Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001865

Physical Location & Seq

Genomic Coordinates Forward (+)

963925 .. 972414

Gene Structure 8490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0011000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3561 bp

ATGGCCTTGTTGCGCAAATTGTTCTATCGCAAACCGCCGGATGGACTGTTCGAGATCTGTGAGCGAGTATACGTTTTTGATTGCTGCTTCACTACCGATGCTTGGAAGGAGGAAAACTATAAGGTTTACATAGCTGGGGCAGTTGGTCAACTACAAGAGCACTTACCTGATGCTTCATTCTTGGTCTTCAATTTTCATGATGGTATGGCACAGAGCCAGATGGCCGGCATCTTGTCTGAGTATGATATGACCATAATGGATTACCCTCGGCACTTTGAAGGTTGTCCTGTCCTGACGATGGAGTTGATCCATCACTTTCTTAGATCAAGTGAAAGCTGGTTAGGACTTGGGCACAACAACGTGCTTTTGATGCATTGTGAGCGTGGAGGTTGGCCTGTTTTGGCCTTCATGCTGGCTGCACTCTTGATTTACAGGAAGCATTATACTGGTGAGCATAGGACGTTGGACATGGTTTACAGGCAGGCTCCCCTTGAGCTTTTGCATTTGCTATCAGCCTTAAATCCAATTCCTTCTCAACTTAGGTATCTACAGTACGTATCGAGGAGGAATGTAGCCTTAGAATGGCCTCCTCTGGATCGAGCACTTACCTTGGACTGCGTCATTTTTAGATTTATTCCTAATTTTGATGGGCAAGGAGGTTGCCGTCCTATATTTCGCATATATGGGCAAGACCCTTTTCTTGTTACTGATCGAACTGCCAAAGTCTTATACTCGACTCCAAAACGAAGCAAAACCATCCGGCCTTACAAGCAGGCAGAATGTGAACTGGTTAAAATTGACATTAATTGCCATATTCAAGGTGATGTTGTGCTTGAATGCATTAGCTTGCATAATGATATGGAACGTGAACAGATGATGTTCCGCGTCATGTTCAATACAGCTTTTATTAGGTCTAACATTTTGATGCTCAACCGTGATGAAATAGACATGTTGTGGGATGTAAAGGAACAATTTCCAAAGGACTTTAGAGTAGAGATCCTTTTCTCAGAGATGGATGCTGTCTCATCTATTATTCTTGGTGGTATGTCATGCTTTGAGGATAAGGAGGGACTTCCGATGGAAGCATTTGATCAAGTTCAAGAGATCTTTAGTTATGTTGATTGGTTAGATCCCAAAACAGATGCTGCATTGAATGTTCTTCAACAGTTGGGTGCATCGAATATCACCCATGAAAAGTTGGATACTGATTCTTCCCAGGAATCAATTCCTAAACAGATGCCAAATATAAAGACATCCTTGAATTTGGAAAACGATTCTAAGATTCTAGCCTCCTCGGAGGTGCAGTCAGTGGCCTCACCAGATACAAGTGTCAGTAAACAGGAAGCTAAACCTCAAGACGTTCAGCGACCCAATCAATGTGATTCAGTGAGCCAGCACATGCCACAACCTCCTCAGTCAGAGCCAATGAAGGCATTTGCTCAAGTTCAGGAGATCATTAGCCAAGTTCCCTCAACTACACAATCTCCAGATAGCACTGTGACTAAACCTGAAGCCAAACAAGACATTCATACTGCACAGCAGCCACCTAACCAATCTGATTCAGTGTCCCAGCAGAGGCCCCAACCTCCTATGTTAACGCCAATGGAAGCATTCATTCAAGTTCAAGATATCTTCAGCCGTGTAGCCTCACCTAAAAAATCTCAAGATACCACTGTGAATAAACAGGAAGCTATACCTCAAGATACTTATACTGCATCTCAGCCACATATTCCCCAACCTTCTAAGTCAATCCCAGTTTCCTCTGGAGCCCAAAGTGTTTCAGTTGCACCACCAACACCTCCACCAGCTTCTCCATTGCAACCTACTTCTGCTATGACAACTCCTCCTCCTCCTCCATCACCTCCACTTCAACCTCAACATGCATCACTTCCAAAGCCCAAAGATGCACTTTCCAAAGATACTGAAACCCAACCATCTAGCCCTGGGAGGATACCCCCCTCCTCTTCTCCAGTTTCTAAAGTTACTTCATCATCTCAGCCTCCTCCACCTCCTCCTCCTCCTTCAACTCCTCCTCTGAAAGAGAACCTTGCTGCTAGTTCTAGACCTCCCCCACCTCCACCACCTCCTCTTCACTCAGGGAAAGCTGGAAGCACTGCAAATGCATCTCCAGTTCCAGTGCCACCAGCACCACCTAGTGCACCCCCTCCTCCTCCTCCTCCACTCTCAGGGAAATCTGGAGGTACCCCTGTTTCTTCTCCTAGTGCTCCCCCTCCTCCTCCGGCACCCTTTGCTAAAGGAGGTTCCAAGCCTGGAACTCCTCCACCACCACCAGTTGGTTCCGCCAGTAATGCAAAAGGCCGTCTATCACGTACCATAAATTCTAAGGATAATCAAAAGAAACTGAAGCCATTACACTGGTTGAAACTATCAAGAGCAGTTCAGGGAAGTTTATGGGCTGAGGCCGAAAAATCCAGTGAAGACACGAAGGCTCCAGAGATTGACATGTCAGAGCTTGAGAATCTTTTCGCTGCGGCAGTTCCAACTTCGGATCAGGGCAAGAAAGGAACTACACCAGGTCCAGTTGCCCCTAAATCTGACAAAGTGCAATTGATTGACCACAGACGGGCGTACAATTGTGAAATCATGCTTTCAAAGGTGAAGGTTCCCTTGCATGAGTTAACGAATTCGGTGCTTGCCCTGGAAAATACAGCATTAGATCCTGACCAGGTTGAGAACTTAATAAAGTTTTGTCCAACTAAAGAGGAGATGGAGCTACTTAAGGGATATAAGGGAGAGAAGGAGAAGTTAGGAAAATGTGAACAGTTCTTGTTAGAGTTAATGAAAGTACCTCGAGTGGAATCTAAGCTGAGAGTTTTTTCGTTCAAAATACAATTCTCTTCCCAGGTTTCTGACCTTAGGAAAAGCCTGAATGTTGTAAACTCTGCAGCAGAAGAGATCAGAAATTCAGGCAAATTGAAAAGAGTTATGCAGACAATTCTTTCCTTAGGAAATGCTTTGAACCAGGGGACAGCTCGGGGCGCGGCTATCGGATTTAGATTGGATAGTCTTCTTAAACTTATTGACACTCGTGCAAGGAACAACAAGATGACTCTCATGCATTATCTTTGTAAGGTTCTTGCTGACCAACTACCAGAGGTTCTAGATTTCTCAAAGGACCTATCCAGCTTAGAGCCTGCATCAAAGATACAATTGAAATTTTTGGCAGAGGAAATGCAAGCAGTAAGTAAAGGACTGGAGAAAGTTGTACAGGAATTATCTACTTCTGAAAATGACGGTCCTATATCAAAAAATTTCCGTAAGACCCTAAAGGAGTTCCTCCGTTCTGCTGAAGCCGAGGGTAGAAATGTGGATGCATTGATTCTTTATTTTGGAGAAGATCCTGCAAAATGCCCGTTTGAACAAGTTATTTCAACCTTACTCAACTTTGTCAGAATGTTCATCAAGTCCCATGACGAAAATTGCAAGCAAAGTGAGCTTGAAATGAAAAAAGCAGCAGAAAGTGAGAAGGTCAAGATGGGTGCTTCCAATCAGTCAGAACGGGTGTTACGTACTCCAATCCATAATAGCAATGTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015194 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015825 GO:0015849 GO:0022857 GO:0022889 GO:0032329 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Serinc

Protein Analysis

1186

Amino Acids

131.21

Weight (kDa)

6.8

Isoelectric Point (pI)

57.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTEN_C2	PF10409	199 - 337	4e-41	C2 domain of PTEN tumour-suppressor protein
FH2	PF02181	782 - 1140	1.4e-110	Formin Homology 2 Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24460 AT3G24460 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345
fragaria_vesca	FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181
malus_domestica	MD02G1063500.v1.1 MD02G1063900.v1.1 MD15G1188500.v1.1
prunus_persica	Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1
pyrus_communis	pycom02g04240 pycom02g04260 pycom15g16900
rosa_chinensis	RchiOBHm_Chr2g0090921
rosa_laevigata	RLG00000016155
rosa_roxburghii	Rroxscaffold_2G00150750 Rroxscaffold_6G00414260
rosa_rugosa	Rorug02G0010900 Rorug02G0011000 Rorug02G0011000 Rorug02G0011000 Rorug02G0011100 Rorug02G0011100
rosa_samantha	Rh2AG057200 Rh2BG055700 Rh2CG058000 Rh2DG056600
rosa_wichuraiana	Rw2G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	14
Acc65I	GGTACC	1 cut(s)	2201
AccB1I	GGYRCC	2 cut(s)	2201, 2242
AccB7I	CCANNNNNTGG	1 cut(s)	2294
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	2 cut(s)	885, 3002
AciI	CCGC	5 cut(s)	35, 883, 2301, 2492, 3002
AclWI	GGATC	7 cut(s)	301, 603, 991, 1124, 2517, 2672, 3353
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	6 cut(s)	1261, 2338, 2644, 2923, 3176, 3271
AcuI	CTGAAG	4 cut(s)	1530, 1618, 2384, 3330
AdeI	CACNNNGTG	1 cut(s)	2156
AfaI	GTAC	7 cut(s)	554, 2203, 2332, 2591, 2808, 3228, 3532
AfiI	CCNNNNNNNGG	8 cut(s)	41, 102, 298, 582, 1575, 2186, 2294, 2584
AflII	CTTAAG	1 cut(s)	2738
AflIII	ACRYGT	2 cut(s)	948, 2463
AjnI	CCWGG	8 cut(s)	1215, 1942, 2269, 2533, 2658, 2685, 2862, 2982
AloI	GAACNNNNNNTCC	2 cut(s)	32, 64
Alw21I	GWGCWC	4 cut(s)	162, 604, 2161, 2227
Alw26I	GTCTC	1 cut(s)	1027
Alw44I	GTGCAC	1 cut(s)	2157
AlwI	GGATC	7 cut(s)	301, 603, 991, 1124, 2517, 2672, 3353
AlwNI	CAGNNNCTG	1 cut(s)	1145
Ama87I	CYCGRG	2 cut(s)	2811, 2994
ApaLI	GTGCAC	1 cut(s)	2157
ApeKI	GCWGC	8 cut(s)	84, 416, 1145, 1540, 2051, 2489, 2906, 3473
ApoI	RAATTY	6 cut(s)	1261, 2338, 2644, 2923, 3176, 3271
AseI	ATTAAT	1 cut(s)	804
Asp700I	GAANNNNTTC	3 cut(s)	972, 1224, 2483
Asp718I	GGTACC	1 cut(s)	2201
AspLEI	GCGC	2 cut(s)	15, 3002
AspS9I	GGNCC	4 cut(s)	1578, 2537, 3136, 3257
AsuHPI	GGTGA	7 cut(s)	461, 833, 1177, 1308, 1641, 1851, 2629
AvaI	CYCGRG	2 cut(s)	2811, 2994
AvaII	GGWCC	3 cut(s)	2537, 3136, 3257
AxyI	CCTNAGG	2 cut(s)	2876, 2965
BaeGI	GKGCMC	2 cut(s)	354, 2161
BaeI	ACNNNNGTAYC	8 cut(s)	527, 560, 1314, 1347, 1659, 1692, 2193, 2226
BanI	GGYRCC	2 cut(s)	2201, 2242
BanII	GRGCYC	1 cut(s)	1771
BauI	CACGAG	1 cut(s)	3048
BbsI	GAAGAC	3 cut(s)	178, 2445, 3020
Bbv12I	GWGCWC	4 cut(s)	162, 604, 2161, 2227
BbvCI	CCTCAGC	1 cut(s)	2418
BbvI	GCAGC	8 cut(s)	71, 403, 1132, 1552, 2038, 2476, 2918, 3485
BceAI	ACGGC	3 cut(s)	648, 1623, 2304
BcgI	CGANNNNNNTGC	2 cut(s)	2632, 2666
BciT130I	CCWGG	8 cut(s)	1217, 1944, 2271, 2535, 2660, 2687, 2864, 2984
BciVI	GTATCC	2 cut(s)	1195, 1944
BclI	TGATCA	1 cut(s)	1090
BcoDI	GTCTC	1 cut(s)	1027
BfaI	CTAG	7 cut(s)	1286, 1938, 2055, 2061, 2154, 2220, 3122
BfmI	CTRYAG	2 cut(s)	548, 2904
BfrI	CTTAAG	1 cut(s)	2738
BfuI	GTATCC	2 cut(s)	1195, 1944
BglII	AGATCT	2 cut(s)	54, 1104
Bme1390I	CCNGG	8 cut(s)	1217, 1944, 2271, 2535, 2660, 2687, 2864, 2984
Bme18I	GGWCC	3 cut(s)	2537, 3136, 3257
BmeT110I	CYCGRG	2 cut(s)	2811, 2994
BmgT120I	GGNCC	4 cut(s)	1578, 2537, 3136, 3257
BmiI	GGNNCC	9 cut(s)	486, 1580, 1768, 2203, 2244, 2263, 2299, 2451, 2625
BmrFI	CCNGG	8 cut(s)	1217, 1944, 2271, 2535, 2660, 2687, 2864, 2984
BmrI	ACTGGG	1 cut(s)	1748
BmuI	ACTGGG	1 cut(s)	1748
BpiI	GAAGAC	3 cut(s)	178, 2445, 3020
BpmI	CTGGAG	7 cut(s)	1470, 1785, 1953, 2112, 2217, 2436, 3236
Bpu10I	CCTNAGC	1 cut(s)	2418
BpuEI	CTTGAG	6 cut(s)	512, 1338, 1425, 1647, 1683, 2495
BsaAI	YACGTR	3 cut(s)	556, 2330, 3530
Bsc4I	CCNNNNNNNGG	8 cut(s)	41, 102, 298, 582, 1575, 2186, 2294, 2584
Bse118I	RCCGGY	1 cut(s)	224
Bse21I	CCTNAGG	2 cut(s)	2876, 2965
Bse3DI	GCAATG	2 cut(s)	1814, 3556
BseBI	CCWGG	8 cut(s)	1217, 1944, 2271, 2535, 2660, 2687, 2864, 2984
BseGI	GGATG	6 cut(s)	46, 756, 964, 1021, 1253, 3337
BseLI	CCNNNNNNNGG	8 cut(s)	41, 102, 298, 582, 1575, 2186, 2294, 2584
BseMI	GCAATG	2 cut(s)	1814, 3556
BseMII	CTCAG	9 cut(s)	228, 1020, 1427, 1733, 2009, 2109, 2199, 2409, 2819
BseSI	GKGCMC	2 cut(s)	354, 2161
BseXI	GCAGC	8 cut(s)	71, 403, 1132, 1552, 2038, 2476, 2918, 3485
BseYI	CCCAGC	2 cut(s)	134, 1569
BsgI	GTGCAG	3 cut(s)	402, 1322, 1518
Bsh1236I	CGCG	2 cut(s)	885, 3002
BshNI	GGYRCC	2 cut(s)	2201, 2242
BsiHKAI	GWGCWC	4 cut(s)	162, 604, 2161, 2227
BsiHKCI	CYCGRG	2 cut(s)	2811, 2994
BsiSI	CCGG	4 cut(s)	38, 225, 760, 2240
BslFI	GGGAC	4 cut(s)	1083, 1552, 3001, 3412
BslI	CCNNNNNNNGG	8 cut(s)	41, 102, 298, 582, 1575, 2186, 2294, 2584
BsmAI	GTCTC	1 cut(s)	1027
BsmFI	GGGAC	4 cut(s)	1083, 1552, 3001, 3412
BsmI	GAATGC	2 cut(s)	842, 1610
BsoBI	CYCGRG	2 cut(s)	2811, 2994
Bsp1286I	GDGCHC	6 cut(s)	162, 354, 604, 1771, 2161, 2227
Bsp1407I	TGTACA	1 cut(s)	3226
BspACI	CCGC	5 cut(s)	35, 883, 2301, 2492, 3002
BspCNI	CTCAG	9 cut(s)	229, 1019, 1426, 1732, 2008, 2108, 2198, 2410, 2820
BspFNI	CGCG	2 cut(s)	885, 3002
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	9 cut(s)	486, 1580, 1768, 2203, 2244, 2263, 2299, 2451, 2625
BspMAI	CTGCAG	1 cut(s)	2908
BspPI	GGATC	7 cut(s)	301, 603, 991, 1124, 2517, 2672, 3353
BspT107I	GGYRCC	2 cut(s)	2201, 2242
BspTI	CTTAAG	1 cut(s)	2738
BsrDI	GCAATG	2 cut(s)	1814, 3556
BsrFI	RCCGGY	1 cut(s)	224
BsrGI	TGTACA	1 cut(s)	3226
BssAI	RCCGGY	1 cut(s)	224
BssNAI	GTATAC	1 cut(s)	70
BssSI	CACGAG	1 cut(s)	3048
BssT1I	CCWWGG	1 cut(s)	609
Bst1107I	GTATAC	1 cut(s)	70
Bst2BI	CACGAG	1 cut(s)	3048
Bst2UI	CCWGG	8 cut(s)	1217, 1944, 2271, 2535, 2660, 2687, 2864, 2984
Bst4CI	ACNGT	8 cut(s)	48, 552, 935, 1167, 1498, 1675, 2784, 3257
Bst6I	CTCTTC	4 cut(s)	1969, 2094, 2863, 2907
BstAFI	CTTAAG	1 cut(s)	2738
BstAPI	GCANNNNNTGC	1 cut(s)	2249
BstAUI	TGTACA	1 cut(s)	3226
BstBAI	YACGTR	3 cut(s)	556, 2330, 3530
BstF5I	GGATG	6 cut(s)	46, 756, 964, 1021, 1253, 3337
BstFNI	CGCG	2 cut(s)	885, 3002
BstHHI	GCGC	2 cut(s)	15, 3002
BstMAI	GTCTC	1 cut(s)	1027
BstMWI	GCNNNNNNNGC	7 cut(s)	370, 379, 769, 2249, 2309, 2999, 3454
BstNI	CCWGG	8 cut(s)	1217, 1944, 2271, 2535, 2660, 2687, 2864, 2984
BstNSI	RCATGY	4 cut(s)	952, 1402, 1883, 2467
BstSCI	CCNGG	8 cut(s)	1215, 1942, 2269, 2533, 2658, 2685, 2862, 2982
BstSFI	CTRYAG	2 cut(s)	548, 2904
BstSLI	GKGCMC	2 cut(s)	354, 2161
BstSNI	TACGTA	2 cut(s)	556, 3530
BstUI	CGCG	2 cut(s)	885, 3002
BstV1I	GCAGC	8 cut(s)	71, 403, 1132, 1552, 2038, 2476, 2918, 3485
BstV2I	GAAGAC	3 cut(s)	178, 2445, 3020
BstX2I	RGATCY	6 cut(s)	54, 996, 1104, 1129, 2677, 3358
BstXI	CCANNNNNNTGG	1 cut(s)	2376
BstYI	RGATCY	6 cut(s)	54, 996, 1104, 1129, 2677, 3358
BstZ17I	GTATAC	1 cut(s)	70
Bsu36I	CCTNAGG	2 cut(s)	2876, 2965
BsuI	GTATCC	2 cut(s)	1195, 1944
BtsCI	GGATG	6 cut(s)	46, 756, 964, 1021, 1253, 3337
BtsI	GCAGTG	1 cut(s)	2112
BtsIMutI	CAGTG	9 cut(s)	1314, 1392, 1494, 1569, 1671, 2112, 2142, 2374, 2440
CaiI	CAGNNNCTG	1 cut(s)	1145
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	2 cut(s)	15, 3002
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	4 cut(s)	1578, 2537, 3136, 3257
CseI	GACGC	2 cut(s)	607, 874
CsiI	ACCWGGT	2 cut(s)	2533, 2685
Csp6I	GTAC	7 cut(s)	553, 2202, 2331, 2590, 2807, 3227, 3531
CviQI	GTAC	7 cut(s)	553, 2202, 2331, 2590, 2807, 3227, 3531
DraIII	CACNNNGTG	1 cut(s)	2156
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	4 cut(s)	1969, 2094, 2863, 2907
EarI	CTCTTC	4 cut(s)	1969, 2094, 2863, 2907
EciI	GGCGGA	1 cut(s)	2290
Eco105I	TACGTA	2 cut(s)	556, 3530
Eco130I	CCWWGG	1 cut(s)	609
Eco24I	GRGCYC	1 cut(s)	1771
Eco32I	GATATC	1 cut(s)	1630
Eco47I	GGWCC	3 cut(s)	2537, 3136, 3257
Eco57I	CTGAAG	4 cut(s)	1530, 1618, 2384, 3330
Eco81I	CCTNAGG	2 cut(s)	2876, 2965
Eco88I	CYCGRG	2 cut(s)	2811, 2994
EcoO109I	RGGNCCY	2 cut(s)	1578, 3136
EcoRI	GAATTC	1 cut(s)	2644
EcoRII	CCWGG	8 cut(s)	1215, 1942, 2269, 2533, 2658, 2685, 2862, 2982
EcoRV	GATATC	1 cut(s)	1630
EcoT14I	CCWWGG	1 cut(s)	609
EcoT22I	ATGCAT	6 cut(s)	375, 842, 1885, 2125, 3081, 3337
EcoT38I	GRGCYC	1 cut(s)	1771
ErhI	CCWWGG	1 cut(s)	609
FalI	AAGNNNNNCTT	8 cut(s)	1241, 1273, 1893, 1925, 2031, 2063, 2612, 2644
FaqI	GGGAC	4 cut(s)	1083, 1552, 3001, 3412
FbaI	TGATCA	1 cut(s)	1090
FblI	GTMKAC	1 cut(s)	69
FokI	GGATG	6 cut(s)	53, 743, 971, 1028, 1240, 3344
FriOI	GRGCYC	1 cut(s)	1771
FspBI	CTAG	7 cut(s)	1286, 1938, 2055, 2061, 2154, 2220, 3122
FspI	TGCGCA	1 cut(s)	14
GlaI	GCGC	2 cut(s)	14, 3001
GsaI	CCCAGC	2 cut(s)	138, 1573
GsuI	CTGGAG	7 cut(s)	1470, 1785, 1953, 2112, 2217, 2436, 3236
HapII	CCGG	4 cut(s)	38, 225, 760, 2240
HgaI	GACGC	2 cut(s)	607, 874
HhaI	GCGC	2 cut(s)	15, 3002
Hin6I	GCGC	2 cut(s)	13, 3000
HinP1I	GCGC	2 cut(s)	13, 3000
HincII	GTYRAC	3 cut(s)	149, 1596, 2640
HindII	GTYRAC	3 cut(s)	149, 1596, 2640
HpaI	GTTAAC	2 cut(s)	1596, 2640
HpaII	CCGG	4 cut(s)	38, 225, 760, 2240
HphI	GGTGA	7 cut(s)	461, 833, 1177, 1308, 1641, 1851, 2629
HpyCH4III	ACNGT	8 cut(s)	48, 552, 935, 1167, 1498, 1675, 2784, 3257
HpyCH4IV	ACGT	8 cut(s)	72, 360, 461, 555, 865, 1359, 2329, 3529
HpyF10VI	GCNNNNNNNGC	7 cut(s)	370, 379, 769, 2249, 2309, 2999, 3454
HpySE526I	ACGT	8 cut(s)	72, 360, 461, 555, 865, 1359, 2329, 3529
HspAI	GCGC	2 cut(s)	13, 3000
KpnI	GGTACC	1 cut(s)	2205
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	1090
KspAI	GTTAAC	2 cut(s)	1596, 2640
LmnI	GCTCC	5 cut(s)	490, 1766, 2230, 2455, 2731
Lsp1109I	GCAGC	8 cut(s)	71, 403, 1132, 1552, 2038, 2476, 2918, 3485
MabI	ACCWGGT	2 cut(s)	2533, 2685
MaeI	CTAG	7 cut(s)	1286, 1938, 2055, 2061, 2154, 2220, 3122
MaeII	ACGT	8 cut(s)	72, 360, 461, 555, 865, 1359, 2329, 3529
MaeIII	GTNAC	4 cut(s)	703, 1498, 1981, 3525
MfeI	CAATTG	3 cut(s)	2567, 2593, 3170
MflI	RGATCY	6 cut(s)	54, 996, 1104, 1129, 2677, 3358
MhlI	GDGCHC	6 cut(s)	162, 354, 604, 1771, 2161, 2227
MlyI	GAGTC	2 cut(s)	730, 3064
MmeI	TCCRAC	4 cut(s)	444, 1179, 2525, 2738
Mph1103I	ATGCAT	6 cut(s)	375, 842, 1885, 2125, 3081, 3337
MroNI	GCCGGC	1 cut(s)	224
MroXI	GAANNNNTTC	3 cut(s)	972, 1224, 2483
MseI	TTAA	9 cut(s)	518, 792, 804, 1595, 2639, 2699, 2739, 2798, 3033
MslI	CAYNNNNRTG	1 cut(s)	923
MspCI	CTTAAG	1 cut(s)	2738
MspI	CCGG	4 cut(s)	38, 225, 760, 2240
MspR9I	CCNGG	8 cut(s)	1217, 1944, 2271, 2535, 2660, 2687, 2864, 2984
MunI	CAATTG	3 cut(s)	2567, 2593, 3170
Mva1269I	GAATGC	2 cut(s)	842, 1610
MvaI	CCWGG	8 cut(s)	1217, 1944, 2271, 2535, 2660, 2687, 2864, 2984
MvnI	CGCG	2 cut(s)	885, 3002
MwoI	GCNNNNNNNGC	7 cut(s)	370, 379, 769, 2249, 2309, 2999, 3454
NaeI	GCCGGC	1 cut(s)	226
NgoMIV	GCCGGC	1 cut(s)	224
NlaIV	GGNNCC	9 cut(s)	486, 1580, 1768, 2203, 2244, 2263, 2299, 2451, 2625
NmeAIII	GCCGAG	2 cut(s)	247, 3340
NmuCI	GTSAC	1 cut(s)	1498
NsbI	TGCGCA	1 cut(s)	14
NsiI	ATGCAT	6 cut(s)	375, 842, 1885, 2125, 3081, 3337
NspI	RCATGY	4 cut(s)	952, 1402, 1883, 2467
PaeR7I	CTCGAG	1 cut(s)	2811
PagI	TCATGA	1 cut(s)	196
PasI	CCCWGGG	1 cut(s)	1943
PciI	ACATGT	2 cut(s)	948, 2463
PcsI	WCGNNNNNNNCGW	1 cut(s)	3526
PctI	GAATGC	2 cut(s)	842, 1610
PdiI	GCCGGC	1 cut(s)	226
PdmI	GAANNNNTTC	3 cut(s)	972, 1224, 2483
PfeI	GAWTC	9 cut(s)	1208, 1220, 1274, 1282, 1382, 1559, 2479, 2819, 3340
PflFI	GACNNNGTC	1 cut(s)	617
PflMI	CCANNNNNTGG	1 cut(s)	2294
PleI	GAGTC	2 cut(s)	730, 3064
PpsI	GAGTC	2 cut(s)	730, 3064
Ppu21I	YACGTR	3 cut(s)	556, 2330, 3530
PpuMI	RGGWCCY	1 cut(s)	3136
PscI	ACATGT	2 cut(s)	948, 2463
PshBI	ATTAAT	1 cut(s)	804
Psp5II	RGGWCCY	1 cut(s)	3136
Psp6I	CCWGG	8 cut(s)	1215, 1942, 2269, 2533, 2658, 2685, 2862, 2982
PspFI	CCCAGC	2 cut(s)	134, 1569
PspGI	CCWGG	8 cut(s)	1215, 1942, 2269, 2533, 2658, 2685, 2862, 2982
PspN4I	GGNNCC	9 cut(s)	486, 1580, 1768, 2203, 2244, 2263, 2299, 2451, 2625
PspPI	GGNCC	4 cut(s)	1578, 2537, 3136, 3257
PspPPI	RGGWCCY	1 cut(s)	3136
PspXI	VCTCGAGB	1 cut(s)	2811
PsrI	GAACNNNNNNTAC	2 cut(s)	3510, 3542
PstI	CTGCAG	1 cut(s)	2908
PstNI	CAGNNNCTG	1 cut(s)	1145
PsuI	RGATCY	6 cut(s)	54, 996, 1104, 1129, 2677, 3358
PsyI	GACNNNGTC	1 cut(s)	617
RsaI	GTAC	7 cut(s)	554, 2203, 2332, 2591, 2808, 3228, 3532
RsaNI	GTAC	7 cut(s)	553, 2202, 2331, 2590, 2807, 3227, 3531
RseI	CAYNNNNRTG	1 cut(s)	923
SaqAI	TTAA	9 cut(s)	518, 792, 804, 1595, 2639, 2699, 2739, 2798, 3033
Sau96I	GGNCC	4 cut(s)	1578, 2537, 3136, 3257
SchI	GAGTC	2 cut(s)	730, 3064
ScrFI	CCNGG	8 cut(s)	1217, 1944, 2271, 2535, 2660, 2687, 2864, 2984
SduI	GDGCHC	6 cut(s)	162, 354, 604, 1771, 2161, 2227
SexAI	ACCWGGT	2 cut(s)	2533, 2685
SfcI	CTRYAG	2 cut(s)	548, 2904
Sfr274I	CTCGAG	1 cut(s)	2811
SinI	GGWCC	3 cut(s)	2537, 3136, 3257
SlaI	CTCGAG	1 cut(s)	2811
SmiMI	CAYNNNNRTG	1 cut(s)	923
SmlI	CTYRAG	8 cut(s)	491, 1353, 1440, 1662, 1698, 2474, 2738, 2811
SmoI	CTYRAG	8 cut(s)	491, 1353, 1440, 1662, 1698, 2474, 2738, 2811
SnaBI	TACGTA	2 cut(s)	556, 3530
SsiI	CCGC	5 cut(s)	35, 883, 2301, 2492, 3002
SspMI	CTAG	7 cut(s)	1286, 1938, 2055, 2061, 2154, 2220, 3122
StyD4I	CCNGG	8 cut(s)	1215, 1942, 2269, 2533, 2658, 2685, 2862, 2982
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	8 cut(s)	48, 552, 935, 1167, 1498, 1675, 2784, 3257
TaiI	ACGT	8 cut(s)	75, 363, 464, 558, 868, 1362, 2332, 3532
TaqI	TCGA	7 cut(s)	51, 560, 598, 712, 734, 1178, 2812
TatI	WGTACW	1 cut(s)	3226
TauI	GCSGC	2 cut(s)	2495, 3005
TfiI	GAWTC	9 cut(s)	1208, 1220, 1274, 1282, 1382, 1559, 2479, 2819, 3340
Tru1I	TTAA	9 cut(s)	518, 792, 804, 1595, 2639, 2699, 2739, 2798, 3033
Tru9I	TTAA	9 cut(s)	518, 792, 804, 1595, 2639, 2699, 2739, 2798, 3033
TscAI	CASTG	9 cut(s)	1314, 1392, 1501, 1569, 1678, 2119, 2142, 2381, 2440
TseFI	GTSAC	1 cut(s)	1498
TseI	GCWGC	8 cut(s)	84, 416, 1145, 1540, 2051, 2489, 2906, 3473
Tsp45I	GTSAC	1 cut(s)	1498
TspGWI	ACGGA	2 cut(s)	3266, 3290
TspRI	CASTG	9 cut(s)	1314, 1392, 1501, 1569, 1678, 2119, 2142, 2381, 2440
Tth111I	GACNNNGTC	1 cut(s)	617
Van91I	CCANNNNNTGG	1 cut(s)	2294
Vha464I	CTTAAG	1 cut(s)	2738
VneI	GTGCAC	1 cut(s)	2157
VpaK11BI	GGWCC	3 cut(s)	2537, 3136, 3257
VspI	ATTAAT	1 cut(s)	804
XapI	RAATTY	6 cut(s)	1261, 2338, 2644, 2923, 3176, 3271
XbaI	TCTAGA	2 cut(s)	2060, 3121
XceI	RCATGY	4 cut(s)	952, 1402, 1883, 2467
XhoI	CTCGAG	1 cut(s)	2811
XmiI	GTMKAC	1 cut(s)	69
XmnI	GAANNNNTTC	3 cut(s)	972, 1224, 2483
XspI	CTAG	7 cut(s)	1286, 1938, 2055, 2061, 2154, 2220, 3122
Zsp2I	ATGCAT	6 cut(s)	375, 842, 1885, 2125, 3081, 3337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.