Rh2CG058000

Serine incorporator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001865
Physical Location & Seq
Forward (+)
4680296 .. 4685624
5329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG058000.1

Sequence Viewer

Length: 957 bp
ATGGAGAGTCCTGCTCCAACAGGCAACAATGAGAGGAGCAACACGTTCAAAGTTGATACATGGTTTAGCCAATTCCGGAATGGCTCGAACCCATGGATGGCTAGATATGTTTATGGTCTTATGTTTCTGCTAGCAAATCTTCTGGCATGGGCCGTCCGGGATTACGGAAAGAGCTTCTTGATGGAGATGAAAAGGTTAGAAAGATGTGGAGGTCAAAATGAATGTTTGGCTGCAGAAGGTGTTCTTCGTGTGAGCTTGGGATGCTTTTTGTTTTATTTCTCTATGTTTCTTTCAACCGCGGGTGCCTCGAAGTTGAATGAGTCCAGAGATACTTGGCAATCTGGATGGTGGTCTGCTAAGATTGTCCTGTGGATTGCTTTCATTATCATCCCCTTTTTGCTTCCTTCGGCTATTATAAAGATCTATGGTGTGGTTGCACATTTTGGCGCCGGGGTATTTCTTCTGATTCAGCTAATAAGCATAATCAGTTTCATTAGATGGGTGAACGACTGCTGTCAGTCTTCTAAATCAGAAAGATGCCAAATTCATTCAATGCTAATTGCAACAACTGCATATGTTGTAAGCTTAGTGGGGATCATAATGATGTACATATGGTATTCACCAGATCCATCTTGCTTCATCAACATTTTCTTCATTACCTGGACATTAGTACTACTTCAACTCATGACGAGCGTCTCTCTCCACCCAAAAGTGAATGCTGGTATCTTGACTCCGGGGCTCATGGGGCTCTATATAGTATTTATCTGCTGGTTTGCCATTAGAAGTGAGCCAGTAGCAGGGAACCTTTGCAACAGGAAGGCAGAAGCTTCACAGCATAGGGATTGGCTCAGCATTATAAGCTTTGTTATTGGTGTACTTGCAATCGTTATTGCAACATTTTCAACAGGCATAGACTCCAAATGCTTTCAGGTCTGCTCTCTGCAACATTTTAGTTGA

Protein Analysis

318

Amino Acids

35.81

Weight (kDa)

8.76

Isoelectric Point (pI)

31.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 22 - 308 2.1e-51 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 416, 857
AccB1I GGYRCC 2 cut(s) 302, 446
AccII CGCG 1 cut(s) 299
AccIII TCCGGA 1 cut(s) 75
AciI CCGC 2 cut(s) 297, 299
AclWI GGATC 2 cut(s) 602, 620
AcsI RAATTY 1 cut(s) 543
AcyI GRCGYC 1 cut(s) 447
AfaI GTAC 3 cut(s) 608, 672, 876
AfiI CCNNNNNNNGG 2 cut(s) 97, 797
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 6 cut(s) 49, 294, 316, 552, 680, 903
AjnI CCWGG 1 cut(s) 659
AluBI AGCT 6 cut(s) 174, 255, 472, 585, 827, 861
AluI AGCT 6 cut(s) 174, 255, 472, 585, 827, 861
Alw26I GTCTC 1 cut(s) 700
AlwI GGATC 2 cut(s) 602, 620
Aor13HI TCCGGA 1 cut(s) 75
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 543
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 1 cut(s) 449
AspS9I GGNCC 1 cut(s) 150
AsuC2I CCSGG 3 cut(s) 158, 451, 735
AsuHPI GGTGA 2 cut(s) 514, 612
AsuNHI GCTAGC 1 cut(s) 130
BanI GGYRCC 2 cut(s) 302, 446
BanII GRGCYC 2 cut(s) 741, 750
BbsI GAAGAC 1 cut(s) 513
BbvI GCAGC 1 cut(s) 217
BccI CCATC 5 cut(s) 91, 175, 339, 492, 637
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 661
BcnI CCSGG 3 cut(s) 158, 451, 735
BcoDI GTCTC 1 cut(s) 700
BfaI CTAG 2 cut(s) 102, 131
BfmI CTRYAG 1 cut(s) 231
BfoI RGCGCY 1 cut(s) 450
BglII AGATCT 1 cut(s) 420
BisI GCNGC 1 cut(s) 231
BlpI GCTNAGC 1 cut(s) 848
BlsI GCNGC 1 cut(s) 232
BmcAI AGTACT 1 cut(s) 672
Bme1390I CCNGG 4 cut(s) 158, 451, 661, 735
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 3 cut(s) 304, 448, 803
BmrFI CCNGG 4 cut(s) 158, 451, 661, 735
BmsI GCATC 2 cut(s) 251, 527
BmtI GCTAGC 1 cut(s) 134
BoxI GACNNNNGTC 2 cut(s) 513, 692
BpiI GAAGAC 1 cut(s) 513
BplI GAGNNNNNCTC 3 cut(s) 30, 682, 714
Bpu1102I GCTNAGC 1 cut(s) 848
BpuMI CCSGG 3 cut(s) 158, 451, 735
BsaHI GRCGYC 1 cut(s) 447
BsaJI CCNNGG 4 cut(s) 92, 297, 450, 734
BsaWI WCCGGW 1 cut(s) 75
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 797
Bse1I ACTGG 1 cut(s) 791
BseAI TCCGGA 1 cut(s) 75
BseBI CCWGG 1 cut(s) 661
BseDI CCNNGG 4 cut(s) 92, 297, 450, 734
BseGI GGATG 4 cut(s) 102, 266, 350, 387
BseLI CCNNNNNNNGG 2 cut(s) 97, 797
BseMII CTCAG 1 cut(s) 862
BseNI ACTGG 1 cut(s) 791
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 299
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 2 cut(s) 302, 446
BsiSI CCGG 4 cut(s) 76, 157, 450, 734
BslI CCNNNNNNNGG 2 cut(s) 97, 797
BsmAI GTCTC 1 cut(s) 700
BsmBI CGTCTC 1 cut(s) 700
BsmI GAATGC 1 cut(s) 721
BsnI GGCC 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 741, 750
Bsp13I TCCGGA 1 cut(s) 75
Bsp1407I TGTACA 1 cut(s) 606
Bsp143I GATC 3 cut(s) 420, 594, 625
Bsp1720I GCTNAGC 1 cut(s) 848
Bsp19I CCATGG 1 cut(s) 92
BspACI CCGC 2 cut(s) 297, 299
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 861
BspEI TCCGGA 1 cut(s) 75
BspFNI CGCG 1 cut(s) 299
BspHI TCATGA 1 cut(s) 684
BspLI GGNNCC 3 cut(s) 304, 448, 803
BspMAI CTGCAG 1 cut(s) 235
BspOI GCTAGC 1 cut(s) 134
BspPI GGATC 2 cut(s) 602, 620
BspT107I GGYRCC 2 cut(s) 302, 446
BsrGI TGTACA 1 cut(s) 606
BsrI ACTGG 1 cut(s) 791
BssECI CCNNGG 4 cut(s) 92, 297, 450, 734
BssMI GATC 3 cut(s) 420, 594, 625
BssNI GRCGYC 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 661
BstACI GRCGYC 1 cut(s) 447
BstAPI GCANNNNNTGC 1 cut(s) 569
BstAUI TGTACA 1 cut(s) 606
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 3 cut(s) 357, 586, 848
BstDSI CCRYGG 2 cut(s) 92, 297
BstF5I GGATG 4 cut(s) 102, 266, 350, 387
BstFNI CGCG 1 cut(s) 299
BstH2I RGCGCY 1 cut(s) 450
BstHHI GCGC 1 cut(s) 449
BstKTI GATC 3 cut(s) 423, 597, 628
BstMAI GTCTC 1 cut(s) 700
BstMBI GATC 3 cut(s) 420, 594, 625
BstMWI GCNNNNNNNGC 4 cut(s) 261, 569, 745, 858
BstNI CCWGG 1 cut(s) 661
BstPAI GACNNNNGTC 2 cut(s) 513, 692
BstSCI CCNGG 4 cut(s) 156, 449, 659, 733
BstSFI CTRYAG 1 cut(s) 231
BstUI CGCG 1 cut(s) 299
BstV1I GCAGC 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 513
BstX2I RGATCY 2 cut(s) 420, 625
BstYI RGATCY 2 cut(s) 420, 625
BsuRI GGCC 1 cut(s) 152
BtgI CCRYGG 2 cut(s) 92, 297
BtsCI GGATG 4 cut(s) 102, 266, 350, 387
Cac8I GCNNGC 1 cut(s) 132
CciI TCATGA 1 cut(s) 684
CfoI GCGC 1 cut(s) 449
Cfr13I GGNCC 1 cut(s) 150
Cfr42I CCGCGG 1 cut(s) 300
CseI GACGC 1 cut(s) 682
Csp6I GTAC 3 cut(s) 607, 671, 875
CviAII CATG 5 cut(s) 60, 93, 147, 685, 742
CviQI GTAC 3 cut(s) 607, 671, 875
DdeI CTNAG 3 cut(s) 357, 586, 848
DinI GGCGCC 1 cut(s) 448
DpnI GATC 3 cut(s) 422, 596, 627
DpnII GATC 3 cut(s) 420, 594, 625
Eco130I CCWWGG 1 cut(s) 92
Eco24I GRGCYC 2 cut(s) 741, 750
EcoRII CCWGG 1 cut(s) 659
EcoT14I CCWWGG 1 cut(s) 92
EcoT38I GRGCYC 2 cut(s) 741, 750
EgeI GGCGCC 1 cut(s) 448
EheI GGCGCC 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 92
Esp3I CGTCTC 1 cut(s) 700
FaeI CATG 5 cut(s) 63, 96, 150, 688, 745
FalI AAGNNNNNCTT 4 cut(s) 161, 193, 228, 260
FatI CATG 5 cut(s) 59, 92, 146, 684, 741
FauI CCCGC 1 cut(s) 292
FauNDI CATATG 2 cut(s) 574, 611
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 4 cut(s) 109, 273, 357, 374
FriOI GRGCYC 2 cut(s) 741, 750
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 2 cut(s) 102, 131
GlaI GCGC 1 cut(s) 448
GluI GCNGC 1 cut(s) 231
HaeII RGCGCY 1 cut(s) 450
HaeIII GGCC 1 cut(s) 152
HapII CCGG 4 cut(s) 76, 157, 450, 734
HgaI GACGC 1 cut(s) 682
HhaI GCGC 1 cut(s) 449
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 5 cut(s) 63, 96, 150, 688, 745
Hin6I GCGC 1 cut(s) 447
HinP1I GCGC 1 cut(s) 447
HindIII AAGCTT 3 cut(s) 583, 825, 859
HinfI GANTC 5 cut(s) 7, 320, 466, 730, 914
HpaII CCGG 4 cut(s) 76, 157, 450, 734
HphI GGTGA 2 cut(s) 514, 612
Hpy166II GTNNAC 2 cut(s) 505, 875
Hpy188I TCNGA 2 cut(s) 465, 532
Hpy188III TCNNGA 6 cut(s) 76, 178, 324, 342, 685, 727
Hpy8I GTNNAC 2 cut(s) 505, 875
HpyAV CCTTC 3 cut(s) 230, 414, 811
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 8 cut(s) 233, 437, 563, 572, 810, 881, 893, 943
HpyF10VI GCNNNNNNNGC 4 cut(s) 261, 569, 745, 858
HpyF3I CTNAG 3 cut(s) 357, 586, 848
HpySE526I ACGT 1 cut(s) 44
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 5 cut(s) 63, 96, 150, 688, 745
HspAI GCGC 1 cut(s) 447
KasI GGCGCC 1 cut(s) 446
Kpn2I TCCGGA 1 cut(s) 75
KspI CCGCGG 1 cut(s) 300
Kzo9I GATC 3 cut(s) 420, 594, 625
LmnI GCTCC 2 cut(s) 19, 36
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 2 cut(s) 251, 527
MaeI CTAG 2 cut(s) 102, 131
MaeII ACGT 1 cut(s) 44
MalI GATC 3 cut(s) 422, 596, 627
MboI GATC 3 cut(s) 420, 594, 625
MboII GAAGA 5 cut(s) 131, 236, 452, 513, 643
MflI RGATCY 2 cut(s) 420, 625
MhlI GDGCHC 2 cut(s) 741, 750
MluCI AATT 3 cut(s) 71, 543, 558
Mly113I GGCGCC 1 cut(s) 447
MlyI GAGTC 4 cut(s) 16, 329, 724, 908
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 3 cut(s) 27, 203, 316
MroI TCCGGA 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 4 cut(s) 76, 157, 450, 734
MspR9I CCNGG 4 cut(s) 158, 451, 661, 735
Mva1269I GAATGC 1 cut(s) 721
MvaI CCWGG 1 cut(s) 661
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 4 cut(s) 261, 569, 745, 858
NarI GGCGCC 1 cut(s) 447
NciI CCSGG 3 cut(s) 158, 451, 735
NcoI CCATGG 1 cut(s) 92
NdeI CATATG 2 cut(s) 574, 611
NdeII GATC 3 cut(s) 420, 594, 625
NheI GCTAGC 1 cut(s) 130
NlaIII CATG 5 cut(s) 63, 96, 150, 688, 745
NlaIV GGNNCC 3 cut(s) 304, 448, 803
PagI TCATGA 1 cut(s) 684
PctI GAATGC 1 cut(s) 721
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 466
PfoI TCCNGGA 1 cut(s) 156
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 4 cut(s) 15, 328, 724, 908
PluTI GGCGCC 1 cut(s) 450
PpsI GAGTC 4 cut(s) 15, 328, 724, 908
PshAI GACNNNNGTC 2 cut(s) 513, 692
PsiI TTATAA 2 cut(s) 416, 857
Psp6I CCWGG 1 cut(s) 659
PspGI CCWGG 1 cut(s) 659
PspN4I GGNNCC 3 cut(s) 304, 448, 803
PspPI GGNCC 1 cut(s) 150
PstI CTGCAG 1 cut(s) 235
PsuI RGATCY 2 cut(s) 420, 625
RsaI GTAC 3 cut(s) 608, 672, 876
RsaNI GTAC 3 cut(s) 607, 671, 875
RseI CAYNNNNRTG 1 cut(s) 602
SacII CCGCGG 1 cut(s) 300
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 3 cut(s) 420, 594, 625
Sau96I GGNCC 1 cut(s) 150
ScaI AGTACT 1 cut(s) 672
SchI GAGTC 4 cut(s) 16, 329, 724, 908
ScrFI CCNGG 4 cut(s) 158, 451, 661, 735
SduI GDGCHC 2 cut(s) 741, 750
SfaNI GCATC 2 cut(s) 251, 527
SfcI CTRYAG 1 cut(s) 231
SfoI GGCGCC 1 cut(s) 448
Sfr303I CCGCGG 1 cut(s) 300
SgrBI CCGCGG 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 602
Sse9I AATT 3 cut(s) 71, 543, 558
SsiI CCGC 2 cut(s) 297, 299
SspDI GGCGCC 1 cut(s) 446
SspMI CTAG 2 cut(s) 102, 131
StyD4I CCNGG 4 cut(s) 156, 449, 659, 733
StyI CCWWGG 1 cut(s) 92
TaiI ACGT 1 cut(s) 47
TaqI TCGA 2 cut(s) 86, 308
TasI AATT 3 cut(s) 71, 543, 558
TatI WGTACW 3 cut(s) 606, 670, 874
TfiI GAWTC 1 cut(s) 466
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 7 cut(s) 203, 234, 370, 481, 536, 628, 643
TspGWI ACGGA 1 cut(s) 180
XapI RAATTY 1 cut(s) 543
XcmI CCANNNNNNNNNTGG 1 cut(s) 77
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 2 cut(s) 102, 131
ZrmI AGTACT 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.