Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001865

Physical Location & Seq

Genomic Coordinates Forward (+)

7765060 .. 7769763

Gene Structure 4704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13345.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGAAACCGGTACAAGCATTGACAACACTGGCTATGAAGGAATCAAGAACGGTTCATGGTTTATCCAGTTCCGTAATGGCTGCAATCCATGGATGGCTAGATATGTGTACGGTCTAATATTCCTCTTGGCAAATCTGCTTGCTTGGGCCTTGCGTGATTATGGCCGAGGCGCCTTGACCGAAATGAGAAAATTCAAGAATTGTAAAGAAGGTGGAGACTGTTTAGGGACGGAAGGAGTTTTACGAGTTAGCTTCGGATGTTTTTTGTTCTATTTCATTATGTTTCTTTCAACCGTTGGGACATCAAAGACGCATTCATCGAGAGATAAATGGCATTCAGGATGGTGGTTTGCTAAGCTTTTCATGTTGCTTGGCTTAACCATCTTCCCCTTTTTGTTGCCTTCTTCCATTATTCAGTTTTACGGGGAGATTGCCCATTTTGGTGCAGGGGTCTTTCTCCTAATTCAGCTGATTAGTATCATTAGTTTCATTACATGGCTCAATGAATGTTTCCAAGCACAAAAAGATGCAGAAAGATGCCATGTCCATGTAATGCTACTAGCGACTACTGCGTACACCGTGTGCATATTAGGGGTTATTTTGATGTACATTTGGTATGTGCCTGAACCATCATGCCTTCTCAACATATTTTTCATCACATGGACTTTGTTCCTCATCCAACTCATGACAAGTATCTCTCTCCACCCCAAAATAAATGCTGGATTCTTGACTCCAGCGCTTATGGGGCTTTACGTTGTGTTTATCTGCTGGTGCGCCATTCGAAGTGAGCCTGTAGGAGAAACTTGCAACAGAAAAGCAGAAGGTTCTAGTAGAACAGACTGGCTTACCATCATAAGCTTTGTTGTTGCACTGCTTGCAATGGTAATAGCGACATTCTCGACGGGAGTAGATTCACAATGTTTTCAGTTTAGAAAAGATGAGAATCATGAGGAAGATGCAATTCCTTACGGATACGGATTCTTTCATTTTGTGTTTGCTACTGGAGCAATGTACTTTGCAATGCTACTTGTTGGTTGGAACATTCACCATTCCATGAAAAAGTGGACGATTGACGTTGGGTGGACAAGTACTTGGGTAAGGATTGTAAACGAATGGCTCGCGGTTGGCGTTTACATTTGGATGTTGGTGGCTCCAATGGTACTGAAAAGTAGACAAACAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015194 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015825 GO:0015849 GO:0022857 GO:0022889 GO:0032329 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Serinc

Protein Analysis

394

Amino Acids

44.98

Weight (kDa)

7.94

Isoelectric Point (pI)

26.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serinc	PF03348	29 - 286	4.3e-54	Serine incorporator (Serinc)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24460 AT3G24460 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345
fragaria_vesca	FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181
malus_domestica	MD02G1063500.v1.1 MD02G1063900.v1.1 MD15G1188500.v1.1
prunus_persica	Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1
pyrus_communis	pycom02g04240 pycom02g04260 pycom15g16900
rosa_chinensis	RchiOBHm_Chr2g0090921
rosa_laevigata	RLG00000016155
rosa_roxburghii	Rroxscaffold_2G00150750 Rroxscaffold_6G00414260
rosa_rugosa	Rorug02G0010900 Rorug02G0011000 Rorug02G0011000 Rorug02G0011000 Rorug02G0011100 Rorug02G0011100
rosa_samantha	Rh2AG057200 Rh2BG055700 Rh2CG058000 Rh2DG056600
rosa_wichuraiana	Rw2G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	1171
AccII	CGCG	1 cut(s)	1121
AciI	CCGC	1 cut(s)	1121
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	171
AdeI	CACNNNGTG	1 cut(s)	582
AfaI	GTAC	7 cut(s)	13, 110, 575, 608, 1013, 1090, 1161
AfeI	AGCGCT	1 cut(s)	738
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	2 cut(s)	196, 291
AluBI	AGCT	4 cut(s)	252, 358, 469, 858
AluI	AGCT	4 cut(s)	252, 358, 469, 858
Alw26I	GTCTC	1 cut(s)	210
Aor51HI	AGCGCT	1 cut(s)	738
AoxI	GGCC	2 cut(s)	147, 163
ApeKI	GCWGC	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	191
AsiGI	ACCGGT	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	173, 739, 776
AspS9I	GGNCC	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	1037
AsuII	TTCGAA	1 cut(s)	781
BanI	GGYRCC	1 cut(s)	170
BarI	GAAGNNNNNNTAC	2 cut(s)	225, 257
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	5 cut(s)	88, 336, 389, 637, 857
BciVI	GTATCC	1 cut(s)	965
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	3 cut(s)	99, 560, 828
BfmI	CTRYAG	1 cut(s)	792
BfoI	RGCGCY	2 cut(s)	174, 740
BfuI	GTATCC	1 cut(s)	965
BisI	GCNGC	1 cut(s)	82
BlpI	GCTNAGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	83
BmcAI	AGTACT	1 cut(s)	1090
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	172, 1152
BmsI	GCATC	3 cut(s)	517, 527, 946
BpmI	CTGGAG	2 cut(s)	717, 1023
Bpu1102I	GCTNAGC	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	781
BsaBI	GATNNNNATC	2 cut(s)	476, 942
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	89, 166
BsaWI	WCCGGW	1 cut(s)	8
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	4 cut(s)	34, 67, 845, 1006
Bse3DI	GCAATG	3 cut(s)	885, 1014, 1026
Bse8I	GATNNNNATC	2 cut(s)	476, 942
BseDI	CCNNGG	2 cut(s)	89, 166
BseGI	GGATG	5 cut(s)	99, 263, 347, 675, 1146
BseJI	GATNNNNATC	2 cut(s)	476, 942
BseMI	GCAATG	3 cut(s)	885, 1014, 1026
BseNI	ACTGG	4 cut(s)	34, 67, 845, 1006
BseXI	GCAGC	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	465
Bsh1236I	CGCG	1 cut(s)	1121
BshFI	GGCC	2 cut(s)	149, 165
BshNI	GGYRCC	1 cut(s)	170
BshTI	ACCGGT	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	2 cut(s)	241, 313
BsmAI	GTCTC	1 cut(s)	210
BsmFI	GGGAC	2 cut(s)	241, 313
BsmI	GAATGC	2 cut(s)	313, 334
BsnI	GGCC	2 cut(s)	149, 165
Bsp119I	TTCGAA	1 cut(s)	781
Bsp1407I	TGTACA	1 cut(s)	606
Bsp1720I	GCTNAGC	1 cut(s)	354
Bsp19I	CCATGG	1 cut(s)	89
BspACI	CCGC	1 cut(s)	1121
BspANI	GGCC	2 cut(s)	149, 165
BspFNI	CGCG	1 cut(s)	1121
BspHI	TCATGA	2 cut(s)	684, 946
BspLI	GGNNCC	2 cut(s)	172, 1152
BspT104I	TTCGAA	1 cut(s)	781
BspT107I	GGYRCC	1 cut(s)	170
BsrDI	GCAATG	3 cut(s)	885, 1014, 1026
BsrFI	RCCGGY	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	606
BsrI	ACTGG	4 cut(s)	34, 67, 845, 1006
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	89, 166
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	89
Bst4CI	ACNGT	5 cut(s)	53, 113, 221, 295, 580
BstACI	GRCGYC	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	875
BstAUI	TGTACA	1 cut(s)	606
BstBI	TTCGAA	1 cut(s)	781
BstC8I	GCNNGC	3 cut(s)	141, 876, 1119
BstDEI	CTNAG	1 cut(s)	354
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	5 cut(s)	99, 263, 347, 675, 1146
BstFNI	CGCG	1 cut(s)	1121
BstH2I	RGCGCY	2 cut(s)	174, 740
BstHHI	GCGC	3 cut(s)	173, 739, 776
BstMAI	GTCTC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	4 cut(s)	569, 745, 875, 1004
BstSFI	CTRYAG	1 cut(s)	792
BstUI	CGCG	1 cut(s)	1121
BstV1I	GCAGC	1 cut(s)	68
BsuI	GTATCC	1 cut(s)	965
BsuRI	GGCC	2 cut(s)	149, 165
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	5 cut(s)	99, 263, 347, 675, 1146
BtsI	GCAGTG	1 cut(s)	869
BtsIMutI	CAGTG	2 cut(s)	27, 869
Cac8I	GCNNGC	3 cut(s)	141, 876, 1119
CciI	TCATGA	2 cut(s)	684, 946
CfoI	GCGC	3 cut(s)	173, 739, 776
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	147
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	7 cut(s)	12, 109, 574, 607, 1012, 1089, 1160
CspAI	ACCGGT	1 cut(s)	8
CviQI	GTAC	7 cut(s)	12, 109, 574, 607, 1012, 1089, 1160
DdeI	CTNAG	1 cut(s)	354
DinI	GGCGCC	1 cut(s)	172
DraIII	CACNNNGTG	1 cut(s)	582
EaeI	YGGCCR	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	89
Eco47III	AGCGCT	1 cut(s)	738
EcoT14I	CCWWGG	1 cut(s)	89
EgeI	GGCGCC	1 cut(s)	172
EheI	GGCGCC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	89
FaqI	GGGAC	2 cut(s)	241, 313
FblI	GTMKAC	1 cut(s)	1171
Fnu4HI	GCNGC	1 cut(s)	82
FokI	GGATG	5 cut(s)	106, 270, 354, 662, 1153
Fsp4HI	GCNGC	1 cut(s)	82
FspBI	CTAG	3 cut(s)	99, 560, 828
GlaI	GCGC	3 cut(s)	172, 738, 775
GluI	GCNGC	1 cut(s)	82
GsuI	CTGGAG	2 cut(s)	717, 1023
HaeII	RGCGCY	2 cut(s)	174, 740
HaeIII	GGCC	2 cut(s)	149, 165
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	3 cut(s)	173, 739, 776
Hin1I	GRCGYC	1 cut(s)	171
Hin6I	GCGC	3 cut(s)	171, 737, 774
HinP1I	GCGC	3 cut(s)	171, 737, 774
HindIII	AAGCTT	2 cut(s)	356, 856
HinfI	GANTC	6 cut(s)	42, 723, 730, 911, 943, 978
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	1037
Hpy166II	GTNNAC	7 cut(s)	109, 576, 1065, 1083, 1108, 1132, 1172
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	8 cut(s)	46, 196, 321, 339, 685, 727, 898, 947
Hpy8I	GTNNAC	7 cut(s)	109, 576, 1065, 1083, 1108, 1132, 1172
Hpy99I	CGWCG	1 cut(s)	904
HpyAV	CCTTC	6 cut(s)	32, 203, 227, 411, 647, 815
HpyCH4III	ACNGT	5 cut(s)	53, 113, 221, 295, 580
HpyCH4IV	ACGT	2 cut(s)	753, 1074
HpyCH4V	TGCA	9 cut(s)	84, 446, 530, 585, 807, 869, 878, 959, 1019
HpyF10VI	GCNNNNNNNGC	4 cut(s)	569, 745, 875, 1004
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	2 cut(s)	753, 1074
Hsp92I	GRCGYC	1 cut(s)	171
HspAI	GCGC	3 cut(s)	171, 737, 774
KasI	GGCGCC	1 cut(s)	170
LmnI	GCTCC	2 cut(s)	1004, 1156
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	3 cut(s)	517, 527, 946
MaeI	CTAG	3 cut(s)	99, 560, 828
MaeII	ACGT	2 cut(s)	753, 1074
MboII	GAAGA	3 cut(s)	376, 396, 965
MluCI	AATT	4 cut(s)	191, 199, 462, 960
Mly113I	GGCGCC	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	724
MmeI	TCCRAC	2 cut(s)	703, 1016
MnlI	CCTC	4 cut(s)	134, 161, 683, 943
MseI	TTAA	1 cut(s)	377
MslI	CAYNNNNRTG	3 cut(s)	441, 546, 1139
MspA1I	CMGCKG	1 cut(s)	469
MspI	CCGG	1 cut(s)	9
Mva1269I	GAATGC	2 cut(s)	313, 334
MvnI	CGCG	1 cut(s)	1121
MwoI	GCNNNNNNNGC	4 cut(s)	569, 745, 875, 1004
NarI	GGCGCC	1 cut(s)	171
NcoI	CCATGG	1 cut(s)	89
NlaIV	GGNNCC	2 cut(s)	172, 1152
NmeAIII	GCCGAG	1 cut(s)	191
NspV	TTCGAA	1 cut(s)	781
PagI	TCATGA	2 cut(s)	684, 946
PcsI	WCGNNNNNNNCGW	2 cut(s)	317, 1125
PctI	GAATGC	2 cut(s)	313, 334
PfeI	GAWTC	5 cut(s)	42, 723, 911, 943, 978
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	83
PleI	GAGTC	1 cut(s)	724
PluTI	GGCGCC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	724
PspN4I	GGNNCC	2 cut(s)	172, 1152
PspPI	GGNCC	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	469
RsaI	GTAC	7 cut(s)	13, 110, 575, 608, 1013, 1090, 1161
RsaNI	GTAC	7 cut(s)	12, 109, 574, 607, 1012, 1089, 1160
RseI	CAYNNNNRTG	3 cut(s)	441, 546, 1139
SaqAI	TTAA	1 cut(s)	377
SatI	GCNGC	1 cut(s)	82
Sau96I	GGNCC	1 cut(s)	147
ScaI	AGTACT	1 cut(s)	1090
SchI	GAGTC	1 cut(s)	724
SetI	ASST	8 cut(s)	214, 254, 360, 471, 756, 826, 860, 1077
SfaNI	GCATC	3 cut(s)	517, 527, 946
SfcI	CTRYAG	1 cut(s)	792
SfoI	GGCGCC	1 cut(s)	172
SfuI	TTCGAA	1 cut(s)	781
SmiMI	CAYNNNNRTG	3 cut(s)	441, 546, 1139
Sse9I	AATT	4 cut(s)	191, 199, 462, 960
SsiI	CCGC	1 cut(s)	1121
SspDI	GGCGCC	1 cut(s)	170
SspI	AATATT	1 cut(s)	120
SspMI	CTAG	3 cut(s)	99, 560, 828
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	5 cut(s)	53, 113, 221, 295, 580
TaiI	ACGT	2 cut(s)	756, 1077
TaqI	TCGA	3 cut(s)	320, 781, 899
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	4 cut(s)	191, 199, 462, 960
TatI	WGTACW	3 cut(s)	606, 1011, 1088
TfiI	GAWTC	5 cut(s)	42, 723, 911, 943, 978
Tru1I	TTAA	1 cut(s)	377
Tru9I	TTAA	1 cut(s)	377
TscAI	CASTG	2 cut(s)	34, 876
TseI	GCWGC	1 cut(s)	81
TspGWI	ACGGA	4 cut(s)	62, 245, 984, 990
TspRI	CASTG	2 cut(s)	34, 876
XapI	RAATTY	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	1171
XspI	CTAG	3 cut(s)	99, 560, 828
ZrmI	AGTACT	1 cut(s)	1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.