Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001865

Physical Location & Seq

Genomic Coordinates Forward (+)

4683788 .. 4688471

Gene Structure 4684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46612

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGAGAGTCCTGCTCCAACAGGCAACAATGAGAGGAGCAACACGTTCAAAGTTGATACATGGTTTAGCCAATTCCGGAATGGCTCGAATCCATGGATGGCTAGATATGTTTATGGTCTTATGTTTCTGCTAGCAAATCTTCTGGCATGGGCCGTCCGGGATTACGGAAAGAGCTTCTTGATGGAGATGAAAAGGTTAGAAAGATGTGGAGGTCAAAATGAATGTTTGGCTGCAGAAGGTGTTCTTCGTGTGAGCTTGGGATGCTTTTTGTTTTATTTCTCTATGTTTCTTTCAACTGCGGGTGCCTCGAAGTTGAATGAGTCCAGAGATACTTGGCAATCTGGATGGTGGTCTGCTAAGATTGTCCTGTGGATTGTTTTCATTATCATCCCCTTTTTGCTTCCTTCGGCTATTATAAAGATCTATGGTGTGGTTGCACATTTTGGCGCCGGGGTATTTCTTCTGATTCAGCTAATAAGCATAATCAGTTTCATTAGATGGGTGAACGATTGCTGTCAGTATTCTAAATCAGAAAGATGCCAAATTCATTCAATGCTAATTGCAACAACTGCATATGTTGTAAGCTTAGTGGGGATCATAATGATGTACATATGGTATTCACCAGATCCATCTTGCTTCATCAACATTTTCTTCATTACCTGGACATTAGTACTACTTCAACTCATGACGAGCGTCTCCCTCCACCCAAAAGTTAATGCTGGTATCTTGACTCCGGGGCTCATGGGGCTCTATATAGTATTTATCTGCTGGTTTGCCATTAGAAGTGAGCCAGTGGCAGGGAACCCTTGCAACAGGAAGGCAGAAGCTTCACAGCATAGGGATTGGCTCAGCATTATAAGCTTTGTTATTGGTGTACTTGCAATCGTTATTGCAACATTTTCAACAGGCATAGACTCCAAATGCTTTCAGTTCAAGAAGGACGAGACTGAATCCGAGGATGACGTTCCATATGGCTATGGCTTCTTCCATTTCGTTTTCGCTACAGGAGCAATGTATTTTGCAATGCTATTGATCAGTTGGAATACTACTAATCACACCATGGAAAAGTGGACAATTGATGTGGGCTGGACTAGCACTTGGGTCAGAATCGTGAACGAGTGGATCGCTGTCTGTGTGTATTTGTGGATGCTGGTTGGTCCAATTATATGGAAGAGTAGACAAACAGCTCAATCCGTCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015194 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015825 GO:0015849 GO:0022857 GO:0022889 GO:0032329 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Serinc

Protein Analysis

400

Amino Acids

45.57

Weight (kDa)

8.24

Isoelectric Point (pI)

26.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serinc	PF03348	22 - 315	3.7e-53	Serine incorporator (Serinc)
Serinc	PF03348	313 - 393	1.7e-19	Serine incorporator (Serinc)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24460 AT3G24460 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345
fragaria_vesca	FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181
malus_domestica	MD02G1063500.v1.1 MD02G1063900.v1.1 MD15G1188500.v1.1
prunus_persica	Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1
pyrus_communis	pycom02g04240 pycom02g04260 pycom15g16900
rosa_chinensis	RchiOBHm_Chr2g0090921
rosa_laevigata	RLG00000016155
rosa_roxburghii	Rroxscaffold_2G00150750 Rroxscaffold_6G00414260
rosa_rugosa	Rorug02G0010900 Rorug02G0011000 Rorug02G0011000 Rorug02G0011000 Rorug02G0011100 Rorug02G0011100
rosa_samantha	Rh2AG057200 Rh2BG055700 Rh2CG058000 Rh2DG056600
rosa_wichuraiana	Rw2G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	416, 857
AccB1I	GGYRCC	2 cut(s)	302, 446
AccI	GTMKAC	1 cut(s)	1177
AccIII	TCCGGA	1 cut(s)	75
AciI	CCGC	1 cut(s)	299
AclWI	GGATC	3 cut(s)	602, 620, 1130
AcsI	RAATTY	1 cut(s)	543
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	3 cut(s)	608, 672, 876
AfiI	CCNNNNNNNGG	1 cut(s)	797
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	7 cut(s)	49, 294, 316, 552, 680, 903, 934
AjnI	CCWGG	1 cut(s)	659
AluBI	AGCT	7 cut(s)	174, 255, 472, 585, 827, 861, 1187
AluI	AGCT	7 cut(s)	174, 255, 472, 585, 827, 861, 1187
Alw26I	GTCTC	2 cut(s)	700, 938
AlwI	GGATC	3 cut(s)	602, 620, 1130
Aor13HI	TCCGGA	1 cut(s)	75
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	543
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	2 cut(s)	150, 1157
AsuC2I	CCSGG	3 cut(s)	158, 451, 735
AsuHPI	GGTGA	2 cut(s)	514, 612
AsuNHI	GCTAGC	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	1157
BanI	GGYRCC	2 cut(s)	302, 446
BanII	GRGCYC	2 cut(s)	741, 750
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	5 cut(s)	91, 175, 339, 492, 637
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	661
BclI	TGATCA	1 cut(s)	1032
BcnI	CCSGG	3 cut(s)	158, 451, 735
BcoDI	GTCTC	2 cut(s)	700, 938
BfaI	CTAG	3 cut(s)	102, 131, 1092
BfmI	CTRYAG	2 cut(s)	231, 1002
BfoI	RGCGCY	1 cut(s)	450
BglII	AGATCT	1 cut(s)	420
BisI	GCNGC	1 cut(s)	231
BlpI	GCTNAGC	1 cut(s)	848
BlsI	GCNGC	1 cut(s)	232
BmcAI	AGTACT	1 cut(s)	672
Bme1390I	CCNGG	4 cut(s)	158, 451, 661, 735
Bme18I	GGWCC	1 cut(s)	1157
BmgT120I	GGNCC	2 cut(s)	150, 1157
BmiI	GGNNCC	3 cut(s)	304, 448, 803
BmrFI	CCNGG	4 cut(s)	158, 451, 661, 735
BmsI	GCATC	3 cut(s)	251, 527, 1137
BmtI	GCTAGC	1 cut(s)	134
BoxI	GACNNNNGTC	1 cut(s)	692
BplI	GAGNNNNNCTC	1 cut(s)	30
Bpu1102I	GCTNAGC	1 cut(s)	848
BpuMI	CCSGG	3 cut(s)	158, 451, 735
BsaHI	GRCGYC	1 cut(s)	447
BsaJI	CCNNGG	5 cut(s)	92, 450, 734, 954, 1059
BsaWI	WCCGGW	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	797
Bse1I	ACTGG	1 cut(s)	791
Bse3DI	GCAATG	2 cut(s)	1017, 1029
BseAI	TCCGGA	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	661
BseDI	CCNNGG	5 cut(s)	92, 450, 734, 954, 1059
BseGI	GGATG	6 cut(s)	102, 266, 350, 387, 964, 1152
BseLI	CCNNNNNNNGG	1 cut(s)	797
BseMI	GCAATG	2 cut(s)	1017, 1029
BseMII	CTCAG	1 cut(s)	862
BseNI	ACTGG	1 cut(s)	791
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	217
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	2 cut(s)	302, 446
BsiSI	CCGG	4 cut(s)	76, 157, 450, 734
BslI	CCNNNNNNNGG	1 cut(s)	797
BsmAI	GTCTC	2 cut(s)	700, 938
BsmBI	CGTCTC	1 cut(s)	700
BsnI	GGCC	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	741, 750
Bsp13I	TCCGGA	1 cut(s)	75
Bsp1407I	TGTACA	1 cut(s)	606
Bsp143I	GATC	5 cut(s)	420, 594, 625, 1032, 1122
Bsp1720I	GCTNAGC	1 cut(s)	848
Bsp19I	CCATGG	2 cut(s)	92, 1059
BspACI	CCGC	1 cut(s)	299
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	861
BspEI	TCCGGA	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	684
BspLI	GGNNCC	3 cut(s)	304, 448, 803
BspMAI	CTGCAG	1 cut(s)	235
BspOI	GCTAGC	1 cut(s)	134
BspPI	GGATC	3 cut(s)	602, 620, 1130
BspT107I	GGYRCC	2 cut(s)	302, 446
BsrDI	GCAATG	2 cut(s)	1017, 1029
BsrGI	TGTACA	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	791
BssECI	CCNNGG	5 cut(s)	92, 450, 734, 954, 1059
BssMI	GATC	5 cut(s)	420, 594, 625, 1032, 1122
BssNI	GRCGYC	1 cut(s)	447
BssT1I	CCWWGG	2 cut(s)	92, 1059
Bst2UI	CCWGG	1 cut(s)	661
Bst6I	CTCTTC	1 cut(s)	1166
BstACI	GRCGYC	1 cut(s)	447
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstAUI	TGTACA	1 cut(s)	606
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	3 cut(s)	357, 586, 848
BstDSI	CCRYGG	2 cut(s)	92, 1059
BstF5I	GGATG	6 cut(s)	102, 266, 350, 387, 964, 1152
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	5 cut(s)	423, 597, 628, 1035, 1125
BstMAI	GTCTC	2 cut(s)	700, 938
BstMBI	GATC	5 cut(s)	420, 594, 625, 1032, 1122
BstMWI	GCNNNNNNNGC	6 cut(s)	261, 569, 745, 858, 1007, 1092
BstNI	CCWGG	1 cut(s)	661
BstPAI	GACNNNNGTC	1 cut(s)	692
BstSCI	CCNGG	4 cut(s)	156, 449, 659, 733
BstSFI	CTRYAG	2 cut(s)	231, 1002
BstV1I	GCAGC	1 cut(s)	217
BstX2I	RGATCY	2 cut(s)	420, 625
BstXI	CCANNNNNNTGG	1 cut(s)	1167
BstYI	RGATCY	2 cut(s)	420, 625
BsuRI	GGCC	1 cut(s)	152
BtgI	CCRYGG	2 cut(s)	92, 1059
BtsCI	GGATG	6 cut(s)	102, 266, 350, 387, 964, 1152
BtsIMutI	CAGTG	1 cut(s)	798
Cac8I	GCNNGC	1 cut(s)	132
CciI	TCATGA	1 cut(s)	684
CfoI	GCGC	1 cut(s)	449
Cfr13I	GGNCC	2 cut(s)	150, 1157
CseI	GACGC	1 cut(s)	682
Csp6I	GTAC	3 cut(s)	607, 671, 875
CspCI	CAANNNNNGTGG	2 cut(s)	1062, 1097
CviAII	CATG	6 cut(s)	60, 93, 147, 685, 742, 1060
CviQI	GTAC	3 cut(s)	607, 671, 875
DdeI	CTNAG	3 cut(s)	357, 586, 848
DinI	GGCGCC	1 cut(s)	448
DpnI	GATC	5 cut(s)	422, 596, 627, 1034, 1124
DpnII	GATC	5 cut(s)	420, 594, 625, 1032, 1122
Eam1104I	CTCTTC	1 cut(s)	1166
EarI	CTCTTC	1 cut(s)	1166
Eco130I	CCWWGG	2 cut(s)	92, 1059
Eco24I	GRGCYC	2 cut(s)	741, 750
Eco47I	GGWCC	1 cut(s)	1157
EcoRII	CCWGG	1 cut(s)	659
EcoT14I	CCWWGG	2 cut(s)	92, 1059
EcoT38I	GRGCYC	2 cut(s)	741, 750
EgeI	GGCGCC	1 cut(s)	448
EheI	GGCGCC	1 cut(s)	448
ErhI	CCWWGG	2 cut(s)	92, 1059
Esp3I	CGTCTC	1 cut(s)	700
FaeI	CATG	6 cut(s)	63, 96, 150, 688, 745, 1063
FalI	AAGNNNNNCTT	4 cut(s)	161, 193, 228, 260
FatI	CATG	6 cut(s)	59, 92, 146, 684, 741, 1059
FauI	CCCGC	1 cut(s)	292
FauNDI	CATATG	3 cut(s)	574, 611, 970
FbaI	TGATCA	1 cut(s)	1032
FblI	GTMKAC	1 cut(s)	1177
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	6 cut(s)	109, 273, 357, 374, 971, 1159
FriOI	GRGCYC	2 cut(s)	741, 750
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	3 cut(s)	102, 131, 1092
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	4 cut(s)	76, 157, 450, 734
HgaI	GACGC	1 cut(s)	682
HhaI	GCGC	1 cut(s)	449
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	6 cut(s)	63, 96, 150, 688, 745, 1063
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HindIII	AAGCTT	3 cut(s)	583, 825, 859
HinfI	GANTC	8 cut(s)	7, 88, 320, 466, 730, 914, 950, 1107
HpaII	CCGG	4 cut(s)	76, 157, 450, 734
HphI	GGTGA	2 cut(s)	514, 612
Hpy166II	GTNNAC	5 cut(s)	505, 875, 1071, 1114, 1178
Hpy188I	TCNGA	4 cut(s)	465, 532, 955, 1106
Hpy188III	TCNNGA	8 cut(s)	76, 178, 324, 342, 685, 727, 934, 1111
Hpy8I	GTNNAC	5 cut(s)	505, 875, 1071, 1114, 1178
Hpy99I	CGWCG	1 cut(s)	1199
HpyAV	CCTTC	4 cut(s)	230, 414, 811, 931
HpyCH4IV	ACGT	2 cut(s)	44, 963
HpyCH4V	TGCA	8 cut(s)	233, 437, 563, 572, 810, 881, 893, 1022
HpyF10VI	GCNNNNNNNGC	6 cut(s)	261, 569, 745, 858, 1007, 1092
HpyF3I	CTNAG	3 cut(s)	357, 586, 848
HpySE526I	ACGT	2 cut(s)	44, 963
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	6 cut(s)	63, 96, 150, 688, 745, 1063
HspAI	GCGC	1 cut(s)	447
KasI	GGCGCC	1 cut(s)	446
Kpn2I	TCCGGA	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	1032
Kzo9I	GATC	5 cut(s)	420, 594, 625, 1032, 1122
LmnI	GCTCC	3 cut(s)	19, 36, 1007
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	3 cut(s)	251, 527, 1137
MaeI	CTAG	3 cut(s)	102, 131, 1092
MaeII	ACGT	2 cut(s)	44, 963
MalI	GATC	5 cut(s)	422, 596, 627, 1034, 1124
MboI	GATC	5 cut(s)	420, 594, 625, 1032, 1122
MboII	GAAGA	6 cut(s)	131, 236, 452, 643, 976, 1183
MfeI	CAATTG	1 cut(s)	1074
MflI	RGATCY	2 cut(s)	420, 625
MhlI	GDGCHC	2 cut(s)	741, 750
MluCI	AATT	5 cut(s)	71, 543, 558, 1074, 1161
Mly113I	GGCGCC	1 cut(s)	447
MlyI	GAGTC	4 cut(s)	16, 329, 724, 908
MmeI	TCCRAC	2 cut(s)	41, 1019
MnlI	CCTC	5 cut(s)	27, 203, 316, 710, 949
MroI	TCCGGA	1 cut(s)	75
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	1 cut(s)	714
MslI	CAYNNNNRTG	1 cut(s)	602
MspI	CCGG	4 cut(s)	76, 157, 450, 734
MspR9I	CCNGG	4 cut(s)	158, 451, 661, 735
MunI	CAATTG	1 cut(s)	1074
MvaI	CCWGG	1 cut(s)	661
MwoI	GCNNNNNNNGC	6 cut(s)	261, 569, 745, 858, 1007, 1092
NarI	GGCGCC	1 cut(s)	447
NciI	CCSGG	3 cut(s)	158, 451, 735
NcoI	CCATGG	2 cut(s)	92, 1059
NdeI	CATATG	3 cut(s)	574, 611, 970
NdeII	GATC	5 cut(s)	420, 594, 625, 1032, 1122
NheI	GCTAGC	1 cut(s)	130
NlaIII	CATG	6 cut(s)	63, 96, 150, 688, 745, 1063
NlaIV	GGNNCC	3 cut(s)	304, 448, 803
PagI	TCATGA	1 cut(s)	684
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	4 cut(s)	88, 466, 950, 1107
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	4 cut(s)	15, 328, 724, 908
PluTI	GGCGCC	1 cut(s)	450
PpsI	GAGTC	4 cut(s)	15, 328, 724, 908
PshAI	GACNNNNGTC	1 cut(s)	692
PsiI	TTATAA	2 cut(s)	416, 857
Psp6I	CCWGG	1 cut(s)	659
PspGI	CCWGG	1 cut(s)	659
PspN4I	GGNNCC	3 cut(s)	304, 448, 803
PspPI	GGNCC	2 cut(s)	150, 1157
PstI	CTGCAG	1 cut(s)	235
PsuI	RGATCY	2 cut(s)	420, 625
RsaI	GTAC	3 cut(s)	608, 672, 876
RsaNI	GTAC	3 cut(s)	607, 671, 875
RseI	CAYNNNNRTG	1 cut(s)	602
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	5 cut(s)	420, 594, 625, 1032, 1122
Sau96I	GGNCC	2 cut(s)	150, 1157
ScaI	AGTACT	1 cut(s)	672
SchI	GAGTC	4 cut(s)	16, 329, 724, 908
ScrFI	CCNGG	4 cut(s)	158, 451, 661, 735
SduI	GDGCHC	2 cut(s)	741, 750
SfaNI	GCATC	3 cut(s)	251, 527, 1137
SfcI	CTRYAG	2 cut(s)	231, 1002
SfoI	GGCGCC	1 cut(s)	448
SinI	GGWCC	1 cut(s)	1157
SmiMI	CAYNNNNRTG	1 cut(s)	602
Sse9I	AATT	5 cut(s)	71, 543, 558, 1074, 1161
SsiI	CCGC	1 cut(s)	299
SspDI	GGCGCC	1 cut(s)	446
SspMI	CTAG	3 cut(s)	102, 131, 1092
StyD4I	CCNGG	4 cut(s)	156, 449, 659, 733
StyI	CCWWGG	2 cut(s)	92, 1059
TaiI	ACGT	2 cut(s)	47, 966
TaqI	TCGA	2 cut(s)	86, 308
TasI	AATT	5 cut(s)	71, 543, 558, 1074, 1161
TatI	WGTACW	3 cut(s)	606, 670, 874
TfiI	GAWTC	4 cut(s)	88, 466, 950, 1107
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	1 cut(s)	798
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	7 cut(s)	203, 234, 370, 481, 536, 628, 643
TspGWI	ACGGA	2 cut(s)	180, 1183
TspRI	CASTG	1 cut(s)	798
VpaK11BI	GGWCC	1 cut(s)	1157
XapI	RAATTY	1 cut(s)	543
XcmI	CCANNNNNNNNNTGG	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	1177
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	3 cut(s)	102, 131, 1092
ZrmI	AGTACT	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.