Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001865

Physical Location & Seq

Genomic Coordinates Reverse (-)

20128540 .. 20134720

Gene Structure 6181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G228000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGAGAGCGGTTCTGCAAAACTCCAGTTTAAGTCATGGCTCAGCCAATTCCGCAATGGCTCCAATCCTTGGATGGCCAGATACGTCTACGGCTTTATGTTCTTAATAGCAAATCTTCTGGCATGGGCCGTCCGGGATTATGGAGGCAACGTGTTGACGGAGATGGAAAGATTAAAAGGATGCCATGGTGTGAAAGATTGTTTGGGTGCACAAGGGGTTCTGCGTGTCAGCTTGGCATGCTTTATGTTTTATTTCACAATGTTTCTTTCGACGGCTGGTGCATCAAAGTTGAAGGAGCCTAGAGATTCATGGCAATCTGGATGGTGGTCTGCCAAGATTGTCCTCTGGGTTACTTTCATTATTATTCCCTTTTTGCTTCCTGCTGCAATCATTCAGCTCTATGGGGAGATTGCGCATTTTGGTGCCGGGGTATTTCTCCTGATTCAGCTAATAAGCATAATAAGTTTCATTACATGGCTGAACGATTGTTGTCAGTCTTCCAAATCAGAAAGATGCCAAATTCATATCATGCTACTTGCAACTACCGCATATGTTTTATGCTTAACGGGGATCATATTGATGTACATATGGTATGCCCCAGAACCATCTTGCCTCCTCAACATTTTCTTCATTACCTGGACATTAGTACTTCTACAACTCATGACCAGTGTCTCTCTCCACCCGAAAGTGAATGCTGGAATTTTGACTCCAGGGCTCATGGGGCTCTATATAGTATTCATCTGCTGGTTTGCCATTAGAAGTGAGCCATCAGGGGAAAGTTGCAACAAGAAGGCAGAAGCTTCAAACAAAACAGATTGGCTCACCATCATAAGCTTTGTCATTGCCGTACTTGCGATGGTTATTGCAACATTCTCAACGGGCATAGATTCTAAGTGCTTTCAGTTCAGGAAAGACGAGACAGAATCCGAGGATGATGTTCCATATGGTTATGGCTTCTTCCATTTCGTGTTTGCCACAGGAGCAATGTACTTTGCAATGCTGTTGATTGGTTGGAATACTCATCAATCCATGAAAAAATTTACAATTGATGTGGGATGGGCCAGCACATGGGTGAGGATTGTGAACGAGTGGATCGCTGTCTGCGTGTATTGTGAGTATAAGATTCTGCATTTGAGTTTTGGATGTCATGTGGAAATTGTTGTTTCTGAGAGGAAATTTCTGTTTTGCAGTATGGATGCTGGTTGCTCCAATCATATGGAAGAGCAGACAAACGGCGGAATCTGCATAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015194 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015825 GO:0015849 GO:0022857 GO:0022889 GO:0032329 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Serinc

Protein Analysis

418

Amino Acids

47.11

Weight (kDa)

6.74

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24460 AT3G24460 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345
fragaria_vesca	FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181
malus_domestica	MD02G1063500.v1.1 MD02G1063900.v1.1 MD15G1188500.v1.1
prunus_persica	Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1
pyrus_communis	pycom02g04240 pycom02g04260 pycom15g16900
rosa_chinensis	RchiOBHm_Chr2g0090921
rosa_laevigata	RLG00000016155
rosa_roxburghii	Rroxscaffold_2G00150750 Rroxscaffold_6G00414260
rosa_rugosa	Rorug02G0010900 Rorug02G0011000 Rorug02G0011000 Rorug02G0011000 Rorug02G0011100 Rorug02G0011100
rosa_samantha	Rh2AG057200 Rh2BG055700 Rh2CG058000 Rh2DG056600
rosa_wichuraiana	Rw2G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	414
AccB1I	GGYRCC	1 cut(s)	422
AccB7I	CCANNNNNTGG	2 cut(s)	69, 1068
AccBSI	CCGCTC	1 cut(s)	9
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	4 cut(s)	9, 52, 546, 1236
AclWI	GGATC	2 cut(s)	578, 1100
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	4 cut(s)	519, 699, 1037, 1175
AfaI	GTAC	4 cut(s)	584, 648, 849, 989
AfiI	CCNNNNNNNGG	2 cut(s)	69, 1068
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	292, 804
AjnI	CCWGG	2 cut(s)	635, 709
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AleI	CACNNNNGTG	1 cut(s)	1070
AluBI	AGCT	5 cut(s)	231, 397, 448, 800, 834
AluI	AGCT	5 cut(s)	231, 397, 448, 800, 834
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	2 cut(s)	676, 911
Alw44I	GTGCAC	1 cut(s)	207
AlwI	GGATC	2 cut(s)	578, 1100
AoxI	GGCC	3 cut(s)	75, 126, 1059
ApaLI	GTGCAC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	4 cut(s)	519, 699, 1037, 1175
AspLEI	GCGC	1 cut(s)	415
AspS9I	GGNCC	2 cut(s)	126, 1059
AsuC2I	CCSGG	2 cut(s)	134, 427
AsuHPI	GGTGA	2 cut(s)	814, 1084
BaeGI	GKGCMC	1 cut(s)	211
BalI	TGGCCA	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	422
BanII	GRGCYC	2 cut(s)	717, 726
BbsI	GAAGAC	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	8 cut(s)	67, 157, 315, 613, 775, 833, 850, 1050
BceAI	ACGGC	5 cut(s)	106, 113, 288, 830, 1249
BciT130I	CCWGG	2 cut(s)	637, 711
BcnI	CCSGG	2 cut(s)	134, 427
BcoDI	GTCTC	2 cut(s)	676, 911
BfaI	CTAG	1 cut(s)	300
BisI	GCNGC	1 cut(s)	384
BlpI	GCTNAGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	385
BmcAI	AGTACT	1 cut(s)	648
Bme1390I	CCNGG	4 cut(s)	134, 427, 637, 711
BmgT120I	GGNCC	2 cut(s)	126, 1059
BmiI	GGNNCC	3 cut(s)	61, 297, 424
BmrFI	CCNGG	4 cut(s)	134, 427, 637, 711
BmsI	GCATC	4 cut(s)	170, 290, 503, 1186
BoxI	GACNNNNGTC	1 cut(s)	668
BpiI	GAAGAC	1 cut(s)	489
BpmI	CTGGAG	2 cut(s)	8, 693
Bpu1102I	GCTNAGC	1 cut(s)	41
BpuMI	CCSGG	2 cut(s)	134, 427
BsaJI	CCNNGG	5 cut(s)	68, 184, 426, 710, 927
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 1068
Bse1I	ACTGG	2 cut(s)	25, 666
Bse3DI	GCAATG	4 cut(s)	61, 840, 990, 1002
BseBI	CCWGG	2 cut(s)	637, 711
BseDI	CCNNGG	5 cut(s)	68, 184, 426, 710, 927
BseGI	GGATG	7 cut(s)	78, 185, 326, 937, 1061, 1148, 1201
BseLI	CCNNNNNNNGG	2 cut(s)	69, 1068
BseMI	GCAATG	4 cut(s)	61, 840, 990, 1002
BseMII	CTCAG	2 cut(s)	55, 1158
BseNI	ACTGG	2 cut(s)	25, 666
BseRI	GAGGAG	1 cut(s)	605
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	370
BshFI	GGCC	3 cut(s)	77, 128, 1061
BshNI	GGYRCC	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	133, 426
BslI	CCNNNNNNNGG	2 cut(s)	69, 1068
BsmAI	GTCTC	2 cut(s)	676, 911
BsmI	GAATGC	1 cut(s)	697
BsnI	GGCC	3 cut(s)	77, 128, 1061
Bsp1286I	GDGCHC	3 cut(s)	211, 717, 726
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	2 cut(s)	570, 1092
Bsp1720I	GCTNAGC	1 cut(s)	41
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	4 cut(s)	9, 52, 546, 1236
BspANI	GGCC	3 cut(s)	77, 128, 1061
BspCNI	CTCAG	2 cut(s)	54, 1159
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	3 cut(s)	61, 297, 424
BspPI	GGATC	2 cut(s)	578, 1100
BspQI	GCTCTTC	1 cut(s)	1215
BspT107I	GGYRCC	1 cut(s)	422
BsrBI	CCGCTC	1 cut(s)	9
BsrDI	GCAATG	4 cut(s)	61, 840, 990, 1002
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	2 cut(s)	25, 666
BssECI	CCNNGG	5 cut(s)	68, 184, 426, 710, 927
BssMI	GATC	2 cut(s)	570, 1092
BssT1I	CCWWGG	2 cut(s)	68, 184
Bst2UI	CCWGG	2 cut(s)	637, 711
Bst6I	CTCTTC	1 cut(s)	1215
BstAUI	TGTACA	1 cut(s)	582
BstC8I	GCNNGC	2 cut(s)	238, 1063
BstDEI	CTNAG	3 cut(s)	41, 891, 1167
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	7 cut(s)	78, 185, 326, 937, 1061, 1148, 1201
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	2 cut(s)	573, 1095
BstMAI	GTCTC	2 cut(s)	676, 911
BstMBI	GATC	2 cut(s)	570, 1092
BstMWI	GCNNNNNNNGC	7 cut(s)	51, 237, 545, 721, 851, 980, 1242
BstNI	CCWGG	2 cut(s)	637, 711
BstNSI	RCATGY	1 cut(s)	240
BstPAI	GACNNNNGTC	1 cut(s)	668
BstSCI	CCNGG	4 cut(s)	132, 425, 635, 709
BstSLI	GKGCMC	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	370
BstV2I	GAAGAC	1 cut(s)	489
BstXI	CCANNNNNNTGG	1 cut(s)	1216
BsuRI	GGCC	3 cut(s)	77, 128, 1061
BtgI	CCRYGG	1 cut(s)	184
BtgZI	GCGATG	1 cut(s)	869
BtsCI	GGATG	7 cut(s)	78, 185, 326, 937, 1061, 1148, 1201
BtsIMutI	CAGTG	1 cut(s)	673
Cac8I	GCNNGC	2 cut(s)	238, 1063
CciI	TCATGA	1 cut(s)	660
CfoI	GCGC	1 cut(s)	415
Cfr13I	GGNCC	2 cut(s)	126, 1059
Csp6I	GTAC	4 cut(s)	583, 647, 848, 988
CspCI	CAANNNNNGTGG	2 cut(s)	1032, 1067
CviQI	GTAC	4 cut(s)	583, 647, 848, 988
DdeI	CTNAG	3 cut(s)	41, 891, 1167
DpnI	GATC	2 cut(s)	572, 1094
DpnII	GATC	2 cut(s)	570, 1092
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	1215
EarI	CTCTTC	1 cut(s)	1215
EciI	GGCGGA	1 cut(s)	1251
Eco130I	CCWWGG	2 cut(s)	68, 184
Eco24I	GRGCYC	2 cut(s)	717, 726
EcoRII	CCWGG	2 cut(s)	635, 709
EcoT14I	CCWWGG	2 cut(s)	68, 184
EcoT38I	GRGCYC	2 cut(s)	717, 726
ErhI	CCWWGG	2 cut(s)	68, 184
FauNDI	CATATG	4 cut(s)	550, 587, 943, 1215
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	7 cut(s)	85, 192, 333, 944, 1068, 1155, 1208
FriOI	GRGCYC	2 cut(s)	717, 726
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	1 cut(s)	300
FspI	TGCGCA	1 cut(s)	414
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	1 cut(s)	384
GsuI	CTGGAG	2 cut(s)	8, 693
HaeIII	GGCC	3 cut(s)	77, 128, 1061
HapII	CCGG	2 cut(s)	133, 426
HhaI	GCGC	1 cut(s)	415
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HindIII	AAGCTT	2 cut(s)	798, 832
HinfI	GANTC	7 cut(s)	305, 442, 706, 887, 923, 1123, 1239
HpaII	CCGG	2 cut(s)	133, 426
HphI	GGTGA	2 cut(s)	814, 1084
Hpy166II	GTNNAC	4 cut(s)	88, 156, 209, 1084
Hpy188I	TCNGA	3 cut(s)	508, 928, 1168
Hpy188III	TCNNGA	4 cut(s)	318, 439, 661, 907
Hpy8I	GTNNAC	4 cut(s)	88, 156, 209, 1084
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	2 cut(s)	286, 784
HpyCH4IV	ACGT	2 cut(s)	84, 150
HpyF10VI	GCNNNNNNNGC	7 cut(s)	51, 237, 545, 721, 851, 980, 1242
HpyF3I	CTNAG	3 cut(s)	41, 891, 1167
HpySE526I	ACGT	2 cut(s)	84, 150
HspAI	GCGC	1 cut(s)	413
Kzo9I	GATC	2 cut(s)	570, 1092
LguI	GCTCTTC	1 cut(s)	1215
LmnI	GCTCC	4 cut(s)	65, 295, 980, 1211
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	4 cut(s)	170, 290, 503, 1186
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	2 cut(s)	84, 150
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	2 cut(s)	572, 1094
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	2 cut(s)	570, 1092
MboII	GAAGA	5 cut(s)	107, 489, 619, 949, 1232
MfeI	CAATTG	1 cut(s)	1044
MhlI	GDGCHC	3 cut(s)	211, 717, 726
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	7 cut(s)	47, 519, 699, 1037, 1044, 1155, 1175
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	700
MmeI	TCCRAC	1 cut(s)	992
MnlI	CCTC	7 cut(s)	137, 353, 623, 626, 922, 1068, 1164
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	5 cut(s)	30, 104, 173, 563, 1252
MslI	CAYNNNNRTG	3 cut(s)	420, 578, 1070
Msp20I	TGGCCA	1 cut(s)	77
MspI	CCGG	2 cut(s)	133, 426
MspR9I	CCNGG	4 cut(s)	134, 427, 637, 711
MunI	CAATTG	1 cut(s)	1044
Mva1269I	GAATGC	1 cut(s)	697
MvaI	CCWGG	2 cut(s)	637, 711
MwoI	GCNNNNNNNGC	7 cut(s)	51, 237, 545, 721, 851, 980, 1242
NciI	CCSGG	2 cut(s)	134, 427
NcoI	CCATGG	1 cut(s)	184
NdeI	CATATG	4 cut(s)	550, 587, 943, 1215
NdeII	GATC	2 cut(s)	570, 1092
NlaIV	GGNNCC	3 cut(s)	61, 297, 424
NsbI	TGCGCA	1 cut(s)	414
NspI	RCATGY	1 cut(s)	240
OliI	CACNNNNGTG	1 cut(s)	1070
PaeI	GCATGC	1 cut(s)	240
PagI	TCATGA	1 cut(s)	660
PciSI	GCTCTTC	1 cut(s)	1215
PcsI	WCGNNNNNNNCGW	1 cut(s)	1101
PctI	GAATGC	1 cut(s)	697
PfeI	GAWTC	6 cut(s)	305, 442, 887, 923, 1123, 1239
PflMI	CCANNNNNTGG	2 cut(s)	69, 1068
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	385
PleI	GAGTC	1 cut(s)	700
PpsI	GAGTC	1 cut(s)	700
PshAI	GACNNNNGTC	1 cut(s)	668
Psp6I	CCWGG	2 cut(s)	635, 709
PspGI	CCWGG	2 cut(s)	635, 709
PspN4I	GGNNCC	3 cut(s)	61, 297, 424
PspPI	GGNCC	2 cut(s)	126, 1059
RsaI	GTAC	4 cut(s)	584, 648, 849, 989
RsaNI	GTAC	4 cut(s)	583, 647, 848, 988
RseI	CAYNNNNRTG	3 cut(s)	420, 578, 1070
SapI	GCTCTTC	1 cut(s)	1215
SaqAI	TTAA	5 cut(s)	30, 104, 173, 563, 1252
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	2 cut(s)	570, 1092
Sau96I	GGNCC	2 cut(s)	126, 1059
ScaI	AGTACT	1 cut(s)	648
SchI	GAGTC	1 cut(s)	700
ScrFI	CCNGG	4 cut(s)	134, 427, 637, 711
SduI	GDGCHC	3 cut(s)	211, 717, 726
SetI	ASST	8 cut(s)	87, 153, 233, 399, 450, 638, 802, 836
SfaNI	GCATC	4 cut(s)	170, 290, 503, 1186
SmiMI	CAYNNNNRTG	3 cut(s)	420, 578, 1070
SphI	GCATGC	1 cut(s)	240
Sse9I	AATT	7 cut(s)	47, 519, 699, 1037, 1044, 1155, 1175
SsiI	CCGC	4 cut(s)	9, 52, 546, 1236
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	4 cut(s)	132, 425, 635, 709
StyI	CCWWGG	2 cut(s)	68, 184
TaiI	ACGT	2 cut(s)	87, 153
TaqI	TCGA	1 cut(s)	269
TasI	AATT	7 cut(s)	47, 519, 699, 1037, 1044, 1155, 1175
TatI	WGTACW	3 cut(s)	582, 646, 987
TfiI	GAWTC	6 cut(s)	305, 442, 887, 923, 1123, 1239
Tru1I	TTAA	5 cut(s)	30, 104, 173, 563, 1252
Tru9I	TTAA	5 cut(s)	30, 104, 173, 563, 1252
TscAI	CASTG	1 cut(s)	673
TseI	GCWGC	1 cut(s)	383
TspDTI	ATGAA	7 cut(s)	297, 346, 457, 512, 619, 727, 1046
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	673
Van91I	CCANNNNNTGG	2 cut(s)	69, 1068
VneI	GTGCAC	1 cut(s)	207
XapI	RAATTY	4 cut(s)	519, 699, 1037, 1175
XceI	RCATGY	1 cut(s)	240
XcmI	CCANNNNNNNNNTGG	2 cut(s)	53, 70
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	300
ZrmI	AGTACT	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.