Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001865

Physical Location & Seq

Genomic Coordinates Reverse (-)

5092851 .. 5099137

Gene Structure 6287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1063500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTTACTTGCAACTGCTGCATATGTTGTGTGCTTAGTGGGGATCATATTGATGTACATATGGTATGCACCAGAACCAACTTGCCTCCTCAACATCTTCTTCATAACCTGGACATTAGTACTCCTACAACTCATGACCAGCGTCTCTCTCCACCCGAAAGTGAATGCCGGCATCTTGACTCCGGGTCTCATGGGGCTTTATATAGTATTCATCTGCTGGTTTGCTATTAGAAGTGAGCCAGCGGGGACAAGCTGCAACAAGAAGGCAGATGATTCAACCAAAACAGATTGGCTCACGATCATAAGCTTTGTTATAGCCGTGCTTGCAATGGTTATCGCAACATTCTCAACTGGCATAGATTCCAAATGCTTTCAGTTCAGGAAGGACGAGACTGAATCCGAGGATGATGTTCCATACGGTTATGGATTCTTCCATTTTGTTTTCGCCACGGGAGCAATGTACTTTGGAATGCTGCTGATTGGTTGGAATACTCATCAATCCATGAGAAGGTTTACGATTGATGTGGTGGGATGGGCCAGCACTTGGGTGAGGATTGTGAACGAGTGGATCGCGGTCTGCGTGTATTTATGGATGCTAGTTGCTCCAATCATATGGGAAAGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015194 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015825 GO:0015849 GO:0022857 GO:0022889 GO:0032329 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Serinc

Protein Analysis

209

Amino Acids

23.57

Weight (kDa)

5.24

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serinc	PF03348	4 - 129	2.3e-22	Serine incorporator (Serinc)
Serinc	PF03348	128 - 205	1.7e-19	Serine incorporator (Serinc)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24460 AT3G24460 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345
fragaria_vesca	FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181
malus_domestica	MD02G1063500.v1.1 MD02G1063900.v1.1 MD15G1188500.v1.1
prunus_persica	Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1
pyrus_communis	pycom02g04240 pycom02g04260 pycom15g16900
rosa_chinensis	RchiOBHm_Chr2g0090921
rosa_laevigata	RLG00000016155
rosa_roxburghii	Rroxscaffold_2G00150750 Rroxscaffold_6G00414260
rosa_rugosa	Rorug02G0010900 Rorug02G0011000 Rorug02G0011000 Rorug02G0011000 Rorug02G0011100 Rorug02G0011100
rosa_samantha	Rh2AG057200 Rh2BG055700 Rh2CG058000 Rh2DG056600
rosa_wichuraiana	Rw2G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	543
AccII	CGCG	1 cut(s)	572
AciI	CCGC	2 cut(s)	242, 572
AclWI	GGATC	2 cut(s)	50, 575
AfaI	GTAC	3 cut(s)	56, 120, 461
AfiI	CCNNNNNNNGG	2 cut(s)	507, 543
AgsI	TTSAA	1 cut(s)	276
AhdI	GACNNNNNGTC	1 cut(s)	183
AjnI	CCWGG	1 cut(s)	107
AleI	CACNNNNGTG	1 cut(s)	545
AluBI	AGCT	2 cut(s)	252, 306
AluI	AGCT	2 cut(s)	252, 306
Alw26I	GTCTC	3 cut(s)	148, 191, 383
AlwI	GGATC	2 cut(s)	50, 575
AoxI	GGCC	1 cut(s)	534
ApeKI	GCWGC	3 cut(s)	17, 252, 472
AspS9I	GGNCC	1 cut(s)	534
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	559
BbvI	GCAGC	3 cut(s)	4, 239, 459
BccI	CCATC	1 cut(s)	525
BceAI	ACGGC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	3 cut(s)	148, 191, 383
BfaI	CTAG	1 cut(s)	596
BisI	GCNGC	3 cut(s)	18, 253, 473
BlsI	GCNGC	3 cut(s)	19, 254, 474
BmcAI	AGTACT	1 cut(s)	120
Bme1390I	CCNGG	2 cut(s)	109, 183
BmeRI	GACNNNNNGTC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	534
BmrFI	CCNGG	2 cut(s)	109, 183
BmsI	GCATC	2 cut(s)	180, 582
BoxI	GACNNNNGTC	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	399, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	507, 543
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	355
Bse3DI	GCAATG	2 cut(s)	333, 462
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	2 cut(s)	399, 447
BseGI	GGATG	3 cut(s)	409, 536, 597
BseLI	CCNNNNNNNGG	2 cut(s)	507, 543
BseMI	GCAATG	2 cut(s)	333, 462
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	3 cut(s)	4, 239, 459
Bsh1236I	CGCG	1 cut(s)	572
BshFI	GGCC	1 cut(s)	536
BsiSI	CCGG	2 cut(s)	168, 182
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	2 cut(s)	507, 543
BsmAI	GTCTC	3 cut(s)	148, 191, 383
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	259
BsmI	GAATGC	2 cut(s)	169, 474
BsnI	GGCC	1 cut(s)	536
Bso31I	GGTCTC	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	42, 297, 567
BspACI	CCGC	2 cut(s)	242, 572
BspANI	GGCC	1 cut(s)	536
BspFNI	CGCG	1 cut(s)	572
BspHI	TCATGA	1 cut(s)	132
BspPI	GGATC	2 cut(s)	50, 575
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	2 cut(s)	333, 462
BsrFI	RCCGGY	1 cut(s)	167
BsrGI	TGTACA	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	399, 447
BssMI	GATC	3 cut(s)	42, 297, 567
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	419
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstAUI	TGTACA	1 cut(s)	54
BstC8I	GCNNGC	4 cut(s)	169, 240, 324, 538
BstDEI	CTNAG	1 cut(s)	34
BstDSI	CCRYGG	1 cut(s)	447
BstF5I	GGATG	3 cut(s)	409, 536, 597
BstFNI	CGCG	1 cut(s)	572
BstKTI	GATC	3 cut(s)	45, 300, 570
BstMAI	GTCTC	3 cut(s)	148, 191, 383
BstMBI	GATC	3 cut(s)	42, 297, 567
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 323, 452
BstNI	CCWGG	1 cut(s)	109
BstPAI	GACNNNNGTC	1 cut(s)	140
BstSCI	CCNGG	2 cut(s)	107, 181
BstUI	CGCG	1 cut(s)	572
BstV1I	GCAGC	3 cut(s)	4, 239, 459
BstXI	CCANNNNNNTGG	1 cut(s)	612
BsuRI	GGCC	1 cut(s)	536
BtgI	CCRYGG	1 cut(s)	447
BtsCI	GGATG	3 cut(s)	409, 536, 597
Cac8I	GCNNGC	4 cut(s)	169, 240, 324, 538
CciI	TCATGA	1 cut(s)	132
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	534
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	3 cut(s)	55, 119, 460
CviAII	CATG	3 cut(s)	133, 190, 502
CviJI	RGCY	7 cut(s)	196, 238, 252, 292, 306, 317, 536
CviKI_1	RGCY	7 cut(s)	196, 238, 252, 292, 306, 317, 536
CviQI	GTAC	3 cut(s)	55, 119, 460
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	3 cut(s)	44, 299, 569
DpnII	GATC	3 cut(s)	42, 297, 567
DriI	GACNNNNNGTC	1 cut(s)	183
Eam1105I	GACNNNNNGTC	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	107
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	3 cut(s)	136, 193, 505
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	3 cut(s)	132, 189, 501
FauI	CCCGC	1 cut(s)	235
FauNDI	CATATG	3 cut(s)	22, 59, 611
Fnu4HI	GCNGC	3 cut(s)	18, 253, 473
FokI	GGATG	3 cut(s)	416, 543, 604
Fsp4HI	GCNGC	3 cut(s)	18, 253, 473
FspBI	CTAG	1 cut(s)	596
GluI	GCNGC	3 cut(s)	18, 253, 473
HaeIII	GGCC	1 cut(s)	536
HapII	CCGG	2 cut(s)	168, 182
HgaI	GACGC	1 cut(s)	130
Hin1II	CATG	3 cut(s)	136, 193, 505
HindIII	AAGCTT	1 cut(s)	304
HinfI	GANTC	5 cut(s)	178, 272, 359, 395, 426
HpaII	CCGG	2 cut(s)	168, 182
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	2 cut(s)	513, 559
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	4 cut(s)	133, 175, 295, 379
Hpy8I	GTNNAC	2 cut(s)	513, 559
HpyAV	CCTTC	3 cut(s)	256, 376, 501
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4V	TGCA	5 cut(s)	11, 20, 68, 255, 326
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 323, 452
HpyF3I	CTNAG	1 cut(s)	34
Hsp92II	CATG	3 cut(s)	136, 193, 505
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	42, 297, 567
LmnI	GCTCC	2 cut(s)	452, 607
Lsp1109I	GCAGC	3 cut(s)	4, 239, 459
LweI	GCATC	2 cut(s)	180, 582
MaeI	CTAG	1 cut(s)	596
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	3 cut(s)	44, 299, 569
MboI	GATC	3 cut(s)	42, 297, 567
MboII	GAAGA	3 cut(s)	88, 91, 421
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	464
MnlI	CCTC	4 cut(s)	95, 98, 394, 543
MroNI	GCCGGC	1 cut(s)	167
MslI	CAYNNNNRTG	2 cut(s)	50, 545
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	2 cut(s)	168, 182
MspR9I	CCNGG	2 cut(s)	109, 183
Mva1269I	GAATGC	2 cut(s)	169, 474
MvaI	CCWGG	1 cut(s)	109
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	3 cut(s)	17, 323, 452
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	1 cut(s)	183
NdeI	CATATG	3 cut(s)	22, 59, 611
NdeII	GATC	3 cut(s)	42, 297, 567
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	3 cut(s)	136, 193, 505
OliI	CACNNNNGTG	1 cut(s)	545
PagI	TCATGA	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	576
PctI	GAATGC	2 cut(s)	169, 474
PdiI	GCCGGC	1 cut(s)	169
PfeI	GAWTC	4 cut(s)	272, 359, 395, 426
PflMI	CCANNNNNTGG	1 cut(s)	543
PkrI	GCNGC	3 cut(s)	19, 254, 474
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PshAI	GACNNNNGTC	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspPI	GGNCC	1 cut(s)	534
RsaI	GTAC	3 cut(s)	56, 120, 461
RsaNI	GTAC	3 cut(s)	55, 119, 460
RseI	CAYNNNNRTG	2 cut(s)	50, 545
SatI	GCNGC	3 cut(s)	18, 253, 473
Sau3AI	GATC	3 cut(s)	42, 297, 567
Sau96I	GGNCC	1 cut(s)	534
ScaI	AGTACT	1 cut(s)	120
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	2 cut(s)	109, 183
SetI	ASST	4 cut(s)	110, 254, 308, 512
SfaNI	GCATC	2 cut(s)	180, 582
SmiMI	CAYNNNNRTG	2 cut(s)	50, 545
SsiI	CCGC	2 cut(s)	242, 572
SspMI	CTAG	1 cut(s)	596
StyD4I	CCNGG	2 cut(s)	107, 181
TaaI	ACNGT	1 cut(s)	419
TatI	WGTACW	3 cut(s)	54, 118, 459
TfiI	GAWTC	4 cut(s)	272, 359, 395, 426
TseI	GCWGC	3 cut(s)	17, 252, 472
TspDTI	ATGAA	2 cut(s)	91, 199
Van91I	CCANNNNNTGG	1 cut(s)	543
XspI	CTAG	1 cut(s)	596
ZrmI	AGTACT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.