Rorug02G0010900

Serine incorporator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001865
Physical Location & Seq
Reverse (-)
951250 .. 955826
4577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0010900.1

Sequence Viewer

Length: 1323 bp
ATGTCTTGCAGACTTGCAGATTCTATGTTACTTTCCAAGGGCCCCTATCATAAGCCAATTCGAAGCCAGAGAGTTGGAGCCCATTTTTCTTCAGGAATCTGCTATTTGAAATGGGACAACCATCTCCAAAAGGGTATCAAACATCAACAGTGTTCTCCTAGAAATCGGAGGACCTTTGTACAAGCAATTGCCATTCCAGTTGCACCATCTTCACCAGACAGTGCTGAGTACAGAAAACAATTATCTGAAAGTTATGGTTTCAAACAAATTGGAGAACCACTCCCGGACAATGTTACGCTAAAGGATGTCATTGATTCCCTTCCAAAAAAGGTGTTTGAGATTGATGATTTGAAAGCATGGAAGTCAGTTTTAATATCTGCCACTTCCTATGCAATTGGGCTCTTTTTGATTTCAAAAGCCCCATGGTATCTTCTCCCTGTTGCGTGGGCATGGACAGGGACTGCAGTTACTGGGTTTTTTGTTATAGGCCATGATTGTGCACACAAATCATTCTCAAGAAACAAATTAGTGGAAGACATTGTTGGGACGCTGGCCTTTTTGCCATTGATATATCCATACGAACCATGGAGGTTTAAGCATGATAGGCATCATGCAAAAACGAACATGTTGGTTGAAGATACAGCTTGGCAGCCTATTCCGAAAGAAGAGTTTGATTCATCCCCTTTGTTGCGAAAGGCAATTATTTATGGATATGGCCCATTGCGTCCTTGGATGTCAATAGCTCACTGGTGGCTCGTCCACTTCAATTTGAAGAAGTTCAGAACAAGTGAAGTTAAAAGGGCTGCTATAAGTTTGGCTTGTGTTTTTGCGTTTATGGGGATTGGATGGCCTCTAATTGTGTACAAGACGGGGATCATGGGATGGGTAAAGTTTTGGTTGATGCCATGGTTGGGCTACCACTTTTGGATGAGTACATTCACAATGGTTCATCATACGGCCCCTCATATACCTTTCAAATCTGCGGATGAGTGGAATGCTGCTCAGGCTCAGATTAACGGAACAGTTCATTGTGACTACCCCTCATGGATCGAGATCCTCTGCCATGATATCAATGTCCATATACCCCATCATATATCTCCAAGGATTCCAAGCTATAACTTACGAGCAGCTCATAAGTCTATCCAAGAAAACTGGGGAAAGTATCTGAACGAGGCTACATGGAATTGGCGCTTGATGAAGACGATAATGACAGTGTGCCATGTTTACAACAAGGAGGAGAACTATGTTCCATTTGACGAACTTGCCCCCGAAGACTCTCTTCCGATTGCATTCCTCAAAAAAGTGATGCCTGATTATGCTTGA

Protein Analysis

440

Amino Acids

50.82

Weight (kDa)

9.1

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 141 - 389 9.1e-33 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 983
AclWI GGATC 3 cut(s) 881, 1048, 1055
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 4 cut(s) 180, 230, 863, 934
AfiI CCNNNNNNNGG 1 cut(s) 911
AflIII ACRYGT 1 cut(s) 624
AgsI TTSAA 8 cut(s) 109, 262, 352, 414, 635, 766, 772, 976
AjuI GAANNNNNNNTTGG 2 cut(s) 525, 557
AluBI AGCT 4 cut(s) 644, 743, 1113, 1130
AluI AGCT 4 cut(s) 644, 743, 1113, 1130
Alw21I GWGCWC 1 cut(s) 502
Alw44I GTGCAC 1 cut(s) 498
AlwI GGATC 3 cut(s) 881, 1048, 1055
AlwNI CAGNNNCTG 2 cut(s) 461, 470
AoxI GGCC 6 cut(s) 40, 487, 552, 715, 848, 957
ApaI GGGCCC 1 cut(s) 44
ApaLI GTGCAC 1 cut(s) 498
ApeKI GCWGC 4 cut(s) 649, 803, 998, 1127
Asp700I GAANNNNTTC 1 cut(s) 776
AspLEI GCGC 1 cut(s) 1191
AspS9I GGNCC 5 cut(s) 40, 41, 171, 716, 958
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 204
AsuII TTCGAA 1 cut(s) 61
AvaII GGWCC 1 cut(s) 171
BaeGI GKGCMC 2 cut(s) 44, 502
BanII GRGCYC 3 cut(s) 44, 82, 402
BbsI GAAGAC 3 cut(s) 540, 1205, 1278
Bbv12I GWGCWC 1 cut(s) 502
BbvI GCAGC 4 cut(s) 661, 790, 985, 1139
BccI CCATC 5 cut(s) 129, 214, 840, 876, 1095
BceAI ACGGC 1 cut(s) 972
BcnI CCSGG 1 cut(s) 284
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 462
BfoI RGCGCY 1 cut(s) 1192
BisI GCNGC 4 cut(s) 650, 804, 999, 1128
BlsI GCNGC 4 cut(s) 651, 805, 1000, 1129
Bme1390I CCNGG 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 171
BmgT120I GGNCC 5 cut(s) 40, 41, 171, 716, 958
BmiI GGNNCC 4 cut(s) 42, 43, 79, 960
BmrFI CCNGG 1 cut(s) 284
BmrI ACTGGG 2 cut(s) 480, 1162
BmsI GCATC 3 cut(s) 616, 891, 1296
BmuI ACTGGG 2 cut(s) 480, 1162
BpiI GAAGAC 3 cut(s) 540, 1205, 1278
BplI GAGNNNNNCTC 2 cut(s) 264, 296
Bpu10I CCTNAGC 1 cut(s) 1002
Bpu14I TTCGAA 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 499
BpuMI CCSGG 1 cut(s) 284
BsaBI GATNNNNATC 2 cut(s) 606, 1052
BsaJI CCNNGG 6 cut(s) 36, 422, 584, 728, 905, 1100
Bsc4I CCNNNNNNNGG 1 cut(s) 911
Bse1I ACTGG 4 cut(s) 197, 475, 752, 1157
Bse3DI GCAATG 1 cut(s) 719
Bse8I GATNNNNATC 2 cut(s) 606, 1052
BseDI CCNNGG 6 cut(s) 36, 422, 584, 728, 905, 1100
BseGI GGATG 7 cut(s) 310, 677, 738, 851, 887, 933, 991
BseJI GATNNNNATC 2 cut(s) 606, 1052
BseLI CCNNNNNNNGG 1 cut(s) 911
BseMI GCAATG 1 cut(s) 719
BseMII CTCAG 3 cut(s) 216, 1016, 1022
BseNI ACTGG 4 cut(s) 197, 475, 752, 1157
BseRI GAGGAG 1 cut(s) 1250
BseSI GKGCMC 2 cut(s) 44, 502
BseXI GCAGC 4 cut(s) 661, 790, 985, 1139
BshFI GGCC 6 cut(s) 42, 489, 554, 717, 850, 959
BsiHKAI GWGCWC 1 cut(s) 502
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 3 cut(s) 128, 472, 559
BslI CCNNNNNNNGG 1 cut(s) 911
BsmFI GGGAC 3 cut(s) 128, 472, 559
BsmI GAATGC 2 cut(s) 1000, 1289
BsnI GGCC 6 cut(s) 42, 489, 554, 717, 850, 959
Bsp119I TTCGAA 1 cut(s) 61
Bsp120I GGGCCC 1 cut(s) 40
Bsp1286I GDGCHC 4 cut(s) 44, 82, 402, 502
Bsp1407I TGTACA 2 cut(s) 178, 861
Bsp143I GATC 3 cut(s) 873, 1047, 1053
Bsp19I CCATGG 3 cut(s) 422, 584, 905
BspACI CCGC 1 cut(s) 983
BspANI GGCC 6 cut(s) 42, 489, 554, 717, 850, 959
BspCNI CTCAG 3 cut(s) 217, 1015, 1021
BspLI GGNNCC 4 cut(s) 42, 43, 79, 960
BspMAI CTGCAG 1 cut(s) 466
BspPI GGATC 3 cut(s) 881, 1048, 1055
BspT104I TTCGAA 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 719
BsrGI TGTACA 2 cut(s) 178, 861
BsrI ACTGG 4 cut(s) 197, 475, 752, 1157
BssECI CCNNGG 6 cut(s) 36, 422, 584, 728, 905, 1100
BssMI GATC 3 cut(s) 873, 1047, 1053
BssT1I CCWWGG 6 cut(s) 36, 422, 584, 728, 905, 1100
Bst4CI ACNGT 4 cut(s) 150, 221, 1024, 1213
Bst6I CTCTTC 2 cut(s) 660, 1284
BstAUI TGTACA 2 cut(s) 178, 861
BstBI TTCGAA 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 3 cut(s) 225, 1002, 1008
BstDSI CCRYGG 3 cut(s) 422, 584, 905
BstF5I GGATG 7 cut(s) 310, 677, 738, 851, 887, 933, 991
BstH2I RGCGCY 1 cut(s) 1192
BstHHI GCGC 1 cut(s) 1191
BstKTI GATC 3 cut(s) 876, 1050, 1056
BstMBI GATC 3 cut(s) 873, 1047, 1053
BstMWI GCNNNNNNNGC 2 cut(s) 604, 1004
BstNSI RCATGY 1 cut(s) 628
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 462
BstSLI GKGCMC 2 cut(s) 44, 502
BstV1I GCAGC 4 cut(s) 661, 790, 985, 1139
BstV2I GAAGAC 3 cut(s) 540, 1205, 1278
BstX2I RGATCY 1 cut(s) 1053
BstXI CCANNNNNNTGG 1 cut(s) 74
BstYI RGATCY 1 cut(s) 1053
BsuRI GGCC 6 cut(s) 42, 489, 554, 717, 850, 959
BtgI CCRYGG 3 cut(s) 422, 584, 905
BtsCI GGATG 7 cut(s) 310, 677, 738, 851, 887, 933, 991
BtsIMutI CAGTG 4 cut(s) 155, 226, 745, 1218
Cac8I GCNNGC 1 cut(s) 552
CaiI CAGNNNCTG 2 cut(s) 461, 470
CfoI GCGC 1 cut(s) 1191
Cfr13I GGNCC 5 cut(s) 40, 41, 171, 716, 958
CseI GACGC 2 cut(s) 556, 713
Csp6I GTAC 4 cut(s) 179, 229, 862, 933
CviQI GTAC 4 cut(s) 179, 229, 862, 933
DdeI CTNAG 3 cut(s) 225, 1002, 1008
DpnI GATC 3 cut(s) 875, 1049, 1055
DpnII GATC 3 cut(s) 873, 1047, 1053
Eam1104I CTCTTC 2 cut(s) 660, 1284
EarI CTCTTC 2 cut(s) 660, 1284
Eco130I CCWWGG 6 cut(s) 36, 422, 584, 728, 905, 1100
Eco24I GRGCYC 3 cut(s) 44, 82, 402
Eco32I GATATC 1 cut(s) 1069
Eco47I GGWCC 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 75
EcoO109I RGGNCCY 3 cut(s) 40, 41, 171
EcoRV GATATC 1 cut(s) 1069
EcoT14I CCWWGG 6 cut(s) 36, 422, 584, 728, 905, 1100
EcoT38I GRGCYC 3 cut(s) 44, 82, 402
ErhI CCWWGG 6 cut(s) 36, 422, 584, 728, 905, 1100
FalI AAGNNNNNCTT 4 cut(s) 802, 834, 1263, 1295
FaqI GGGAC 3 cut(s) 128, 472, 559
Fnu4HI GCNGC 4 cut(s) 650, 804, 999, 1128
FokI GGATG 7 cut(s) 317, 664, 745, 858, 894, 940, 998
FriOI GRGCYC 3 cut(s) 44, 82, 402
Fsp4HI GCNGC 4 cut(s) 650, 804, 999, 1128
FspBI CTAG 1 cut(s) 159
GlaI GCGC 1 cut(s) 1190
GluI GCNGC 4 cut(s) 650, 804, 999, 1128
HaeII RGCGCY 1 cut(s) 1192
HaeIII GGCC 6 cut(s) 42, 489, 554, 717, 850, 959
HapII CCGG 1 cut(s) 284
HgaI GACGC 2 cut(s) 556, 713
HhaI GCGC 1 cut(s) 1191
Hin6I GCGC 1 cut(s) 1189
HinP1I GCGC 1 cut(s) 1189
HinfI GANTC 6 cut(s) 20, 96, 314, 674, 1105, 1274
HpaII CCGG 1 cut(s) 284
HphI GGTGA 1 cut(s) 204
Hpy166II GTNNAC 4 cut(s) 500, 760, 862, 1225
Hpy188I TCNGA 7 cut(s) 168, 247, 660, 782, 1011, 1167, 1284
Hpy188III TCNNGA 3 cut(s) 93, 516, 1051
Hpy8I GTNNAC 4 cut(s) 500, 760, 862, 1225
HpyAV CCTTC 1 cut(s) 329
HpyCH4III ACNGT 4 cut(s) 150, 221, 1024, 1213
HpyCH4V TGCA 8 cut(s) 9, 17, 203, 392, 464, 500, 614, 1289
HpyF10VI GCNNNNNNNGC 2 cut(s) 604, 1004
HpyF3I CTNAG 3 cut(s) 225, 1002, 1008
HspAI GCGC 1 cut(s) 1189
Kzo9I GATC 3 cut(s) 873, 1047, 1053
LmnI GCTCC 1 cut(s) 77
Lsp1109I GCAGC 4 cut(s) 661, 790, 985, 1139
LweI GCATC 3 cut(s) 616, 891, 1296
MaeI CTAG 1 cut(s) 159
MaeIII GTNAC 4 cut(s) 27, 292, 466, 1031
MalI GATC 3 cut(s) 875, 1049, 1055
MboI GATC 3 cut(s) 873, 1047, 1053
MfeI CAATTG 2 cut(s) 186, 393
MflI RGATCY 1 cut(s) 1053
MhlI GDGCHC 4 cut(s) 44, 82, 402, 502
MlyI GAGTC 1 cut(s) 1268
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 9 cut(s) 162, 582, 861, 972, 1051, 1067, 1165, 1228, 1304
MroXI GAANNNNTTC 1 cut(s) 776
MseI TTAA 4 cut(s) 371, 594, 795, 1014
MslI CAYNNNNRTG 1 cut(s) 495
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 284
MunI CAATTG 2 cut(s) 186, 393
Mva1269I GAATGC 2 cut(s) 1000, 1289
MwoI GCNNNNNNNGC 2 cut(s) 604, 1004
NciI CCSGG 1 cut(s) 284
NcoI CCATGG 3 cut(s) 422, 584, 905
NdeII GATC 3 cut(s) 873, 1047, 1053
NlaIV GGNNCC 4 cut(s) 42, 43, 79, 960
NmuCI GTSAC 1 cut(s) 1031
NspI RCATGY 1 cut(s) 628
NspV TTCGAA 1 cut(s) 61
PciI ACATGT 1 cut(s) 624
PctI GAATGC 2 cut(s) 1000, 1289
PdmI GAANNNNTTC 1 cut(s) 776
PfeI GAWTC 5 cut(s) 20, 96, 314, 674, 1105
PfoI TCCNGGA 1 cut(s) 282
PkrI GCNGC 4 cut(s) 651, 805, 1000, 1129
PleI GAGTC 1 cut(s) 1268
PpsI GAGTC 1 cut(s) 1268
PpuMI RGGWCCY 1 cut(s) 171
PscI ACATGT 1 cut(s) 624
Psp5II RGGWCCY 1 cut(s) 171
PspN4I GGNNCC 4 cut(s) 42, 43, 79, 960
PspOMI GGGCCC 1 cut(s) 40
PspPI GGNCC 5 cut(s) 40, 41, 171, 716, 958
PspPPI RGGWCCY 1 cut(s) 171
PstI CTGCAG 1 cut(s) 466
PstNI CAGNNNCTG 2 cut(s) 461, 470
PsuI RGATCY 1 cut(s) 1053
RsaI GTAC 4 cut(s) 180, 230, 863, 934
RsaNI GTAC 4 cut(s) 179, 229, 862, 933
RseI CAYNNNNRTG 1 cut(s) 495
SaqAI TTAA 4 cut(s) 371, 594, 795, 1014
SatI GCNGC 4 cut(s) 650, 804, 999, 1128
Sau3AI GATC 3 cut(s) 873, 1047, 1053
Sau96I GGNCC 5 cut(s) 40, 41, 171, 716, 958
SchI GAGTC 1 cut(s) 1268
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 4 cut(s) 44, 82, 402, 502
SetI ASST 8 cut(s) 176, 333, 593, 646, 745, 973, 1115, 1132
SfaNI GCATC 3 cut(s) 616, 891, 1296
SfcI CTRYAG 1 cut(s) 462
SfuI TTCGAA 1 cut(s) 61
SinI GGWCC 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 1 cut(s) 514
SmoI CTYRAG 1 cut(s) 514
SsiI CCGC 1 cut(s) 983
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 6 cut(s) 36, 422, 584, 728, 905, 1100
TaaI ACNGT 4 cut(s) 150, 221, 1024, 1213
TaqI TCGA 2 cut(s) 61, 1050
TatI WGTACW 4 cut(s) 178, 228, 861, 932
TfiI GAWTC 5 cut(s) 20, 96, 314, 674, 1105
Tru1I TTAA 4 cut(s) 371, 594, 795, 1014
Tru9I TTAA 4 cut(s) 371, 594, 795, 1014
TscAI CASTG 4 cut(s) 155, 226, 752, 1218
TseFI GTSAC 1 cut(s) 1031
TseI GCWGC 4 cut(s) 649, 803, 998, 1127
Tsp45I GTSAC 1 cut(s) 1031
TspDTI ATGAA 4 cut(s) 666, 938, 1016, 1211
TspGWI ACGGA 1 cut(s) 1032
TspRI CASTG 4 cut(s) 155, 226, 752, 1218
VneI GTGCAC 1 cut(s) 498
VpaK11BI GGWCC 1 cut(s) 171
XceI RCATGY 1 cut(s) 628
XcmI CCANNNNNNNNNTGG 2 cut(s) 582, 726
XmnI GAANNNNTTC 1 cut(s) 776
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.