Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001865

Physical Location & Seq

Genomic Coordinates Forward (+)

11872509 .. 11874931

Gene Structure 2423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g16900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAGGAGGGTGGATCAGCTGGAAACTATCAGTGGAGTGGACTCAAAGTCAAGGTTGATTCATGGTTCAGCCAATTTCGCAATGGCTCGAATCCATGGATGGCCAGATATGTCTATGGATTCATGTTTTTGATAGCAAATCTTATGGCATGGGCTGTCCGGGATTACGGAAGCAGTGTGTTGACGGAGATGGAGAGATTAAAAGGATGTCATGGTGTGAAGGATTGTTTGGGTGCAGAAGGAGTCCTACGTGTGAGCTTGGGTTGCTTTTTGTTCTATTTCACAATGTTCCTTTCGACTATTGGCACATCGAAGTTGAACGAACCCAGAGATTTGTGGCAATCCGGATGGTGGTCTGCCAAGATTGTCATGTGGGTTTCCTTCATCATCATTCCCTTTGTGCTTCCTGCTAAAATCATTCAGCTATATGGAGAGATTGCTCATTTTGGTGCCGGGGTTTTTCTCTTGATTCAGCTAATAAGCATAATCAGTTTCATTAAGTGGCTGAACGATTGGTGTCAGTCTACCAAATCAGAAAGATGCCGGATTTATGTGACGTTACTTGCAATTACTGCACATGTTGTATGCTTAGTGGGGATCGTATTGATGTACATATGGTATGCACCAGAACCAACTTGCCTCCTCAACATTTTCTTCATTACCTGGACATTAGTACTACTGCAACTCATGACCAGTGTCTCTCTCCACCCGAATGTGAATGCCGGCATCTTGACTCCGGGTCTCATGGGGCTTTATATAGTATTCATCTGCTGGTTTGCTATTAGAAGTGAACCAGCGGGGACAAGTTGCAACAAGAAGGCAGAGGATTCAACCAAAACAGATTGGCTCACCATCATAAGCTTTGTTATAGCCGTGCTTGCAATGGTTATCGCGACATTCTCAACCGGCATAGATTCCAAATGCTTTAAGTTCAGGAACGACGAGACTGAATCTGAGGATGATGTTCCATATGGTTATGGATTCTTCCATTTTGTTTTTGCCACGGGAGCAATGTACTTTGCAATGCTGCTGATTGGTTGGAATACTCATCAGTCCATGAAAAAGTTTACACTTGATGTGGGATGGGCCAGCACTTGGGTGAGGATTGTGAACGAGTGGATCGCCGTCTGCGTGTATTTATGGATGCTGGTGGCTCCAATCATATGGAAGAGCAGACAAACGGCGGAATCCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015194 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015825 GO:0015849 GO:0022857 GO:0022889 GO:0032329 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Serinc

Protein Analysis

399

Amino Acids

45.19

Weight (kDa)

7.5

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serinc	PF03348	24 - 315	2.1e-55	Serine incorporator (Serinc)
Serinc	PF03348	314 - 392	1.7e-20	Serine incorporator (Serinc)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24460 AT3G24460 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345 AT4G13345
fragaria_vesca	FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181 FvH4_1g05181
malus_domestica	MD02G1063500.v1.1 MD02G1063900.v1.1 MD15G1188500.v1.1
prunus_persica	Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1 Prupe.7G228000_v2.0.a1
pyrus_communis	pycom02g04240 pycom02g04260 pycom15g16900
rosa_chinensis	RchiOBHm_Chr2g0090921
rosa_laevigata	RLG00000016155
rosa_roxburghii	Rroxscaffold_2G00150750 Rroxscaffold_6G00414260
rosa_rugosa	Rorug02G0010900 Rorug02G0011000 Rorug02G0011000 Rorug02G0011000 Rorug02G0011100 Rorug02G0011100
rosa_samantha	Rh2AG057200 Rh2BG055700 Rh2CG058000 Rh2DG056600
rosa_wichuraiana	Rw2G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	449
AccB7I	CCANNNNNTGG	1 cut(s)	1095
AccI	GTMKAC	1 cut(s)	524
AccII	CGCG	1 cut(s)	893
AccIII	TCCGGA	1 cut(s)	344
AciI	CCGC	3 cut(s)	797, 1184, 1191
AclWI	GGATC	3 cut(s)	22, 605, 1127
AcoI	YGGCCR	1 cut(s)	102
AfaI	GTAC	3 cut(s)	611, 675, 1016
AfiI	CCNNNNNNNGG	2 cut(s)	351, 1095
AflIII	ACRYGT	2 cut(s)	250, 577
AgsI	TTSAA	2 cut(s)	319, 831
AhdI	GACNNNNNGTC	2 cut(s)	47, 738
AjnI	CCWGG	1 cut(s)	662
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AleI	CACNNNNGTG	1 cut(s)	1097
AluBI	AGCT	5 cut(s)	20, 258, 424, 475, 861
AluI	AGCT	5 cut(s)	20, 258, 424, 475, 861
Alw26I	GTCTC	3 cut(s)	703, 746, 938
AlwI	GGATC	3 cut(s)	22, 605, 1127
Aor13HI	TCCGGA	1 cut(s)	344
AoxI	GGCC	2 cut(s)	102, 1086
ApeKI	GCWGC	1 cut(s)	1027
AspS9I	GGNCC	1 cut(s)	1086
AsuC2I	CCSGG	3 cut(s)	161, 454, 738
AsuHPI	GGTGA	2 cut(s)	841, 1111
BalI	TGGCCA	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	449
BarI	GAAGNNNNNNTAC	2 cut(s)	231, 263
BbvI	GCAGC	1 cut(s)	1014
BccI	CCATC	5 cut(s)	94, 184, 342, 860, 1077
BceAI	ACGGC	2 cut(s)	857, 1109
BciT130I	CCWGG	1 cut(s)	664
BcnI	CCSGG	3 cut(s)	161, 454, 738
BcoDI	GTCTC	3 cut(s)	703, 746, 938
BisI	GCNGC	1 cut(s)	1028
BlsI	GCNGC	1 cut(s)	1029
BmcAI	AGTACT	1 cut(s)	675
Bme1390I	CCNGG	4 cut(s)	161, 454, 664, 738
BmeRI	GACNNNNNGTC	2 cut(s)	47, 738
BmgT120I	GGNCC	1 cut(s)	1086
BmiI	GGNNCC	2 cut(s)	451, 1155
BmrFI	CCNGG	4 cut(s)	161, 454, 664, 738
BmsI	GCATC	3 cut(s)	530, 735, 1134
BoxI	GACNNNNGTC	1 cut(s)	695
BpuMI	CCSGG	3 cut(s)	161, 454, 738
BsaAI	YACGTR	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	746
BsaJI	CCNNGG	3 cut(s)	95, 453, 1002
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	2 cut(s)	351, 1095
Bse118I	RCCGGY	2 cut(s)	722, 905
Bse1I	ACTGG	1 cut(s)	693
Bse3DI	GCAATG	4 cut(s)	88, 888, 1017, 1029
BseAI	TCCGGA	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	664
BseDI	CCNNGG	3 cut(s)	95, 453, 1002
BseGI	GGATG	6 cut(s)	105, 212, 353, 964, 1088, 1149
BseLI	CCNNNNNNNGG	2 cut(s)	351, 1095
BseMI	GCAATG	4 cut(s)	88, 888, 1017, 1029
BseMII	CTCAG	1 cut(s)	945
BseNI	ACTGG	1 cut(s)	693
BseRI	GAGGAG	2 cut(s)	20, 632
BseXI	GCAGC	1 cut(s)	1014
BsgI	GTGCAG	2 cut(s)	255, 558
Bsh1236I	CGCG	1 cut(s)	893
BshFI	GGCC	2 cut(s)	104, 1088
BshNI	GGYRCC	1 cut(s)	449
BsiSI	CCGG	7 cut(s)	160, 345, 453, 544, 723, 737, 906
BslFI	GGGAC	1 cut(s)	814
BslI	CCNNNNNNNGG	2 cut(s)	351, 1095
BsmAI	GTCTC	3 cut(s)	703, 746, 938
BsmFI	GGGAC	1 cut(s)	814
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	2 cut(s)	104, 1088
Bso31I	GGTCTC	1 cut(s)	746
Bsp13I	TCCGGA	1 cut(s)	344
Bsp1407I	TGTACA	1 cut(s)	609
Bsp143I	GATC	3 cut(s)	14, 597, 1119
Bsp19I	CCATGG	1 cut(s)	95
Bsp68I	TCGCGA	1 cut(s)	893
BspACI	CCGC	3 cut(s)	797, 1184, 1191
BspANI	GGCC	2 cut(s)	104, 1088
BspCNI	CTCAG	1 cut(s)	946
BspEI	TCCGGA	1 cut(s)	344
BspFNI	CGCG	1 cut(s)	893
BspHI	TCATGA	1 cut(s)	687
BspLI	GGNNCC	2 cut(s)	451, 1155
BspPI	GGATC	3 cut(s)	22, 605, 1127
BspQI	GCTCTTC	1 cut(s)	1163
BspT107I	GGYRCC	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	746
BsrDI	GCAATG	4 cut(s)	88, 888, 1017, 1029
BsrFI	RCCGGY	2 cut(s)	722, 905
BsrGI	TGTACA	1 cut(s)	609
BsrI	ACTGG	1 cut(s)	693
BssAI	RCCGGY	2 cut(s)	722, 905
BssECI	CCNNGG	3 cut(s)	95, 453, 1002
BssMI	GATC	3 cut(s)	14, 597, 1119
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	664
Bst6I	CTCTTC	1 cut(s)	1163
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstAUI	TGTACA	1 cut(s)	609
BstBAI	YACGTR	1 cut(s)	251
BstC8I	GCNNGC	3 cut(s)	724, 879, 1090
BstDEI	CTNAG	2 cut(s)	589, 954
BstDSI	CCRYGG	2 cut(s)	95, 1002
BstF5I	GGATG	6 cut(s)	105, 212, 353, 964, 1088, 1149
BstFNI	CGCG	1 cut(s)	893
BstKTI	GATC	3 cut(s)	17, 600, 1122
BstMAI	GTCTC	3 cut(s)	703, 746, 938
BstMBI	GATC	3 cut(s)	14, 597, 1119
BstMWI	GCNNNNNNNGC	6 cut(s)	78, 264, 572, 878, 1007, 1190
BstNI	CCWGG	1 cut(s)	664
BstNSI	RCATGY	1 cut(s)	581
BstPAI	GACNNNNGTC	1 cut(s)	695
BstSCI	CCNGG	4 cut(s)	159, 452, 662, 736
BstUI	CGCG	1 cut(s)	893
BstV1I	GCAGC	1 cut(s)	1014
BstXI	CCANNNNNNTGG	1 cut(s)	1164
BsuRI	GGCC	2 cut(s)	104, 1088
BtgI	CCRYGG	2 cut(s)	95, 1002
BtsCI	GGATG	6 cut(s)	105, 212, 353, 964, 1088, 1149
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	3 cut(s)	38, 181, 700
BtuMI	TCGCGA	1 cut(s)	893
Cac8I	GCNNGC	3 cut(s)	724, 879, 1090
CciI	TCATGA	1 cut(s)	687
Cfr10I	RCCGGY	2 cut(s)	722, 905
Cfr13I	GGNCC	1 cut(s)	1086
Csp6I	GTAC	3 cut(s)	610, 674, 1015
CviQI	GTAC	3 cut(s)	610, 674, 1015
DdeI	CTNAG	2 cut(s)	589, 954
DpnI	GATC	3 cut(s)	16, 599, 1121
DpnII	GATC	3 cut(s)	14, 597, 1119
DriI	GACNNNNNGTC	2 cut(s)	47, 738
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	1163
Eam1105I	GACNNNNNGTC	2 cut(s)	47, 738
EarI	CTCTTC	1 cut(s)	1163
Eco130I	CCWWGG	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	746
EcoRII	CCWGG	1 cut(s)	662
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaqI	GGGAC	1 cut(s)	814
FauI	CCCGC	1 cut(s)	790
FauNDI	CATATG	3 cut(s)	614, 970, 1163
FblI	GTMKAC	1 cut(s)	524
Fnu4HI	GCNGC	1 cut(s)	1028
FokI	GGATG	6 cut(s)	112, 219, 360, 971, 1095, 1156
Fsp4HI	GCNGC	1 cut(s)	1028
GluI	GCNGC	1 cut(s)	1028
HaeIII	GGCC	2 cut(s)	104, 1088
HapII	CCGG	7 cut(s)	160, 345, 453, 544, 723, 737, 906
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HindIII	AAGCTT	1 cut(s)	859
HpaII	CCGG	7 cut(s)	160, 345, 453, 544, 723, 737, 906
HphI	GGTGA	2 cut(s)	841, 1111
Hpy166II	GTNNAC	6 cut(s)	41, 183, 525, 791, 1068, 1111
Hpy188I	TCNGA	2 cut(s)	535, 955
Hpy188III	TCNNGA	6 cut(s)	345, 466, 688, 730, 892, 934
Hpy8I	GTNNAC	6 cut(s)	41, 183, 525, 791, 1068, 1111
Hpy99I	CGWCG	1 cut(s)	944
HpyAV	CCTTC	4 cut(s)	214, 233, 391, 811
HpyCH4IV	ACGT	2 cut(s)	250, 557
HpyCH4V	TGCA	8 cut(s)	236, 566, 575, 623, 682, 810, 881, 1022
HpyF10VI	GCNNNNNNNGC	6 cut(s)	78, 264, 572, 878, 1007, 1190
HpyF3I	CTNAG	2 cut(s)	589, 954
HpySE526I	ACGT	2 cut(s)	250, 557
Kpn2I	TCCGGA	1 cut(s)	344
KroI	GCCGGC	1 cut(s)	722
KroNI	GCCGGC	1 cut(s)	724
Kzo9I	GATC	3 cut(s)	14, 597, 1119
LguI	GCTCTTC	1 cut(s)	1163
LmnI	GCTCC	2 cut(s)	1007, 1159
Lsp1109I	GCAGC	1 cut(s)	1014
LweI	GCATC	3 cut(s)	530, 735, 1134
MaeII	ACGT	2 cut(s)	250, 557
MaeIII	GTNAC	2 cut(s)	553, 558
MalI	GATC	3 cut(s)	16, 599, 1121
MboI	GATC	3 cut(s)	14, 597, 1119
MboII	GAAGA	3 cut(s)	646, 976, 1180
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	2 cut(s)	74, 567
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	3 cut(s)	36, 252, 727
MmeI	TCCRAC	1 cut(s)	1019
MnlI	CCTC	5 cut(s)	650, 653, 817, 949, 1095
Mox20I	TGGCCA	1 cut(s)	104
MroI	TCCGGA	1 cut(s)	344
MroNI	GCCGGC	1 cut(s)	722
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	4 cut(s)	200, 498, 927, 1195
MslI	CAYNNNNRTG	3 cut(s)	447, 711, 1097
Msp20I	TGGCCA	1 cut(s)	104
MspA1I	CMGCKG	2 cut(s)	20, 797
MspI	CCGG	7 cut(s)	160, 345, 453, 544, 723, 737, 906
MspR9I	CCNGG	4 cut(s)	161, 454, 664, 738
Mva1269I	GAATGC	1 cut(s)	724
MvaI	CCWGG	1 cut(s)	664
MvnI	CGCG	1 cut(s)	893
MwoI	GCNNNNNNNGC	6 cut(s)	78, 264, 572, 878, 1007, 1190
NaeI	GCCGGC	1 cut(s)	724
NciI	CCSGG	3 cut(s)	161, 454, 738
NcoI	CCATGG	1 cut(s)	95
NdeI	CATATG	3 cut(s)	614, 970, 1163
NdeII	GATC	3 cut(s)	14, 597, 1119
NgoMIV	GCCGGC	1 cut(s)	722
NlaIV	GGNNCC	2 cut(s)	451, 1155
NmuCI	GTSAC	1 cut(s)	553
NruI	TCGCGA	1 cut(s)	893
NspI	RCATGY	1 cut(s)	581
OliI	CACNNNNGTG	1 cut(s)	1097
PagI	TCATGA	1 cut(s)	687
PciI	ACATGT	1 cut(s)	577
PciSI	GCTCTTC	1 cut(s)	1163
PcsI	WCGNNNNNNNCGW	1 cut(s)	1128
PctI	GAATGC	1 cut(s)	724
PdiI	GCCGGC	1 cut(s)	724
PfeI	GAWTC	9 cut(s)	59, 91, 120, 469, 827, 914, 950, 981, 1187
PflMI	CCANNNNNTGG	1 cut(s)	1095
PfoI	TCCNGGA	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	1029
PleI	GAGTC	3 cut(s)	36, 251, 727
PpsI	GAGTC	3 cut(s)	36, 251, 727
Ppu21I	YACGTR	1 cut(s)	251
PscI	ACATGT	1 cut(s)	577
PshAI	GACNNNNGTC	1 cut(s)	695
Psp6I	CCWGG	1 cut(s)	662
PspGI	CCWGG	1 cut(s)	662
PspN4I	GGNNCC	2 cut(s)	451, 1155
PspPI	GGNCC	1 cut(s)	1086
PvuII	CAGCTG	1 cut(s)	20
RruI	TCGCGA	1 cut(s)	893
RsaI	GTAC	3 cut(s)	611, 675, 1016
RsaNI	GTAC	3 cut(s)	610, 674, 1015
RseI	CAYNNNNRTG	3 cut(s)	447, 711, 1097
SapI	GCTCTTC	1 cut(s)	1163
SaqAI	TTAA	4 cut(s)	200, 498, 927, 1195
SatI	GCNGC	1 cut(s)	1028
Sau3AI	GATC	3 cut(s)	14, 597, 1119
Sau96I	GGNCC	1 cut(s)	1086
ScaI	AGTACT	1 cut(s)	675
SchI	GAGTC	3 cut(s)	36, 252, 727
ScrFI	CCNGG	4 cut(s)	161, 454, 664, 738
SetI	ASST	9 cut(s)	22, 57, 253, 260, 426, 477, 560, 665, 863
SfaNI	GCATC	3 cut(s)	530, 735, 1134
SmiMI	CAYNNNNRTG	3 cut(s)	447, 711, 1097
Sse9I	AATT	2 cut(s)	74, 567
SsiI	CCGC	3 cut(s)	797, 1184, 1191
StyD4I	CCNGG	4 cut(s)	159, 452, 662, 736
StyI	CCWWGG	1 cut(s)	95
TaiI	ACGT	2 cut(s)	253, 560
TaqI	TCGA	3 cut(s)	89, 296, 311
TasI	AATT	2 cut(s)	74, 567
TatI	WGTACW	3 cut(s)	609, 673, 1014
TfiI	GAWTC	9 cut(s)	59, 91, 120, 469, 827, 914, 950, 981, 1187
Tru1I	TTAA	4 cut(s)	200, 498, 927, 1195
Tru9I	TTAA	4 cut(s)	200, 498, 927, 1195
TscAI	CASTG	3 cut(s)	38, 181, 700
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	1 cut(s)	1027
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	7 cut(s)	51, 112, 373, 484, 646, 754, 1073
TspGWI	ACGGA	2 cut(s)	183, 200
TspRI	CASTG	3 cut(s)	38, 181, 700
Van91I	CCANNNNNTGG	1 cut(s)	1095
XceI	RCATGY	1 cut(s)	581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	524
ZrmI	AGTACT	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.