Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001865

Physical Location & Seq

Genomic Coordinates Forward (+)

4636008 .. 4640848

Gene Structure 4841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG057200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGAGAGTCCTGCTCCAACAGGCAACAATGAGAGGAGCAACACGTTCAAAGTTGATACATGGTTTAGCCAATTCCGGAATGGCTCGAATCCATGGATGGCTAGATATGTTTATGGTCTTATGTTTCTGCTAGCAAATCTTCTGGCATGGGCCGTCCGGGATTACGGAAAGAGCTTCTTGATGGAGATGAAAAGGTTAGAAAGATGTGGAGGTCAAAATGAATGTTTGGCTGCAGAAGGTGTTCTTCGTGTGAGCTTGGGATGCTTTTTGTTTTATTTCTGTATGTTTCTTTCAACTACGGGTGCCTCGAAGTTGAATGTGTCCAGAGATACTTGGCAATCTGGATGGTGGTCTGCTAAGATTGTCCTGTGGATTGTTTTCATTATCATCCCCTTTTTGCTTCCTTCGGCTATTATAAAGATCTATGGTGTGGTTGCACATTTTGGCGCCGGGGTATTTCTTCTGATTCAGCTAATAAGCATAATCAGTTTCATTAGATGGGTGAACGATTGCTGTCAGTATTCTAAATCAGAAAGATGCCAAATTCATTCAATGCTAATTGCAACAACTGCATATGTTGTAAGCTTAGTGGGGATCATAATGATGTACATATGGTATTCACCAGATCCATCTTGCTTCATCAACATTTTCTTCATTACCTGGACATTAGTACTACTTCAACTCATGACGAGCGTCTCTCTCCACCCAAAAGTGAATGCTGGTATCTTGACTCCGGGGCTCATGGGGCTCTATATAGTATTTATCTGCTGGTTTGCCATTAGAAGTGAGCCAGTGGCAGGGAACCCTTGCAACAGGAAGGCAGAAGCTTCACAGCATAGGGATTGGCTCAGCATTATAAGCTTTGTTATTGGTGTACTTGCAATCATTATTGCAACATTTTCAACAGGCATAGACTCCAAATGCTTTCAGACACTGCAGTTCAAGAAGGACGAGACTGAATCCGAGGATGACGTTCCATATGGCTATGGCTTCTTCCATTTCGTTTTCGCTACAGGAGCAATGTATTTTGCAATGCTATTGATCAGTTGGAATACTACTAATCACACCATGGAAAAGTGGACAATTGATGTGGGCTGGACTAGCACTTGGGTCAGAATCGTGAACGAGTGGATCGCTGTCTGTGTGTATTTGTGGATGCTGGTTGGTCCAATTATATGGAAGTGTAGACAAACAGCTGAATCCGTCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015194 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015825 GO:0015849 GO:0022857 GO:0022889 GO:0032329 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Serinc

Protein Analysis

403

Amino Acids

45.96

Weight (kDa)

8.17

Isoelectric Point (pI)

25.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serinc	PF03348	22 - 314	3.2e-52	Serine incorporator (Serinc)
Serinc	PF03348	316 - 395	3.7e-19	Serine incorporator (Serinc)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24460 AT3G24460 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345
fragaria_vesca	FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181
malus_domestica	MD02G1063500.v1.1 MD02G1063900.v1.1 MD15G1188500.v1.1
prunus_persica	Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1
pyrus_communis	pycom02g04240 pycom02g04260 pycom15g16900
rosa_chinensis	RchiOBHm_Chr2g0090921
rosa_laevigata	RLG00000016155
rosa_roxburghii	Rroxscaffold_2G00150750 Rroxscaffold_6G00414260
rosa_rugosa	Rorug02G0010900 Rorug02G0011000 Rorug02G0011000 Rorug02G0011000 Rorug02G0011100 Rorug02G0011100
rosa_samantha	Rh2AG057200 Rh2BG055700 Rh2CG058000 Rh2DG056600
rosa_wichuraiana	Rw2G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	416, 857
AccB1I	GGYRCC	2 cut(s)	302, 446
AccI	GTMKAC	1 cut(s)	1186
AccIII	TCCGGA	1 cut(s)	75
AclWI	GGATC	3 cut(s)	602, 620, 1139
AcsI	RAATTY	1 cut(s)	543
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	3 cut(s)	608, 672, 876
AfiI	CCNNNNNNNGG	1 cut(s)	797
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	7 cut(s)	49, 294, 316, 552, 680, 903, 943
AjnI	CCWGG	1 cut(s)	659
AluBI	AGCT	7 cut(s)	174, 255, 472, 585, 827, 861, 1196
AluI	AGCT	7 cut(s)	174, 255, 472, 585, 827, 861, 1196
Alw26I	GTCTC	2 cut(s)	700, 947
AlwI	GGATC	3 cut(s)	602, 620, 1139
AlwNI	CAGNNNCTG	1 cut(s)	934
Aor13HI	TCCGGA	1 cut(s)	75
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	543
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	2 cut(s)	150, 1166
AsuC2I	CCSGG	3 cut(s)	158, 451, 735
AsuHPI	GGTGA	2 cut(s)	514, 612
AsuNHI	GCTAGC	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	1166
BanI	GGYRCC	2 cut(s)	302, 446
BanII	GRGCYC	2 cut(s)	741, 750
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	5 cut(s)	91, 175, 339, 492, 637
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	661
BclI	TGATCA	1 cut(s)	1041
BcnI	CCSGG	3 cut(s)	158, 451, 735
BcoDI	GTCTC	2 cut(s)	700, 947
BfaI	CTAG	3 cut(s)	102, 131, 1101
BfmI	CTRYAG	3 cut(s)	231, 935, 1011
BfoI	RGCGCY	1 cut(s)	450
BglII	AGATCT	1 cut(s)	420
BisI	GCNGC	1 cut(s)	231
BlpI	GCTNAGC	1 cut(s)	848
BlsI	GCNGC	1 cut(s)	232
BmcAI	AGTACT	1 cut(s)	672
Bme1390I	CCNGG	4 cut(s)	158, 451, 661, 735
Bme18I	GGWCC	1 cut(s)	1166
BmgT120I	GGNCC	2 cut(s)	150, 1166
BmiI	GGNNCC	3 cut(s)	304, 448, 803
BmrFI	CCNGG	4 cut(s)	158, 451, 661, 735
BmsI	GCATC	3 cut(s)	251, 527, 1146
BmtI	GCTAGC	1 cut(s)	134
BoxI	GACNNNNGTC	1 cut(s)	692
BplI	GAGNNNNNCTC	3 cut(s)	30, 682, 714
Bpu1102I	GCTNAGC	1 cut(s)	848
BpuMI	CCSGG	3 cut(s)	158, 451, 735
BsaHI	GRCGYC	1 cut(s)	447
BsaJI	CCNNGG	5 cut(s)	92, 450, 734, 963, 1068
BsaWI	WCCGGW	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	797
Bse1I	ACTGG	1 cut(s)	791
Bse3DI	GCAATG	2 cut(s)	1026, 1038
BseAI	TCCGGA	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	661
BseDI	CCNNGG	5 cut(s)	92, 450, 734, 963, 1068
BseGI	GGATG	6 cut(s)	102, 266, 350, 387, 973, 1161
BseLI	CCNNNNNNNGG	1 cut(s)	797
BseMI	GCAATG	2 cut(s)	1026, 1038
BseMII	CTCAG	1 cut(s)	862
BseNI	ACTGG	1 cut(s)	791
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	217
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	2 cut(s)	302, 446
BsiSI	CCGG	4 cut(s)	76, 157, 450, 734
BslI	CCNNNNNNNGG	1 cut(s)	797
BsmAI	GTCTC	2 cut(s)	700, 947
BsmBI	CGTCTC	1 cut(s)	700
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	741, 750
Bsp13I	TCCGGA	1 cut(s)	75
Bsp1407I	TGTACA	1 cut(s)	606
Bsp143I	GATC	5 cut(s)	420, 594, 625, 1041, 1131
Bsp1720I	GCTNAGC	1 cut(s)	848
Bsp19I	CCATGG	2 cut(s)	92, 1068
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	861
BspEI	TCCGGA	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	684
BspLI	GGNNCC	3 cut(s)	304, 448, 803
BspMAI	CTGCAG	2 cut(s)	235, 939
BspOI	GCTAGC	1 cut(s)	134
BspPI	GGATC	3 cut(s)	602, 620, 1139
BspT107I	GGYRCC	2 cut(s)	302, 446
BsrDI	GCAATG	2 cut(s)	1026, 1038
BsrGI	TGTACA	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	791
BssECI	CCNNGG	5 cut(s)	92, 450, 734, 963, 1068
BssMI	GATC	5 cut(s)	420, 594, 625, 1041, 1131
BssNI	GRCGYC	1 cut(s)	447
BssT1I	CCWWGG	2 cut(s)	92, 1068
Bst2UI	CCWGG	1 cut(s)	661
BstACI	GRCGYC	1 cut(s)	447
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstAUI	TGTACA	1 cut(s)	606
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	3 cut(s)	357, 586, 848
BstDSI	CCRYGG	2 cut(s)	92, 1068
BstF5I	GGATG	6 cut(s)	102, 266, 350, 387, 973, 1161
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	5 cut(s)	423, 597, 628, 1044, 1134
BstMAI	GTCTC	2 cut(s)	700, 947
BstMBI	GATC	5 cut(s)	420, 594, 625, 1041, 1131
BstMWI	GCNNNNNNNGC	6 cut(s)	261, 569, 745, 858, 1016, 1101
BstNI	CCWGG	1 cut(s)	661
BstPAI	GACNNNNGTC	1 cut(s)	692
BstSCI	CCNGG	4 cut(s)	156, 449, 659, 733
BstSFI	CTRYAG	3 cut(s)	231, 935, 1011
BstV1I	GCAGC	1 cut(s)	217
BstX2I	RGATCY	2 cut(s)	420, 625
BstXI	CCANNNNNNTGG	1 cut(s)	1176
BstYI	RGATCY	2 cut(s)	420, 625
BsuRI	GGCC	1 cut(s)	152
BtgI	CCRYGG	2 cut(s)	92, 1068
BtsCI	GGATG	6 cut(s)	102, 266, 350, 387, 973, 1161
BtsI	GCAGTG	1 cut(s)	932
BtsIMutI	CAGTG	2 cut(s)	798, 932
Cac8I	GCNNGC	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	934
CciI	TCATGA	1 cut(s)	684
CfoI	GCGC	1 cut(s)	449
Cfr13I	GGNCC	2 cut(s)	150, 1166
CseI	GACGC	1 cut(s)	682
Csp6I	GTAC	3 cut(s)	607, 671, 875
CspCI	CAANNNNNGTGG	2 cut(s)	1071, 1106
CviAII	CATG	6 cut(s)	60, 93, 147, 685, 742, 1069
CviQI	GTAC	3 cut(s)	607, 671, 875
DdeI	CTNAG	3 cut(s)	357, 586, 848
DinI	GGCGCC	1 cut(s)	448
DpnI	GATC	5 cut(s)	422, 596, 627, 1043, 1133
DpnII	GATC	5 cut(s)	420, 594, 625, 1041, 1131
Eco130I	CCWWGG	2 cut(s)	92, 1068
Eco24I	GRGCYC	2 cut(s)	741, 750
Eco47I	GGWCC	1 cut(s)	1166
EcoRII	CCWGG	1 cut(s)	659
EcoT14I	CCWWGG	2 cut(s)	92, 1068
EcoT38I	GRGCYC	2 cut(s)	741, 750
EgeI	GGCGCC	1 cut(s)	448
EheI	GGCGCC	1 cut(s)	448
ErhI	CCWWGG	2 cut(s)	92, 1068
Esp3I	CGTCTC	1 cut(s)	700
FaeI	CATG	6 cut(s)	63, 96, 150, 688, 745, 1072
FalI	AAGNNNNNCTT	4 cut(s)	161, 193, 228, 260
FatI	CATG	6 cut(s)	59, 92, 146, 684, 741, 1068
FauNDI	CATATG	3 cut(s)	574, 611, 979
FbaI	TGATCA	1 cut(s)	1041
FblI	GTMKAC	1 cut(s)	1186
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	6 cut(s)	109, 273, 357, 374, 980, 1168
FriOI	GRGCYC	2 cut(s)	741, 750
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	3 cut(s)	102, 131, 1101
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	4 cut(s)	76, 157, 450, 734
HgaI	GACGC	1 cut(s)	682
HhaI	GCGC	1 cut(s)	449
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	6 cut(s)	63, 96, 150, 688, 745, 1072
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HindIII	AAGCTT	3 cut(s)	583, 825, 859
HinfI	GANTC	8 cut(s)	7, 88, 466, 730, 914, 959, 1116, 1199
HpaII	CCGG	4 cut(s)	76, 157, 450, 734
HphI	GGTGA	2 cut(s)	514, 612
Hpy166II	GTNNAC	5 cut(s)	505, 875, 1080, 1123, 1187
Hpy188I	TCNGA	5 cut(s)	465, 532, 930, 964, 1115
Hpy188III	TCNNGA	8 cut(s)	76, 178, 324, 342, 685, 727, 943, 1120
Hpy8I	GTNNAC	5 cut(s)	505, 875, 1080, 1123, 1187
Hpy99I	CGWCG	1 cut(s)	1208
HpyAV	CCTTC	4 cut(s)	230, 414, 811, 940
HpyCH4IV	ACGT	2 cut(s)	44, 972
HpyCH4V	TGCA	9 cut(s)	233, 437, 563, 572, 810, 881, 893, 937, 1031
HpyF10VI	GCNNNNNNNGC	6 cut(s)	261, 569, 745, 858, 1016, 1101
HpyF3I	CTNAG	3 cut(s)	357, 586, 848
HpySE526I	ACGT	2 cut(s)	44, 972
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	6 cut(s)	63, 96, 150, 688, 745, 1072
HspAI	GCGC	1 cut(s)	447
KasI	GGCGCC	1 cut(s)	446
Kpn2I	TCCGGA	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	1041
Kzo9I	GATC	5 cut(s)	420, 594, 625, 1041, 1131
LmnI	GCTCC	3 cut(s)	19, 36, 1016
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	3 cut(s)	251, 527, 1146
MaeI	CTAG	3 cut(s)	102, 131, 1101
MaeII	ACGT	2 cut(s)	44, 972
MalI	GATC	5 cut(s)	422, 596, 627, 1043, 1133
MboI	GATC	5 cut(s)	420, 594, 625, 1041, 1131
MboII	GAAGA	5 cut(s)	131, 236, 452, 643, 985
MfeI	CAATTG	1 cut(s)	1083
MflI	RGATCY	2 cut(s)	420, 625
MhlI	GDGCHC	2 cut(s)	741, 750
MluCI	AATT	5 cut(s)	71, 543, 558, 1083, 1170
Mly113I	GGCGCC	1 cut(s)	447
MlyI	GAGTC	3 cut(s)	16, 724, 908
MmeI	TCCRAC	2 cut(s)	41, 1028
MnlI	CCTC	4 cut(s)	27, 203, 316, 958
MroI	TCCGGA	1 cut(s)	75
MroXI	GAANNNNTTC	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	602
MspA1I	CMGCKG	1 cut(s)	1196
MspI	CCGG	4 cut(s)	76, 157, 450, 734
MspR9I	CCNGG	4 cut(s)	158, 451, 661, 735
MunI	CAATTG	1 cut(s)	1083
Mva1269I	GAATGC	1 cut(s)	721
MvaI	CCWGG	1 cut(s)	661
MwoI	GCNNNNNNNGC	6 cut(s)	261, 569, 745, 858, 1016, 1101
NarI	GGCGCC	1 cut(s)	447
NciI	CCSGG	3 cut(s)	158, 451, 735
NcoI	CCATGG	2 cut(s)	92, 1068
NdeI	CATATG	3 cut(s)	574, 611, 979
NdeII	GATC	5 cut(s)	420, 594, 625, 1041, 1131
NheI	GCTAGC	1 cut(s)	130
NlaIII	CATG	6 cut(s)	63, 96, 150, 688, 745, 1072
NlaIV	GGNNCC	3 cut(s)	304, 448, 803
PagI	TCATGA	1 cut(s)	684
PcsI	WCGNNNNNNNCGW	1 cut(s)	305
PctI	GAATGC	1 cut(s)	721
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	5 cut(s)	88, 466, 959, 1116, 1199
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	3 cut(s)	15, 724, 908
PluTI	GGCGCC	1 cut(s)	450
PpsI	GAGTC	3 cut(s)	15, 724, 908
PshAI	GACNNNNGTC	1 cut(s)	692
PsiI	TTATAA	2 cut(s)	416, 857
Psp6I	CCWGG	1 cut(s)	659
PspGI	CCWGG	1 cut(s)	659
PspN4I	GGNNCC	3 cut(s)	304, 448, 803
PspPI	GGNCC	2 cut(s)	150, 1166
PstI	CTGCAG	2 cut(s)	235, 939
PstNI	CAGNNNCTG	1 cut(s)	934
PsuI	RGATCY	2 cut(s)	420, 625
PvuII	CAGCTG	1 cut(s)	1196
RsaI	GTAC	3 cut(s)	608, 672, 876
RsaNI	GTAC	3 cut(s)	607, 671, 875
RseI	CAYNNNNRTG	1 cut(s)	602
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	5 cut(s)	420, 594, 625, 1041, 1131
Sau96I	GGNCC	2 cut(s)	150, 1166
ScaI	AGTACT	1 cut(s)	672
SchI	GAGTC	3 cut(s)	16, 724, 908
ScrFI	CCNGG	4 cut(s)	158, 451, 661, 735
SduI	GDGCHC	2 cut(s)	741, 750
SfaNI	GCATC	3 cut(s)	251, 527, 1146
SfcI	CTRYAG	3 cut(s)	231, 935, 1011
SfoI	GGCGCC	1 cut(s)	448
SinI	GGWCC	1 cut(s)	1166
SmiMI	CAYNNNNRTG	1 cut(s)	602
Sse9I	AATT	5 cut(s)	71, 543, 558, 1083, 1170
SspDI	GGCGCC	1 cut(s)	446
SspMI	CTAG	3 cut(s)	102, 131, 1101
StyD4I	CCNGG	4 cut(s)	156, 449, 659, 733
StyI	CCWWGG	2 cut(s)	92, 1068
TaiI	ACGT	2 cut(s)	47, 975
TaqI	TCGA	2 cut(s)	86, 308
TasI	AATT	5 cut(s)	71, 543, 558, 1083, 1170
TatI	WGTACW	3 cut(s)	606, 670, 874
TfiI	GAWTC	5 cut(s)	88, 466, 959, 1116, 1199
TscAI	CASTG	2 cut(s)	798, 939
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	7 cut(s)	203, 234, 370, 481, 536, 628, 643
TspGWI	ACGGA	2 cut(s)	180, 1192
TspRI	CASTG	2 cut(s)	798, 939
VpaK11BI	GGWCC	1 cut(s)	1166
XapI	RAATTY	1 cut(s)	543
XcmI	CCANNNNNNNNNTGG	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	1186
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	3 cut(s)	102, 131, 1101
ZrmI	AGTACT	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.