Rroxscaffold_2G00150750

Serine incorporator

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
88089879 .. 88093360
3482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150750.1

Sequence Viewer

Length: 1224 bp
ATGGAGAGTCCTGCTCCAACAGGCAACAATGAGAGGAGCAACACGTTCAAAGTTGATACATGGTTTAGCCAATTCCGGAATGGCTCGAATCCATGGATGGCTAGATATGTTTATGGTCTTATGTTTCTGCTAGCAAATCTTCTGGCATGGGCCGTCCGGGATTACGGAAAGAGCTTCTTGATGGAGATGAAAAGGTTAGAAAGATGTGGAGGTCAAAATGAATGTTTGGCTGCAGAAGGTGTTCTTCGTGTGAGCTTGGGATGCTTTTTGTTTTATTTCTCTATGTTTCTTTCAACCGCGGGTGCCTCGAAGTTGAATGAGTCCAGAGATACTTGGCAATCTGGATGGTGGTCTGCTAAGATTGTCCTGTGGATTGCTTTCATTATCATCCCCTTTTTGCTTCCTTCAGCTATTATAAAGATCTATGGTGTGGTTGCACATTTTGGCGCCGGGGTATTTCTTCTGATTCAGCTAATAAGCATAATCAGTTTCATTAGATGGGTGAATGATTGCTGTCAGTCTTCGAAATCAGAACGATGCCAAATTCATTCAATGCTAATTGCAACAACTGCATATGTTGTAAGCTTAGTGGGGATCATACTGATGTACATATGGTATTCACCAGATCCATCTTGCTTCATCAACATTTTCTTCATTACCTGGACATTAGTACTACTTCAACTCATGACGAGCGTCTCTCTCCACCCAAAAGTGAATGCTGGTATCTTGACTCCGGGGCTCATGGGGCTCTATATAGTATTTATCTGCTGGTTTGCCATTAGAAGTGAGCCAGTAGCAGGGAACCTTTGCAACAGGAAGGCAGAAGCTTCACAGCATAGGGATTGGCTCAGCATTATAAGCTTTGTTATTGGTGTACTTGCAATCGTTATTGCAACATTTTCAACAGGCATAGACTCCAAATGCTTTCAGACACTGCAGTTCAAGAAGGACGAGACTGAATCCGAGGATGACGTTCCATATGGCGTTCCATATGGCTATGGCTTCTTCCATTTCGTTTTCGCTACAGGAGCAATGTATTTTGCAATGCTATTGATCAGTTGGAATACTACTAATCACACCATGGAAAAGTGGACAATTGATGTGGGCTGGACTAGCACTTGGGTCAGAATCGTGAACGAGTGGATCGCTGTCTGTGTGTATTTGTGGATGCTGGTTGGTCCAATTATATGGAAGAGTAGACAAACAGCTGAATCCGTCGTATGA

Protein Analysis

407

Amino Acids

46.23

Weight (kDa)

7.96

Isoelectric Point (pI)

28.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 22 - 311 2.6e-52 Serine incorporator (Serinc)
Serinc PF03348 316 - 400 3.6e-20 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 416, 857
AccB1I GGYRCC 2 cut(s) 302, 446
AccI GTMKAC 1 cut(s) 1198
AccII CGCG 1 cut(s) 299
AccIII TCCGGA 1 cut(s) 75
AciI CCGC 2 cut(s) 297, 299
AclWI GGATC 3 cut(s) 602, 620, 1151
AcsI RAATTY 1 cut(s) 543
AcuI CTGAAG 1 cut(s) 390
AcyI GRCGYC 1 cut(s) 447
AfaI GTAC 3 cut(s) 608, 672, 876
AfiI CCNNNNNNNGG 1 cut(s) 797
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 7 cut(s) 49, 294, 316, 552, 680, 903, 943
AjnI CCWGG 1 cut(s) 659
AluBI AGCT 8 cut(s) 174, 255, 410, 472, 585, 827, 861, 1208
AluI AGCT 8 cut(s) 174, 255, 410, 472, 585, 827, 861, 1208
Alw26I GTCTC 2 cut(s) 700, 947
AlwI GGATC 3 cut(s) 602, 620, 1151
AlwNI CAGNNNCTG 1 cut(s) 934
Aor13HI TCCGGA 1 cut(s) 75
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 543
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 1 cut(s) 449
AspS9I GGNCC 2 cut(s) 150, 1178
AsuC2I CCSGG 3 cut(s) 158, 451, 735
AsuHPI GGTGA 2 cut(s) 514, 612
AsuII TTCGAA 1 cut(s) 524
AsuNHI GCTAGC 1 cut(s) 130
AvaII GGWCC 1 cut(s) 1178
BanI GGYRCC 2 cut(s) 302, 446
BanII GRGCYC 2 cut(s) 741, 750
BbsI GAAGAC 1 cut(s) 513
BbvI GCAGC 1 cut(s) 217
BccI CCATC 5 cut(s) 91, 175, 339, 492, 637
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 661
BclI TGATCA 1 cut(s) 1053
BcnI CCSGG 3 cut(s) 158, 451, 735
BcoDI GTCTC 2 cut(s) 700, 947
BfaI CTAG 3 cut(s) 102, 131, 1113
BfmI CTRYAG 3 cut(s) 231, 935, 1023
BfoI RGCGCY 1 cut(s) 450
BglII AGATCT 1 cut(s) 420
BisI GCNGC 1 cut(s) 231
BlpI GCTNAGC 1 cut(s) 848
BlsI GCNGC 1 cut(s) 232
BmcAI AGTACT 1 cut(s) 672
Bme1390I CCNGG 4 cut(s) 158, 451, 661, 735
Bme18I GGWCC 1 cut(s) 1178
BmgT120I GGNCC 2 cut(s) 150, 1178
BmiI GGNNCC 3 cut(s) 304, 448, 803
BmrFI CCNGG 4 cut(s) 158, 451, 661, 735
BmsI GCATC 3 cut(s) 251, 527, 1158
BmtI GCTAGC 1 cut(s) 134
BoxI GACNNNNGTC 1 cut(s) 692
BpiI GAAGAC 1 cut(s) 513
BplI GAGNNNNNCTC 3 cut(s) 30, 682, 714
Bpu1102I GCTNAGC 1 cut(s) 848
Bpu14I TTCGAA 1 cut(s) 524
BpuMI CCSGG 3 cut(s) 158, 451, 735
BsaHI GRCGYC 1 cut(s) 447
BsaJI CCNNGG 6 cut(s) 92, 297, 450, 734, 963, 1080
BsaWI WCCGGW 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 797
Bse1I ACTGG 1 cut(s) 791
Bse3DI GCAATG 2 cut(s) 1038, 1050
BseAI TCCGGA 1 cut(s) 75
BseBI CCWGG 1 cut(s) 661
BseDI CCNNGG 6 cut(s) 92, 297, 450, 734, 963, 1080
BseGI GGATG 6 cut(s) 102, 266, 350, 387, 973, 1173
BseLI CCNNNNNNNGG 1 cut(s) 797
BseMI GCAATG 2 cut(s) 1038, 1050
BseMII CTCAG 1 cut(s) 862
BseNI ACTGG 1 cut(s) 791
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 299
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 2 cut(s) 302, 446
BsiSI CCGG 4 cut(s) 76, 157, 450, 734
BslI CCNNNNNNNGG 1 cut(s) 797
BsmAI GTCTC 2 cut(s) 700, 947
BsmBI CGTCTC 1 cut(s) 700
BsmI GAATGC 1 cut(s) 721
BsnI GGCC 1 cut(s) 152
Bsp119I TTCGAA 1 cut(s) 524
Bsp1286I GDGCHC 2 cut(s) 741, 750
Bsp13I TCCGGA 1 cut(s) 75
Bsp1407I TGTACA 1 cut(s) 606
Bsp143I GATC 5 cut(s) 420, 594, 625, 1053, 1143
Bsp1720I GCTNAGC 1 cut(s) 848
Bsp19I CCATGG 2 cut(s) 92, 1080
BspACI CCGC 2 cut(s) 297, 299
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 861
BspEI TCCGGA 1 cut(s) 75
BspFNI CGCG 1 cut(s) 299
BspHI TCATGA 1 cut(s) 684
BspLI GGNNCC 3 cut(s) 304, 448, 803
BspMAI CTGCAG 2 cut(s) 235, 939
BspOI GCTAGC 1 cut(s) 134
BspPI GGATC 3 cut(s) 602, 620, 1151
BspT104I TTCGAA 1 cut(s) 524
BspT107I GGYRCC 2 cut(s) 302, 446
BsrDI GCAATG 2 cut(s) 1038, 1050
BsrGI TGTACA 1 cut(s) 606
BsrI ACTGG 1 cut(s) 791
BssECI CCNNGG 6 cut(s) 92, 297, 450, 734, 963, 1080
BssMI GATC 5 cut(s) 420, 594, 625, 1053, 1143
BssNI GRCGYC 1 cut(s) 447
BssT1I CCWWGG 2 cut(s) 92, 1080
Bst2UI CCWGG 1 cut(s) 661
Bst6I CTCTTC 1 cut(s) 1187
BstACI GRCGYC 1 cut(s) 447
BstAPI GCANNNNNTGC 1 cut(s) 569
BstAUI TGTACA 1 cut(s) 606
BstBI TTCGAA 1 cut(s) 524
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 3 cut(s) 357, 586, 848
BstDSI CCRYGG 3 cut(s) 92, 297, 1080
BstF5I GGATG 6 cut(s) 102, 266, 350, 387, 973, 1173
BstFNI CGCG 1 cut(s) 299
BstH2I RGCGCY 1 cut(s) 450
BstHHI GCGC 1 cut(s) 449
BstKTI GATC 5 cut(s) 423, 597, 628, 1056, 1146
BstMAI GTCTC 2 cut(s) 700, 947
BstMBI GATC 5 cut(s) 420, 594, 625, 1053, 1143
BstMWI GCNNNNNNNGC 6 cut(s) 261, 569, 745, 858, 1028, 1113
BstNI CCWGG 1 cut(s) 661
BstPAI GACNNNNGTC 1 cut(s) 692
BstSCI CCNGG 4 cut(s) 156, 449, 659, 733
BstSFI CTRYAG 3 cut(s) 231, 935, 1023
BstUI CGCG 1 cut(s) 299
BstV1I GCAGC 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 513
BstX2I RGATCY 2 cut(s) 420, 625
BstXI CCANNNNNNTGG 1 cut(s) 1188
BstYI RGATCY 2 cut(s) 420, 625
BsuRI GGCC 1 cut(s) 152
BtgI CCRYGG 3 cut(s) 92, 297, 1080
BtsCI GGATG 6 cut(s) 102, 266, 350, 387, 973, 1173
BtsI GCAGTG 1 cut(s) 932
BtsIMutI CAGTG 1 cut(s) 932
Cac8I GCNNGC 1 cut(s) 132
CaiI CAGNNNCTG 1 cut(s) 934
CciI TCATGA 1 cut(s) 684
CfoI GCGC 1 cut(s) 449
Cfr13I GGNCC 2 cut(s) 150, 1178
Cfr42I CCGCGG 1 cut(s) 300
CseI GACGC 1 cut(s) 682
Csp6I GTAC 3 cut(s) 607, 671, 875
CspCI CAANNNNNGTGG 2 cut(s) 1083, 1118
CviAII CATG 6 cut(s) 60, 93, 147, 685, 742, 1081
CviQI GTAC 3 cut(s) 607, 671, 875
DdeI CTNAG 3 cut(s) 357, 586, 848
DinI GGCGCC 1 cut(s) 448
DpnI GATC 5 cut(s) 422, 596, 627, 1055, 1145
DpnII GATC 5 cut(s) 420, 594, 625, 1053, 1143
Eam1104I CTCTTC 1 cut(s) 1187
EarI CTCTTC 1 cut(s) 1187
Eco130I CCWWGG 2 cut(s) 92, 1080
Eco24I GRGCYC 2 cut(s) 741, 750
Eco47I GGWCC 1 cut(s) 1178
Eco57I CTGAAG 1 cut(s) 390
EcoRII CCWGG 1 cut(s) 659
EcoT14I CCWWGG 2 cut(s) 92, 1080
EcoT38I GRGCYC 2 cut(s) 741, 750
EgeI GGCGCC 1 cut(s) 448
EheI GGCGCC 1 cut(s) 448
ErhI CCWWGG 2 cut(s) 92, 1080
Esp3I CGTCTC 1 cut(s) 700
FaeI CATG 6 cut(s) 63, 96, 150, 688, 745, 1084
FalI AAGNNNNNCTT 4 cut(s) 161, 193, 228, 260
FatI CATG 6 cut(s) 59, 92, 146, 684, 741, 1080
FauI CCCGC 1 cut(s) 292
FauNDI CATATG 4 cut(s) 574, 611, 979, 991
FbaI TGATCA 1 cut(s) 1053
FblI GTMKAC 1 cut(s) 1198
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 6 cut(s) 109, 273, 357, 374, 980, 1180
FriOI GRGCYC 2 cut(s) 741, 750
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 3 cut(s) 102, 131, 1113
GlaI GCGC 1 cut(s) 448
GluI GCNGC 1 cut(s) 231
HaeII RGCGCY 1 cut(s) 450
HaeIII GGCC 1 cut(s) 152
HapII CCGG 4 cut(s) 76, 157, 450, 734
HgaI GACGC 1 cut(s) 682
HhaI GCGC 1 cut(s) 449
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 6 cut(s) 63, 96, 150, 688, 745, 1084
Hin6I GCGC 1 cut(s) 447
HinP1I GCGC 1 cut(s) 447
HindIII AAGCTT 3 cut(s) 583, 825, 859
HinfI GANTC 9 cut(s) 7, 88, 320, 466, 730, 914, 959, 1128, 1211
HpaII CCGG 4 cut(s) 76, 157, 450, 734
HphI GGTGA 2 cut(s) 514, 612
Hpy166II GTNNAC 4 cut(s) 875, 1092, 1135, 1199
Hpy188I TCNGA 5 cut(s) 465, 532, 930, 964, 1127
Hpy188III TCNNGA 8 cut(s) 76, 178, 324, 342, 685, 727, 943, 1132
Hpy8I GTNNAC 4 cut(s) 875, 1092, 1135, 1199
Hpy99I CGWCG 1 cut(s) 1220
HpyAV CCTTC 4 cut(s) 230, 414, 811, 940
HpyCH4IV ACGT 2 cut(s) 44, 972
HpyCH4V TGCA 9 cut(s) 233, 437, 563, 572, 810, 881, 893, 937, 1043
HpyF10VI GCNNNNNNNGC 6 cut(s) 261, 569, 745, 858, 1028, 1113
HpyF3I CTNAG 3 cut(s) 357, 586, 848
HpySE526I ACGT 2 cut(s) 44, 972
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 6 cut(s) 63, 96, 150, 688, 745, 1084
HspAI GCGC 1 cut(s) 447
KasI GGCGCC 1 cut(s) 446
Kpn2I TCCGGA 1 cut(s) 75
Ksp22I TGATCA 1 cut(s) 1053
KspI CCGCGG 1 cut(s) 300
Kzo9I GATC 5 cut(s) 420, 594, 625, 1053, 1143
LmnI GCTCC 3 cut(s) 19, 36, 1028
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 3 cut(s) 251, 527, 1158
MaeI CTAG 3 cut(s) 102, 131, 1113
MaeII ACGT 2 cut(s) 44, 972
MalI GATC 5 cut(s) 422, 596, 627, 1055, 1145
MboI GATC 5 cut(s) 420, 594, 625, 1053, 1143
MboII GAAGA 7 cut(s) 131, 236, 452, 513, 643, 997, 1204
MfeI CAATTG 1 cut(s) 1095
MflI RGATCY 2 cut(s) 420, 625
MhlI GDGCHC 2 cut(s) 741, 750
MluCI AATT 5 cut(s) 71, 543, 558, 1095, 1182
Mly113I GGCGCC 1 cut(s) 447
MlyI GAGTC 4 cut(s) 16, 329, 724, 908
MmeI TCCRAC 2 cut(s) 41, 1040
MnlI CCTC 4 cut(s) 27, 203, 316, 958
MroI TCCGGA 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 602
MspA1I CMGCKG 2 cut(s) 299, 1208
MspI CCGG 4 cut(s) 76, 157, 450, 734
MspR9I CCNGG 4 cut(s) 158, 451, 661, 735
MunI CAATTG 1 cut(s) 1095
Mva1269I GAATGC 1 cut(s) 721
MvaI CCWGG 1 cut(s) 661
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 6 cut(s) 261, 569, 745, 858, 1028, 1113
NarI GGCGCC 1 cut(s) 447
NciI CCSGG 3 cut(s) 158, 451, 735
NcoI CCATGG 2 cut(s) 92, 1080
NdeI CATATG 4 cut(s) 574, 611, 979, 991
NdeII GATC 5 cut(s) 420, 594, 625, 1053, 1143
NheI GCTAGC 1 cut(s) 130
NlaIII CATG 6 cut(s) 63, 96, 150, 688, 745, 1084
NlaIV GGNNCC 3 cut(s) 304, 448, 803
NspV TTCGAA 1 cut(s) 524
PagI TCATGA 1 cut(s) 684
PctI GAATGC 1 cut(s) 721
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 5 cut(s) 88, 466, 959, 1128, 1211
PfoI TCCNGGA 1 cut(s) 156
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 4 cut(s) 15, 328, 724, 908
PluTI GGCGCC 1 cut(s) 450
PpsI GAGTC 4 cut(s) 15, 328, 724, 908
PshAI GACNNNNGTC 1 cut(s) 692
PsiI TTATAA 2 cut(s) 416, 857
Psp6I CCWGG 1 cut(s) 659
PspGI CCWGG 1 cut(s) 659
PspN4I GGNNCC 3 cut(s) 304, 448, 803
PspPI GGNCC 2 cut(s) 150, 1178
PstI CTGCAG 2 cut(s) 235, 939
PstNI CAGNNNCTG 1 cut(s) 934
PsuI RGATCY 2 cut(s) 420, 625
PvuII CAGCTG 1 cut(s) 1208
RsaI GTAC 3 cut(s) 608, 672, 876
RsaNI GTAC 3 cut(s) 607, 671, 875
RseI CAYNNNNRTG 1 cut(s) 602
SacII CCGCGG 1 cut(s) 300
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 5 cut(s) 420, 594, 625, 1053, 1143
Sau96I GGNCC 2 cut(s) 150, 1178
ScaI AGTACT 1 cut(s) 672
SchI GAGTC 4 cut(s) 16, 329, 724, 908
ScrFI CCNGG 4 cut(s) 158, 451, 661, 735
SduI GDGCHC 2 cut(s) 741, 750
SfaNI GCATC 3 cut(s) 251, 527, 1158
SfcI CTRYAG 3 cut(s) 231, 935, 1023
SfoI GGCGCC 1 cut(s) 448
Sfr303I CCGCGG 1 cut(s) 300
SfuI TTCGAA 1 cut(s) 524
SgrBI CCGCGG 1 cut(s) 300
SinI GGWCC 1 cut(s) 1178
SmiMI CAYNNNNRTG 1 cut(s) 602
Sse9I AATT 5 cut(s) 71, 543, 558, 1095, 1182
SsiI CCGC 2 cut(s) 297, 299
SspDI GGCGCC 1 cut(s) 446
SspMI CTAG 3 cut(s) 102, 131, 1113
StyD4I CCNGG 4 cut(s) 156, 449, 659, 733
StyI CCWWGG 2 cut(s) 92, 1080
TaiI ACGT 2 cut(s) 47, 975
TaqI TCGA 3 cut(s) 86, 308, 524
TasI AATT 5 cut(s) 71, 543, 558, 1095, 1182
TatI WGTACW 3 cut(s) 606, 670, 874
TfiI GAWTC 5 cut(s) 88, 466, 959, 1128, 1211
TscAI CASTG 1 cut(s) 939
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 7 cut(s) 203, 234, 370, 481, 536, 628, 643
TspGWI ACGGA 2 cut(s) 180, 1204
TspRI CASTG 1 cut(s) 939
VpaK11BI GGWCC 1 cut(s) 1178
XapI RAATTY 1 cut(s) 543
XcmI CCANNNNNNNNNTGG 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 1198
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 3 cut(s) 102, 131, 1113
ZrmI AGTACT 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.