FvH4_1g05181

Serine incorporator

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
2768569 .. 2773296
4728 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05181.t1

Sequence Viewer

Length: 1212 bp
ATGGTAGAGAAAATGGAGAGTCCTGCTCCAACAGGCAACTACGAGAGGAGCAACACCTTCAAAGTTGATACATGGTTTAGCCAATTCCGGAATGGCTCCAATCCATGGATGGCAAGATATGTCTATGGTTTTATGTTTCTGCTAGCAAATCTTATGGCATGGGCCGTAAGGGATTACGGAAACAGCGTCCTGATCGAGATGAACAGGTTAAGAGGATGTGATGGTGCACATGACTGTTTGGCTACAGAAGGTGTTCTTCGTGTGAGCTTGGGATGCTTTTTGTTTTATTTCTCTATGTTTCTTTCAACCGCGGGTGCTTCGAAGTTGAACGAGTCCAGAGATACATGGCAATCTGGATGGTGGTCTGCTAAGATTGTCCTGTGGATTGCTTTCATTATTATCCCCTTTTTGCTTCCTTCGGCTATTATAAAGCTCTATGGTGTGGTTGCACATTTTGGCGCCGGGGTATTCCTTCTGATTCAACTAATAAGCGTAATTAGTTTCATTACATGGGTGAACGATTGCTGCCAGTCTTCGAAATCAGAGAGATGCCAAATTCATTCAATGCTAATTGCAACAGCAGCATATGTTGTAAGCTTAGTGGGGATAATAATGATGTACATATGGTATTCACCAGAACCATCTTGCGTCATCAACATTTTCTTCATTACCTGGACATTGGTACTACTGCAACTCATGACGAGCGTCTCTCTCCACCCAAAAGTGAATGCTGGTATCTTGACTCCAGGGCTCATGGGACTCTATATAGTATTTATCTGCTGGTTTGCCATTAGAAGTGAGCCAGTAGCAGGGAACTTTTGCAACAGGAAGGCGGAAGCTTCACAGCATAGGGATTGGCTCACCGTCATAAGCTTTGTTATTGGTGTACTCGCAATGGTTATTGCAACATTTTCAACGGGTATAGACTCCAAATGCTTTCAGTTCAAGAAGGACGAGACTGAATCCGAGGATGATGTTCCATACGGCTATGGCTTCTTCCATTTCGTTTTCGCCACAGGAGCAATGTACTTCGCGATGCTATTGATCGGTTGGAATACTAATCACTCCATGAAAAAGTGGACAATTGATGTGGGATGGACTAGCACTTGGGTCAGAATTGTGAACGAGTGGATCGCTGTCTGTGTGTATTTGTGGATGCTGGTTGCTCCAATTATATGGAAGAGTAGACAAACAACTGAATCGATCGTATAA

Protein Analysis

404

Amino Acids

45.78

Weight (kDa)

7.52

Isoelectric Point (pI)

28.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 26 - 318 1.6e-50 Serine incorporator (Serinc)
Serinc PF03348 317 - 396 6.7e-20 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AccB1I GGYRCC 1 cut(s) 458
AccB7I CCANNNNNTGG 1 cut(s) 105
AccI GTMKAC 1 cut(s) 1186
AccII CGCG 2 cut(s) 311, 1034
AccIII TCCGGA 1 cut(s) 87
AciI CCGC 3 cut(s) 309, 311, 833
AclWI GGATC 1 cut(s) 1139
AcsI RAATTY 1 cut(s) 555
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 4 cut(s) 620, 684, 888, 1028
AfiI CCNNNNNNNGG 2 cut(s) 105, 809
AgsI TTSAA 7 cut(s) 61, 306, 328, 482, 564, 915, 946
AjnI CCWGG 2 cut(s) 671, 745
AluBI AGCT 5 cut(s) 267, 433, 597, 839, 873
AluI AGCT 5 cut(s) 267, 433, 597, 839, 873
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 2 cut(s) 712, 950
Alw44I GTGCAC 1 cut(s) 225
AlwI GGATC 1 cut(s) 1139
Aor13HI TCCGGA 1 cut(s) 87
AoxI GGCC 1 cut(s) 162
ApaLI GTGCAC 1 cut(s) 225
ApeKI GCWGC 2 cut(s) 525, 581
ApoI RAATTY 1 cut(s) 555
Asp700I GAANNNNTTC 1 cut(s) 252
AspLEI GCGC 1 cut(s) 461
AspS9I GGNCC 1 cut(s) 162
AsuC2I CCSGG 1 cut(s) 463
AsuHPI GGTGA 3 cut(s) 526, 624, 853
AsuII TTCGAA 2 cut(s) 320, 536
AsuNHI GCTAGC 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 229
BanI GGYRCC 1 cut(s) 458
BanII GRGCYC 1 cut(s) 753
BbsI GAAGAC 1 cut(s) 525
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 2 cut(s) 512, 593
BccI CCATC 5 cut(s) 103, 215, 351, 649, 1089
BceAI ACGGC 2 cut(s) 149, 1000
BciT130I CCWGG 2 cut(s) 673, 747
BcnI CCSGG 1 cut(s) 463
BcoDI GTCTC 2 cut(s) 712, 950
BfaI CTAG 2 cut(s) 143, 1101
BfmI CTRYAG 1 cut(s) 243
BfoI RGCGCY 1 cut(s) 462
BisI GCNGC 2 cut(s) 526, 582
BlsI GCNGC 2 cut(s) 527, 583
Bme1390I CCNGG 3 cut(s) 463, 673, 747
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 2 cut(s) 97, 460
BmrFI CCNGG 3 cut(s) 463, 673, 747
BmsI GCATC 4 cut(s) 263, 539, 1026, 1146
BmtI GCTAGC 1 cut(s) 146
BoxI GACNNNNGTC 1 cut(s) 704
BpiI GAAGAC 1 cut(s) 525
BplI GAGNNNNNCTC 4 cut(s) 10, 42, 694, 726
BpmI CTGGAG 1 cut(s) 729
Bpu14I TTCGAA 2 cut(s) 320, 536
BpuMI CCSGG 1 cut(s) 463
Bsa29I ATCGAT 1 cut(s) 1202
BsaHI GRCGYC 1 cut(s) 459
BsaJI CCNNGG 5 cut(s) 104, 309, 462, 746, 966
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 809
Bse1I ACTGG 2 cut(s) 529, 803
Bse3DI GCAATG 2 cut(s) 900, 1029
BseAI TCCGGA 1 cut(s) 87
BseBI CCWGG 2 cut(s) 673, 747
BseCI ATCGAT 1 cut(s) 1202
BseDI CCNNGG 5 cut(s) 104, 309, 462, 746, 966
BseGI GGATG 7 cut(s) 114, 221, 278, 362, 976, 1100, 1161
BseLI CCNNNNNNNGG 2 cut(s) 105, 809
BseMI GCAATG 2 cut(s) 900, 1029
BseNI ACTGG 2 cut(s) 529, 803
BseRI GAGGAG 1 cut(s) 61
BseSI GKGCMC 1 cut(s) 229
BseXI GCAGC 2 cut(s) 512, 593
Bsh1236I CGCG 2 cut(s) 311, 1034
Bsh1285I CGRYCG 1 cut(s) 1206
BshFI GGCC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 458
BshVI ATCGAT 1 cut(s) 1202
BsiEI CGRYCG 1 cut(s) 1206
BsiHKAI GWGCWC 1 cut(s) 229
BsiSI CCGG 2 cut(s) 88, 462
BslFI GGGAC 1 cut(s) 771
BslI CCNNNNNNNGG 2 cut(s) 105, 809
BsmAI GTCTC 2 cut(s) 712, 950
BsmBI CGTCTC 1 cut(s) 712
BsmFI GGGAC 1 cut(s) 771
BsmI GAATGC 1 cut(s) 733
BsnI GGCC 1 cut(s) 164
Bsp119I TTCGAA 2 cut(s) 320, 536
Bsp1286I GDGCHC 2 cut(s) 229, 753
Bsp13I TCCGGA 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 618
Bsp143I GATC 4 cut(s) 192, 1044, 1131, 1203
Bsp19I CCATGG 1 cut(s) 104
Bsp68I TCGCGA 1 cut(s) 1034
BspACI CCGC 3 cut(s) 309, 311, 833
BspANI GGCC 1 cut(s) 164
BspDI ATCGAT 1 cut(s) 1202
BspEI TCCGGA 1 cut(s) 87
BspFNI CGCG 2 cut(s) 311, 1034
BspHI TCATGA 1 cut(s) 696
BspLI GGNNCC 2 cut(s) 97, 460
BspOI GCTAGC 1 cut(s) 146
BspPI GGATC 1 cut(s) 1139
BspT104I TTCGAA 2 cut(s) 320, 536
BspT107I GGYRCC 1 cut(s) 458
BsrDI GCAATG 2 cut(s) 900, 1029
BsrGI TGTACA 1 cut(s) 618
BsrI ACTGG 2 cut(s) 529, 803
BssECI CCNNGG 5 cut(s) 104, 309, 462, 746, 966
BssMI GATC 4 cut(s) 192, 1044, 1131, 1203
BssNI GRCGYC 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 104
Bst2UI CCWGG 2 cut(s) 673, 747
Bst4CI ACNGT 2 cut(s) 236, 865
Bst6I CTCTTC 1 cut(s) 1175
BstACI GRCGYC 1 cut(s) 459
BstAUI TGTACA 1 cut(s) 618
BstBI TTCGAA 2 cut(s) 320, 536
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 369, 598
BstDSI CCRYGG 2 cut(s) 104, 309
BstF5I GGATG 7 cut(s) 114, 221, 278, 362, 976, 1100, 1161
BstFNI CGCG 2 cut(s) 311, 1034
BstH2I RGCGCY 1 cut(s) 462
BstHHI GCGC 1 cut(s) 461
BstKTI GATC 4 cut(s) 195, 1047, 1134, 1206
BstMAI GTCTC 2 cut(s) 712, 950
BstMBI GATC 4 cut(s) 192, 1044, 1131, 1203
BstMCI CGRYCG 1 cut(s) 1206
BstMWI GCNNNNNNNGC 3 cut(s) 273, 581, 1019
BstNI CCWGG 2 cut(s) 673, 747
BstPAI GACNNNNGTC 1 cut(s) 704
BstSCI CCNGG 3 cut(s) 461, 671, 745
BstSFI CTRYAG 1 cut(s) 243
BstSLI GKGCMC 1 cut(s) 229
BstUI CGCG 2 cut(s) 311, 1034
BstV1I GCAGC 2 cut(s) 512, 593
BstV2I GAAGAC 1 cut(s) 525
BstXI CCANNNNNNTGG 1 cut(s) 1176
Bsu15I ATCGAT 1 cut(s) 1202
BsuRI GGCC 1 cut(s) 164
BsuTUI ATCGAT 1 cut(s) 1202
BtgI CCRYGG 2 cut(s) 104, 309
BtgZI GCGATG 1 cut(s) 1049
BtsCI GGATG 7 cut(s) 114, 221, 278, 362, 976, 1100, 1161
BtuMI TCGCGA 1 cut(s) 1034
Cac8I GCNNGC 1 cut(s) 144
CciI TCATGA 1 cut(s) 696
CfoI GCGC 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 162
Cfr42I CCGCGG 1 cut(s) 312
ClaI ATCGAT 1 cut(s) 1202
CseI GACGC 3 cut(s) 175, 637, 694
Csp6I GTAC 4 cut(s) 619, 683, 887, 1027
CspCI CAANNNNNGTGG 2 cut(s) 1071, 1106
CviAII CATG 9 cut(s) 72, 105, 159, 230, 345, 510, 697, 754, 1069
CviQI GTAC 4 cut(s) 619, 683, 887, 1027
DdeI CTNAG 2 cut(s) 369, 598
DinI GGCGCC 1 cut(s) 460
DpnI GATC 4 cut(s) 194, 1046, 1133, 1205
DpnII GATC 4 cut(s) 192, 1044, 1131, 1203
Eam1104I CTCTTC 1 cut(s) 1175
EarI CTCTTC 1 cut(s) 1175
EciI GGCGGA 1 cut(s) 848
Eco130I CCWWGG 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 753
EcoRII CCWGG 2 cut(s) 671, 745
EcoT14I CCWWGG 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 753
EgeI GGCGCC 1 cut(s) 460
EheI GGCGCC 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 104
Esp3I CGTCTC 1 cut(s) 712
FaeI CATG 9 cut(s) 75, 108, 162, 233, 348, 513, 700, 757, 1072
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FaqI GGGAC 1 cut(s) 771
FatI CATG 9 cut(s) 71, 104, 158, 229, 344, 509, 696, 753, 1068
FauI CCCGC 1 cut(s) 304
FauNDI CATATG 2 cut(s) 586, 623
FblI GTMKAC 1 cut(s) 1186
Fnu4HI GCNGC 2 cut(s) 526, 582
FokI GGATG 7 cut(s) 121, 228, 285, 369, 983, 1107, 1168
FriOI GRGCYC 1 cut(s) 753
Fsp4HI GCNGC 2 cut(s) 526, 582
FspBI CTAG 2 cut(s) 143, 1101
GlaI GCGC 1 cut(s) 460
GluI GCNGC 2 cut(s) 526, 582
GsuI CTGGAG 1 cut(s) 729
HaeII RGCGCY 1 cut(s) 462
HaeIII GGCC 1 cut(s) 164
HapII CCGG 2 cut(s) 88, 462
HgaI GACGC 3 cut(s) 175, 637, 694
HhaI GCGC 1 cut(s) 461
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 9 cut(s) 75, 108, 162, 233, 348, 513, 700, 757, 1072
Hin6I GCGC 1 cut(s) 459
HinP1I GCGC 1 cut(s) 459
HindIII AAGCTT 3 cut(s) 595, 837, 871
HinfI GANTC 8 cut(s) 19, 332, 478, 742, 759, 926, 962, 1199
HpaII CCGG 2 cut(s) 88, 462
HphI GGTGA 3 cut(s) 526, 624, 853
Hpy166II GTNNAC 6 cut(s) 227, 517, 887, 1080, 1123, 1187
Hpy188I TCNGA 4 cut(s) 477, 544, 967, 1115
Hpy188III TCNNGA 9 cut(s) 88, 190, 196, 336, 354, 697, 739, 946, 1033
Hpy8I GTNNAC 6 cut(s) 227, 517, 887, 1080, 1123, 1187
HpyAV CCTTC 6 cut(s) 67, 242, 426, 482, 823, 943
HpyCH4III ACNGT 2 cut(s) 236, 865
HpyCH4V TGCA 6 cut(s) 227, 449, 575, 691, 822, 905
HpyF10VI GCNNNNNNNGC 3 cut(s) 273, 581, 1019
HpyF3I CTNAG 2 cut(s) 369, 598
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 9 cut(s) 75, 108, 162, 233, 348, 513, 700, 757, 1072
HspAI GCGC 1 cut(s) 459
KasI GGCGCC 1 cut(s) 458
Kpn2I TCCGGA 1 cut(s) 87
KspI CCGCGG 1 cut(s) 312
Kzo9I GATC 4 cut(s) 192, 1044, 1131, 1203
LmnI GCTCC 5 cut(s) 31, 48, 101, 1019, 1171
Lsp1109I GCAGC 2 cut(s) 512, 593
LweI GCATC 4 cut(s) 263, 539, 1026, 1146
MaeI CTAG 2 cut(s) 143, 1101
MalI GATC 4 cut(s) 194, 1046, 1133, 1205
MboI GATC 4 cut(s) 192, 1044, 1131, 1203
MboII GAAGA 5 cut(s) 248, 525, 655, 988, 1192
MfeI CAATTG 1 cut(s) 1083
MhlI GDGCHC 2 cut(s) 229, 753
MluCI AATT 7 cut(s) 83, 495, 555, 570, 1083, 1116, 1170
Mly113I GGCGCC 1 cut(s) 459
MlyI GAGTC 5 cut(s) 28, 341, 736, 753, 920
MmeI TCCRAC 2 cut(s) 53, 1031
MnlI CCTC 3 cut(s) 39, 206, 961
MroI TCCGGA 1 cut(s) 87
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 311
MspI CCGG 2 cut(s) 88, 462
MspR9I CCNGG 3 cut(s) 463, 673, 747
MunI CAATTG 1 cut(s) 1083
Mva1269I GAATGC 1 cut(s) 733
MvaI CCWGG 2 cut(s) 673, 747
MvnI CGCG 2 cut(s) 311, 1034
MwoI GCNNNNNNNGC 3 cut(s) 273, 581, 1019
NarI GGCGCC 1 cut(s) 459
NciI CCSGG 1 cut(s) 463
NcoI CCATGG 1 cut(s) 104
NdeI CATATG 2 cut(s) 586, 623
NdeII GATC 4 cut(s) 192, 1044, 1131, 1203
NheI GCTAGC 1 cut(s) 142
NlaIII CATG 9 cut(s) 75, 108, 162, 233, 348, 513, 700, 757, 1072
NlaIV GGNNCC 2 cut(s) 97, 460
NruI TCGCGA 1 cut(s) 1034
NspV TTCGAA 2 cut(s) 320, 536
PagI TCATGA 1 cut(s) 696
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 1 cut(s) 733
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 3 cut(s) 478, 962, 1199
PflMI CCANNNNNTGG 1 cut(s) 105
PkrI GCNGC 2 cut(s) 527, 583
Ple19I CGATCG 1 cut(s) 1206
PleI GAGTC 5 cut(s) 27, 340, 736, 753, 920
PluTI GGCGCC 1 cut(s) 462
PpsI GAGTC 5 cut(s) 27, 340, 736, 753, 920
PshAI GACNNNNGTC 1 cut(s) 704
PsiI TTATAA 1 cut(s) 428
Psp6I CCWGG 2 cut(s) 671, 745
PspGI CCWGG 2 cut(s) 671, 745
PspN4I GGNNCC 2 cut(s) 97, 460
PspPI GGNCC 1 cut(s) 162
PvuI CGATCG 1 cut(s) 1206
RruI TCGCGA 1 cut(s) 1034
RsaI GTAC 4 cut(s) 620, 684, 888, 1028
RsaNI GTAC 4 cut(s) 619, 683, 887, 1027
SacII CCGCGG 1 cut(s) 312
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 2 cut(s) 526, 582
Sau3AI GATC 4 cut(s) 192, 1044, 1131, 1203
Sau96I GGNCC 1 cut(s) 162
SchI GAGTC 5 cut(s) 28, 341, 736, 753, 920
ScrFI CCNGG 3 cut(s) 463, 673, 747
SduI GDGCHC 2 cut(s) 229, 753
SetI ASST 9 cut(s) 59, 209, 253, 269, 435, 599, 674, 841, 875
SfaNI GCATC 4 cut(s) 263, 539, 1026, 1146
SfcI CTRYAG 1 cut(s) 243
SfoI GGCGCC 1 cut(s) 460
Sfr303I CCGCGG 1 cut(s) 312
SfuI TTCGAA 2 cut(s) 320, 536
SgrBI CCGCGG 1 cut(s) 312
Sse9I AATT 7 cut(s) 83, 495, 555, 570, 1083, 1116, 1170
SsiI CCGC 3 cut(s) 309, 311, 833
SspDI GGCGCC 1 cut(s) 458
SspMI CTAG 2 cut(s) 143, 1101
StyD4I CCNGG 3 cut(s) 461, 671, 745
StyI CCWWGG 1 cut(s) 104
TaaI ACNGT 2 cut(s) 236, 865
TaqI TCGA 4 cut(s) 195, 320, 536, 1202
TasI AATT 7 cut(s) 83, 495, 555, 570, 1083, 1116, 1170
TatI WGTACW 3 cut(s) 618, 886, 1026
TfiI GAWTC 3 cut(s) 478, 962, 1199
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TseI GCWGC 2 cut(s) 525, 581
TspDTI ATGAA 6 cut(s) 215, 382, 493, 548, 655, 1085
TspGWI ACGGA 1 cut(s) 192
Van91I CCANNNNNTGG 1 cut(s) 105
VneI GTGCAC 1 cut(s) 225
XapI RAATTY 1 cut(s) 555
XcmI CCANNNNNNNNNTGG 2 cut(s) 89, 106
XmiI GTMKAC 1 cut(s) 1186
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 2 cut(s) 143, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.