Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001865

Physical Location & Seq

Genomic Coordinates Forward (+)

2807995 .. 2808736

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04260.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCTTGCAATGGTTATCGCAACATTCTCAACCGGCATAGATTCCAAATGCTTTCAGTTCAGGAAGGACGAGACTAAATCCAAGGATGATGTGCCATACGTTTATGGATTCTTCCATTTTGTTTTCGCCATGGGAGCAATGTACTTTGCAATGCTGCTGATTGGTTGGAATACTCATCAATCCATGAGAAGGTTTACGATTGATGTGGGATGGGCCAACAGTTGGGTGAGGATTGTGAACGAGTGGATCGCGGTCTGCGTGTATTTTTATGTTTACATCTTGCCACATTCATCCGTTGTACATAGGGAGTGTCCAAGCTTCGCCCTCGAGGATCAAAACTCTTTGCATACTCTGAGAAGAGCCTCCTCATGCCGCCATGGGCAGCAGCGCCACCGGCACTTGACACTGGTGAACTTACTGCAACTTCCAATTCGTAATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015194 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015825 GO:0015849 GO:0022857 GO:0022889 GO:0032329 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Serinc

Protein Analysis

148

Amino Acids

17.24

Weight (kDa)

9.23

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24460 AT3G24460 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345
fragaria_vesca	FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181
malus_domestica	MD02G1063500.v1.1 MD02G1063900.v1.1 MD15G1188500.v1.1
prunus_persica	Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1
pyrus_communis	pycom02g04240 pycom02g04260 pycom15g16900
rosa_chinensis	RchiOBHm_Chr2g0090921
rosa_laevigata	RLG00000016155
rosa_roxburghii	Rroxscaffold_2G00150750 Rroxscaffold_6G00414260
rosa_rugosa	Rorug02G0010900 Rorug02G0011000 Rorug02G0011000 Rorug02G0011000 Rorug02G0011100 Rorug02G0011100
rosa_samantha	Rh2AG057200 Rh2BG055700 Rh2CG058000 Rh2DG056600
rosa_wichuraiana	Rw2G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	326
AccB7I	CCANNNNNTGG	1 cut(s)	222
AccII	CGCG	1 cut(s)	251
AciI	CCGC	2 cut(s)	251, 373
AclWI	GGATC	2 cut(s)	254, 339
AfaI	GTAC	2 cut(s)	143, 300
AfiI	CCNNNNNNNGG	2 cut(s)	189, 222
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	254, 339
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	3 cut(s)	154, 382, 385
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	238, 421
AvaI	CYCGRG	1 cut(s)	326
BbvI	GCAGC	3 cut(s)	141, 394, 397
BccI	CCATC	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	65
BfoI	RGCGCY	1 cut(s)	391
BisI	GCNGC	4 cut(s)	155, 373, 383, 386
BlsI	GCNGC	4 cut(s)	156, 374, 384, 387
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	81, 129, 376
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 222
Bse118I	RCCGGY	2 cut(s)	32, 393
Bse1I	ACTGG	1 cut(s)	411
Bse3DI	GCAATG	3 cut(s)	15, 144, 156
BseDI	CCNNGG	3 cut(s)	81, 129, 376
BseGI	GGATG	3 cut(s)	91, 215, 290
BseLI	CCNNNNNNNGG	2 cut(s)	189, 222
BseMI	GCAATG	3 cut(s)	15, 144, 156
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	355
BseXI	GCAGC	3 cut(s)	141, 394, 397
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	1 cut(s)	215
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	2 cut(s)	33, 394
BslI	CCNNNNNNNGG	2 cut(s)	189, 222
BsmAI	GTCTC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	326
Bsp1407I	TGTACA	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	246, 331
Bsp19I	CCATGG	2 cut(s)	129, 376
BspACI	CCGC	2 cut(s)	251, 373
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	345
BspFNI	CGCG	1 cut(s)	251
BspPI	GGATC	2 cut(s)	254, 339
BspQI	GCTCTTC	1 cut(s)	352
BsrDI	GCAATG	3 cut(s)	15, 144, 156
BsrFI	RCCGGY	2 cut(s)	32, 393
BsrGI	TGTACA	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	411
BssAI	RCCGGY	2 cut(s)	32, 393
BssECI	CCNNGG	3 cut(s)	81, 129, 376
BssMI	GATC	2 cut(s)	246, 331
BssT1I	CCWWGG	3 cut(s)	81, 129, 376
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	352
BstAUI	TGTACA	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	353
BstDSI	CCRYGG	2 cut(s)	129, 376
BstF5I	GGATG	3 cut(s)	91, 215, 290
BstFNI	CGCG	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	2 cut(s)	249, 334
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	2 cut(s)	246, 331
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 394
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	3 cut(s)	141, 394, 397
BsuRI	GGCC	1 cut(s)	215
BtgI	CCRYGG	2 cut(s)	129, 376
BtsCI	GGATG	3 cut(s)	91, 215, 290
BtsIMutI	CAGTG	1 cut(s)	404
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	390
Cfr10I	RCCGGY	2 cut(s)	32, 393
Cfr13I	GGNCC	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	142, 299
CviAII	CATG	4 cut(s)	130, 184, 369, 377
CviJI	RGCY	3 cut(s)	215, 318, 362
CviKI_1	RGCY	3 cut(s)	215, 318, 362
CviQI	GTAC	2 cut(s)	142, 299
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	2 cut(s)	248, 333
DpnII	GATC	2 cut(s)	246, 331
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
Eco130I	CCWWGG	3 cut(s)	81, 129, 376
Eco88I	CYCGRG	1 cut(s)	326
EcoT14I	CCWWGG	3 cut(s)	81, 129, 376
ErhI	CCWWGG	3 cut(s)	81, 129, 376
FaeI	CATG	4 cut(s)	133, 187, 372, 380
FatI	CATG	4 cut(s)	129, 183, 368, 376
Fnu4HI	GCNGC	4 cut(s)	155, 373, 383, 386
FokI	GGATG	3 cut(s)	98, 222, 277
Fsp4HI	GCNGC	4 cut(s)	155, 373, 383, 386
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	4 cut(s)	155, 373, 383, 386
HaeII	RGCGCY	1 cut(s)	391
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	2 cut(s)	33, 394
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	4 cut(s)	133, 187, 372, 380
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	2 cut(s)	41, 108
HpaII	CCGG	2 cut(s)	33, 394
HphI	GGTGA	2 cut(s)	238, 421
Hpy166II	GTNNAC	4 cut(s)	195, 238, 274, 412
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	4 cut(s)	195, 238, 274, 412
HpyAV	CCTTC	2 cut(s)	58, 183
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	4 cut(s)	8, 149, 346, 421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 394
HpyF3I	CTNAG	1 cut(s)	353
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	133, 187, 372, 380
HspAI	GCGC	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	246, 331
LguI	GCTCTTC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	4 cut(s)	46, 46, 392, 407
Lsp1109I	GCAGC	3 cut(s)	141, 394, 397
MaeII	ACGT	1 cut(s)	99
MalI	GATC	2 cut(s)	248, 333
MboI	GATC	2 cut(s)	246, 331
MboII	GAAGA	2 cut(s)	103, 369
MluCI	AATT	1 cut(s)	429
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	5 cut(s)	222, 322, 335, 373, 376
MspI	CCGG	2 cut(s)	33, 394
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	2 cut(s)	134, 394
NcoI	CCATGG	2 cut(s)	129, 376
NdeII	GATC	2 cut(s)	246, 331
NlaIII	CATG	4 cut(s)	133, 187, 372, 380
PaeR7I	CTCGAG	1 cut(s)	326
PciSI	GCTCTTC	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	41, 108
PflMI	CCANNNNNTGG	1 cut(s)	222
PkrI	GCNGC	4 cut(s)	156, 374, 384, 387
PspPI	GGNCC	1 cut(s)	213
PspXI	VCTCGAGB	1 cut(s)	326
RsaI	GTAC	2 cut(s)	143, 300
RsaNI	GTAC	2 cut(s)	142, 299
SapI	GCTCTTC	1 cut(s)	352
SatI	GCNGC	4 cut(s)	155, 373, 383, 386
Sau3AI	GATC	2 cut(s)	246, 331
Sau96I	GGNCC	1 cut(s)	213
SetI	ASST	3 cut(s)	102, 194, 320
Sfr274I	CTCGAG	1 cut(s)	326
SlaI	CTCGAG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	429
SsiI	CCGC	2 cut(s)	251, 373
StyI	CCWWGG	3 cut(s)	81, 129, 376
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	327
TasI	AATT	1 cut(s)	429
TatI	WGTACW	2 cut(s)	141, 298
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	2 cut(s)	41, 108
TscAI	CASTG	1 cut(s)	411
TseI	GCWGC	3 cut(s)	154, 382, 385
TspDTI	ATGAA	1 cut(s)	279
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	1 cut(s)	411
Van91I	CCANNNNNTGG	1 cut(s)	222
XhoI	CTCGAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.