI ACTGG 1 cut(s) 693
BseRI GAGGAG 4 cut(s) 20, 49, 632, 1293
BseXI GCAGC 6 cut(s) 559, 794, 1014, 1315, 1332, 1335
BsgI GTGCAG 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 1124
BshFI GGCC 4 cut(s) 104, 750, 1088, 1310
BshNI GGYRCC 1 cut(s) 449
BsiHKCI CYCGRG 1 cut(s) 1264
BsiSI CCGG 7 cut(s) 160, 345, 453, 544, 626, 737, 906
BslFI GGGAC 1 cut(s) 814
BslI CCNNNNNNNGG 3 cut(s) 351, 1062, 1095
BsmAI GTCTC 3 cut(s) 703, 746, 938
BsmFI GGGAC 1 cut(s) 814
BsmI GAATGC 2 cut(s) 724, 1029
BsnI GGCC 4 cut(s) 104, 750, 1088, 1310
Bso31I GGTCTC 1 cut(s) 746
BsoBI CYCGRG 1 cut(s) 1264
Bsp119I TTCGAA 1 cut(s) 89
Bsp13I TCCGGA 1 cut(s) 344
Bsp1407I TGTACA 2 cut(s) 609, 1235
Bsp143I GATC 4 cut(s) 14, 597, 1119, 1269
Bsp19I CCATGG 2 cut(s) 95, 1314
BspACI CCGC 3 cut(s) 797, 1124, 1195
BspANI GGCC 4 cut(s) 104, 750, 1088, 1310
BspCNI CTCAG 2 cut(s) 24, 1318
BspEI TCCGGA 1 cut(s) 344
BspFNI CGCG 1 cut(s) 1124
BspHI TCATGA 1 cut(s) 687
BspLI GGNNCC 2 cut(s) 451, 630
BspPI GGATC 4 cut(s) 22, 605, 1127, 1277
BspQI GCTCTTC 1 cut(s) 1290
BspT104I TTCGAA 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 449
BspTI CTTAAG 1 cut(s) 1198
BspTNI GGTCTC 1 cut(s) 746
BsrDI GCAATG 3 cut(s) 88, 888, 1017
BsrFI RCCGGY 1 cut(s) 905
BsrGI TGTACA 2 cut(s) 609, 1235
BsrI ACTGG 1 cut(s) 693
BssAI RCCGGY 1 cut(s) 905
BssECI CCNNGG 5 cut(s) 95, 453, 954, 1002, 1314
BssMI GATC 4 cut(s) 14, 597, 1119, 1269
BssT1I CCWWGG 2 cut(s) 95, 1314
Bst2UI CCWGG 1 cut(s) 664
Bst4CI ACNGT 1 cut(s) 1187
Bst6I CTCTTC 1 cut(s) 1290
BstAFI CTTAAG 1 cut(s) 1198
BstAPI GCANNNNNTGC 1 cut(s) 572
BstAUI TGTACA 2 cut(s) 609, 1235
BstBAI YACGTR 2 cut(s) 251, 501
BstBI TTCGAA 1 cut(s) 89
BstC8I GCNNGC 6 cut(s) 304, 724, 795, 879, 1090, 1333
BstDEI CTNAG 3 cut(s) 32, 589, 1305
BstDSI CCRYGG 3 cut(s) 95, 1002, 1314
BstF5I GGATG 7 cut(s) 105, 212, 353, 964, 1088, 1153, 1227
BstFNI CGCG 1 cut(s) 1124
BstH2I RGCGCY 1 cut(s) 1329
BstHHI GCGC 2 cut(s) 442, 1328
BstKTI GATC 4 cut(s) 17, 600, 1122, 1272
BstMAI GTCTC 3 cut(s) 703, 746, 938
BstMBI GATC 4 cut(s) 14, 597, 1119, 1269
BstMWI GCNNNNNNNGC 6 cut(s) 78, 264, 572, 878, 1007, 1332
BstNI CCWGG 1 cut(s) 664
BstPAI GACNNNNGTC 1 cut(s) 695
BstSCI CCNGG 4 cut(s) 159, 452, 662, 736
BstUI CGCG 1 cut(s) 1124
BstV1I GCAGC 6 cut(s) 559, 794, 1014, 1315, 1332, 1335
BstXI CCANNNNNNTGG 1 cut(s) 1168
Bsu36I CCTNAGG 1 cut(s) 1305
BsuRI GGCC 4 cut(s) 104, 750, 1088, 1310
BtgI CCRYGG 3 cut(s) 95, 1002, 1314
BtsCI GGATG 7 cut(s) 105, 212, 353, 964, 1088, 1153, 1227
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 2 cut(s) 297, 700
Cac8I GCNNGC 6 cut(s) 304, 724, 795, 879, 1090, 1333
CciI TCATGA 1 cut(s) 687
CfoI GCGC 2 cut(s) 442, 1328
Cfr10I RCCGGY 1 cut(s) 905
Cfr13I GGNCC 2 cut(s) 748, 1086
Csp6I GTAC 4 cut(s) 610, 674, 1015, 1236
CviQI GTAC 4 cut(s) 610, 674, 1015, 1236
DdeI CTNAG 3 cut(s) 32, 589, 1305
DpnI GATC 4 cut(s) 16, 599, 1121, 1271
DpnII GATC 4 cut(s) 14, 597, 1119, 1269
DriI GACNNNNNGTC 2 cut(s) 47, 738
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 1290
Eam1105I GACNNNNNGTC 2 cut(s) 47, 738
EarI CTCTTC 1 cut(s) 1290
Eco130I CCWWGG 2 cut(s) 95, 1314
Eco147I AGGCCT 1 cut(s) 1310
Eco31I GGTCTC 1 cut(s) 746
Eco47III AGCGCT 1 cut(s) 1327
Eco81I CCTNAGG 1 cut(s) 1305
Eco88I CYCGRG 1 cut(s) 1264
EcoRII CCWGG 1 cut(s) 662
EcoT14I CCWWGG 2 cut(s) 95, 1314
ErhI CCWWGG 2 cut(s) 95, 1314
FaqI GGGAC 1 cut(s) 814
FauI CCCGC 1 cut(s) 790
FauNDI CATATG 5 cut(s) 577, 614, 970, 1167, 1240
FblI GTMKAC 2 cut(s) 114, 524
Fnu4HI GCNGC 6 cut(s) 573, 808, 1028, 1321, 1324, 1329
FokI GGATG 7 cut(s) 112, 219, 360, 971, 1095, 1160, 1214
Fsp4HI GCNGC 6 cut(s) 573, 808, 1028, 1321, 1324, 1329
FspBI CTAG 1 cut(s) 1152
FspI TGCGCA 1 cut(s) 441
GlaI GCGC 2 cut(s) 441, 1327
GluI GCNGC 6 cut(s) 573, 808, 1028, 1321, 1324, 1329
HaeII RGCGCY 1 cut(s) 1329
HaeIII GGCC 4 cut(s) 104, 750, 1088, 1310
HapII CCGG 7 cut(s) 160, 345, 453, 544, 626, 737, 906
HhaI GCGC 2 cut(s) 442, 1328
Hin6I GCGC 2 cut(s) 440, 1326
HinP1I GCGC 2 cut(s) 440, 1326
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HindIII AAGCTT 2 cut(s) 256, 859
HpaII CCGG 7 cut(s) 160, 345, 453, 544, 626, 737, 906
HphI GGTGA 2 cut(s) 841, 1111
Hpy166II GTNNAC 7 cut(s) 41, 115, 183, 525, 1068, 1111, 1211
Hpy188I TCNGA 4 cut(s) 33, 535, 955, 1292
Hpy188III TCNNGA 5 cut(s) 345, 466, 688, 730, 934
Hpy8I GTNNAC 7 cut(s) 41, 115, 183, 525, 1068, 1111, 1211
HpyAV CCTTC 6 cut(s) 214, 233, 391, 811, 931, 1056
HpyCH4III ACNGT 1 cut(s) 1187
HpyCH4IV ACGT 2 cut(s) 250, 500
HpyCH4V TGCA 8 cut(s) 236, 566, 575, 623, 810, 881, 1190, 1284
HpyF10VI GCNNNNNNNGC 6 cut(s) 78, 264, 572, 878, 1007, 1332
HpyF3I CTNAG 3 cut(s) 32, 589, 1305
HpySE526I ACGT 2 cut(s) 250, 500
HspAI GCGC 2 cut(s) 440, 1326
Kpn2I TCCGGA 1 cut(s) 344
Kzo9I GATC 4 cut(s) 14, 597, 1119, 1269
LguI GCTCTTC 1 cut(s) 1290
LmnI GCTCC 2 cut(s) 1007, 1163
Lsp1109I GCAGC 6 cut(s) 559, 794, 1014, 1315, 1332, 1335
LweI GCATC 3 cut(s) 530, 735, 1138
MaeI CTAG 1 cut(s) 1152
MaeII ACGT 2 cut(s) 250, 500
MaeIII GTNAC 1 cut(s) 558
MalI GATC 4 cut(s) 16, 599, 1121, 1271
MboI GATC 4 cut(s) 14, 597, 1119, 1269
MboII GAAGA 3 cut(s) 183, 976, 1307
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 1 cut(s) 74
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 3 cut(s) 36, 252, 727
MmeI TCCRAC 1 cut(s) 1019
Mox20I TGGCCA 1 cut(s) 104
MroI TCCGGA 1 cut(s) 344
MscI TGGCCA 1 cut(s) 104
MseI TTAA 3 cut(s) 200, 1199, 1339
MslI CAYNNNNRTG 3 cut(s) 447, 605, 1097
Msp20I TGGCCA 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 797
MspCI CTTAAG 1 cut(s) 1198
MspI CCGG 7 cut(s) 160, 345, 453, 544, 626, 737, 906
MspR9I CCNGG 4 cut(s) 161, 454, 664, 738
Mva1269I GAATGC 2 cut(s) 724, 1029
MvaI CCWGG 1 cut(s) 664
MvnI CGCG 1 cut(s) 1124
MwoI GCNNNNNNNGC 6 cut(s) 78, 264, 572, 878, 1007, 1332
NciI CCSGG 3 cut(s) 161, 454, 738
NcoI CCATGG 2 cut(s) 95, 1314
NdeI CATATG 5 cut(s) 577, 614, 970, 1167, 1240
NdeII GATC 4 cut(s) 14, 597, 1119, 1269
NlaIV GGNNCC 2 cut(s) 451, 630
NsbI TGCGCA 1 cut(s) 441
NspV TTCGAA 1 cut(s) 89
OliI CACNNNNGTG 1 cut(s) 1097
PaeR7I CTCGAG 1 cut(s) 1264
PagI TCATGA 1 cut(s) 687
PceI AGGCCT 1 cut(s) 1310
PciSI GCTCTTC 1 cut(s) 1290
PcsI WCGNNNNNNNCGW 1 cut(s) 1128
PctI GAATGC 2 cut(s) 724, 1029
PflMI CCANNNNNTGG 1 cut(s) 1095
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 6 cut(s) 574, 809, 1029, 1322, 1325, 1330
PleI GAGTC 3 cut(s) 36, 251, 727
PpsI GAGTC 3 cut(s) 36, 251, 727
Ppu21I YACGTR 2 cut(s) 251, 501
PshAI GACNNNNGTC 1 cut(s) 695
Psp6I CCWGG 1 cut(s) 662
PspGI CCWGG 1 cut(s) 662
PspN4I GGNNCC 2 cut(s) 451, 630
PspPI GGNCC 2 cut(s) 748, 1086
PspXI VCTCGAGB 1 cut(s) 1264
RsaI GTAC 4 cut(s) 611, 675, 1016, 1237
RsaNI GTAC 4 cut(s) 610, 674, 1015, 1236
RseI CAYNNNNRTG 3 cut(s) 447, 605, 1097
SapI GCTCTTC 1 cut(s) 1290
SaqAI TTAA 3 cut(s) 200, 1199, 1339
SatI GCNGC 6 cut(s) 573, 808, 1028, 1321, 1324, 1329
Sau3AI GATC 4 cut(s) 14, 597, 1119, 1269
Sau96I GGNCC 2 cut(s) 748, 1086
ScaI AGTACT 1 cut(s) 675
SchI GAGTC 3 cut(s) 36, 252, 727
ScrFI CCNGG 4 cut(s) 161, 454, 664, 738
SfaNI GCATC 3 cut(s) 530, 735, 1138
Sfr274I CTCGAG 1 cut(s) 1264
SfuI TTCGAA 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 1264
SmiMI CAYNNNNRTG 3 cut(s) 447, 605, 1097
SmlI CTYRAG 2 cut(s) 1198, 1264
SmoI CTYRAG 2 cut(s) 1198, 1264
Sse9I AATT 1 cut(s) 74
SseBI AGGCCT 1 cut(s) 1310
SsiI CCGC 3 cut(s) 797, 1124, 1195
SspMI CTAG 1 cut(s) 1152
StuI AGGCCT 1 cut(s) 1310
StyD4I CCNGG 4 cut(s) 159, 452, 662, 736
StyI CCWWGG 2 cut(s) 95, 1314
TaaI ACNGT 1 cut(s) 1187
TaiI ACGT 2 cut(s) 253, 503
TaqI TCGA 3 cut(s) 89, 311, 1265
TasI AATT 1 cut(s) 74
TatI WGTACW 4 cut(s) 609, 673, 1014, 1235
Tru1I TTAA 3 cut(s) 200, 1199, 1339
Tru9I TTAA 3 cut(s) 200, 1199, 1339
TscAI CASTG 2 cut(s) 304, 700
TseI GCWGC 6 cut(s) 572, 807, 1027, 1320, 1323, 1328
TspDTI ATGAA 9 cut(s) 51, 112, 336, 373, 484, 539, 646, 754, 1216
TspGWI ACGGA 4 cut(s) 132, 183, 200, 1220
TspRI CASTG 2 cut(s) 304, 700
Van91I CCANNNNNTGG 1 cut(s) 1095
Vha464I CTTAAG 1 cut(s) 1198
XcmI CCANNNNNNNNNTGG 1 cut(s) 80
XhoI CTCGAG 1 cut(s) 1264
XmiI GTMKAC 2 cut(s) 114, 524
XspI CTAG 1 cut(s) 1152
ZrmI AGTACT 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.