AT3G25290

Cytochrome b561 and DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007761
Physical Location & Seq
Forward (+)
9208861 .. 9210653
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G25290.1

Sequence Viewer

Length: 1182 bp
ATGTCTTCTTCTTCTTCCGTAAGAATCTCTCTCTCCTTCATTTTCTTGGCTCTGCTAATCTCACCGGCTGTGTCACAAACATGTAAGTCACAGACTTTTTCCGGCGATAAAACTTACCCTCACTGCCTTGACCTCCCTCAACTCAAAGCCTTCCTTCATTATTCCTATGATGCCTCTAACACAACTCTGGCCGTCGTCTTCTCTGCTCCGCCGGCAAAGCCTGGCGGATGGATCGCGTGGGCGATTAATCCAAAGGCTACCGGTATGGTCGGATCTCAAACCCTTGTCGCTTACAAGGATCCAGGTAATGGTGTTGCCGTGGTGAAGACGCTAAACATTAGCTCCTATAGCTCGCTGATTCCGTCGAAGCTGGCGTTTGATGTTTGGGATATGAAAGCCGAGGAGGCGGCGAGAGATGGAGGAAGTTTGAGAATCTTTGCTAGGGTTAAGGTTCCGGCTGATTTGGTGGCAAAGGGAAAGGTTAATCAGGTTTGGCAAGTTGGTCCTGAATTAGGTCCTGGTGGAATGATTGGGAGGCACGCTTTCGACTCGGCGAATCTCGCTTCTATGAGCTCTCTTGATTTAAAAGGTGACAACAGCGGTGGCACAATCTCTGGAGGCGACGAGGTAAATGCCAAGATCAAGAACAGAAATATTCATGGGATATTAAACGCAGTGAGTTGGGGAATTTTGTTTCCGATAGGAGCAATAATAGCCAGGTACATGAGAGTATTTGACTCGGCCGATCCGGCCTGGTTTTACCTCCACGTTTCTTGTCAATTCTCTGCTTATGTCATCGGTGTTGCCGGTTGGGCTACCGGACTTAAGCTCGGTAACGAGTCCGAGGGTATTCGCTTCTCCGCCCACCGTAACATCGGCATTGCCCTCTTCACCCTTGCCACCATTCAGATGTTTGCGATGTTGTTGCGGCCTAAGAAAGATCACAAGTACAGATTCTATTGGAATATCTACCACCATGGAGTCGGTTATGCGATCCTCACCCTTGGGATCATTAATGTCTTCAAAGGTCTCAACATCTTGAAACCACAAGACACGTACAAGACGGCTTACATTGCAGTGATTGCCGTTCTTGGAGGCATTGCTTTGCTCTTAGAAGCCATCACTTGGGTCGTTGTACTCAAGAGAAAATCAAACAACTCAATGAAGCCTCTTAGGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

393

Amino Acids

42.56

Weight (kDa)

9.67

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 89 - 195 2.7e-25 Protein of unknown function (DUF568)
Cytochrom_B561 PF03188 227 - 344 1.5e-06 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 308, 1125
AccII CGCG 1 cut(s) 236
AciI CCGC 6 cut(s) 209, 225, 407, 600, 861, 928
AclWI GGATC 7 cut(s) 239, 280, 293, 306, 740, 988, 1016
AcoI YGGCCR 2 cut(s) 189, 741
AcsI RAATTY 1 cut(s) 687
AfaI GTAC 4 cut(s) 722, 950, 1058, 1137
AfiI CCNNNNNNNGG 3 cut(s) 308, 512, 1125
AflII CTTAAG 1 cut(s) 824
AflIII ACRYGT 2 cut(s) 80, 1053
AgeI ACCGGT 1 cut(s) 260
AgsI TTSAA 2 cut(s) 1024, 1042
AjnI CCWGG 5 cut(s) 220, 301, 517, 716, 752
AluBI AGCT 5 cut(s) 342, 351, 370, 573, 829
AluI AGCT 5 cut(s) 342, 351, 370, 573, 829
Alw21I GWGCWC 1 cut(s) 575
Alw26I GTCTC 1 cut(s) 1034
AlwI GGATC 7 cut(s) 239, 280, 293, 306, 740, 988, 1016
AoxI GGCC 4 cut(s) 189, 741, 750, 929
ApoI RAATTY 1 cut(s) 687
AseI ATTAAT 2 cut(s) 246, 1014
AsiGI ACCGGT 1 cut(s) 260
AspS9I GGNCC 3 cut(s) 503, 515, 1176
AsuHPI GGTGA 5 cut(s) 54, 334, 602, 883, 991
AvaII GGWCC 3 cut(s) 503, 515, 1176
BamHI GGATCC 1 cut(s) 298
BanII GRGCYC 1 cut(s) 575
BbsI GAAGAC 3 cut(s) 190, 332, 1012
Bbv12I GWGCWC 1 cut(s) 575
BccI CCATC 3 cut(s) 222, 410, 1127
BceAI ACGGC 4 cut(s) 176, 302, 1070, 1080
BcgI CGANNNNNNTGC 4 cut(s) 614, 648, 907, 941
BciT130I CCWGG 5 cut(s) 222, 303, 519, 718, 754
BcoDI GTCTC 1 cut(s) 1034
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 346
BfrI CTTAAG 1 cut(s) 824
BglI GCCNNNNNGGC 3 cut(s) 404, 749, 812
BisI GCNGC 2 cut(s) 408, 929
BlsI GCNGC 2 cut(s) 409, 930
Bme1390I CCNGG 5 cut(s) 222, 303, 519, 718, 754
Bme18I GGWCC 3 cut(s) 503, 515, 1176
BmgT120I GGNCC 3 cut(s) 503, 515, 1176
BmiI GGNNCC 2 cut(s) 300, 453
BmrFI CCNGG 5 cut(s) 222, 303, 519, 718, 754
BmsI GCATC 1 cut(s) 160
BpiI GAAGAC 3 cut(s) 190, 332, 1012
BpmI CTGGAG 1 cut(s) 636
BpuEI CTTGAG 1 cut(s) 1124
BsaAI YACGTR 1 cut(s) 1056
BsaI GGTCTC 1 cut(s) 1034
BsaJI CCNNGG 5 cut(s) 318, 399, 843, 976, 1003
BsaWI WCCGGW 2 cut(s) 260, 818
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 3 cut(s) 308, 512, 1125
Bse118I RCCGGY 4 cut(s) 64, 211, 260, 806
Bse3DI GCAATG 3 cut(s) 879, 1071, 1098
BseBI CCWGG 5 cut(s) 222, 303, 519, 718, 754
BseDI CCNNGG 5 cut(s) 318, 399, 843, 976, 1003
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 3 cut(s) 308, 512, 1125
BseMI GCAATG 3 cut(s) 879, 1071, 1098
BseRI GAGGAG 1 cut(s) 416
BseX3I CGGCCG 1 cut(s) 741
Bsh1236I CGCG 1 cut(s) 236
Bsh1285I CGRYCG 1 cut(s) 744
BshFI GGCC 4 cut(s) 191, 743, 752, 931
BshTI ACCGGT 1 cut(s) 260
BsiEI CGRYCG 1 cut(s) 744
BsiHKAI GWGCWC 1 cut(s) 575
BsiSI CCGG 8 cut(s) 65, 102, 212, 261, 455, 749, 807, 819
BslI CCNNNNNNNGG 3 cut(s) 308, 512, 1125
BsmAI GTCTC 1 cut(s) 1034
BsnI GGCC 4 cut(s) 191, 743, 752, 931
Bso31I GGTCTC 1 cut(s) 1034
Bsp1286I GDGCHC 1 cut(s) 575
Bsp143I GATC 8 cut(s) 231, 272, 298, 639, 745, 940, 993, 1008
Bsp19I CCATGG 1 cut(s) 976
BspACI CCGC 6 cut(s) 209, 225, 407, 600, 861, 928
BspANI GGCC 4 cut(s) 191, 743, 752, 931
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 2 cut(s) 300, 453
BspPI GGATC 7 cut(s) 239, 280, 293, 306, 740, 988, 1016
BspTI CTTAAG 1 cut(s) 824
BspTNI GGTCTC 1 cut(s) 1034
BsrDI GCAATG 3 cut(s) 879, 1071, 1098
BsrFI RCCGGY 4 cut(s) 64, 211, 260, 806
BssAI RCCGGY 4 cut(s) 64, 211, 260, 806
BssECI CCNNGG 5 cut(s) 318, 399, 843, 976, 1003
BssMI GATC 8 cut(s) 231, 272, 298, 639, 745, 940, 993, 1008
BssT1I CCWWGG 2 cut(s) 976, 1003
Bst2UI CCWGG 5 cut(s) 222, 303, 519, 718, 754
Bst4CI ACNGT 1 cut(s) 869
Bst6I CTCTTC 1 cut(s) 893
BstAFI CTTAAG 1 cut(s) 824
BstAPI GCANNNNNTGC 1 cut(s) 1082
BstBAI YACGTR 1 cut(s) 1056
BstC8I GCNNGC 4 cut(s) 213, 353, 372, 540
BstDEI CTNAG 3 cut(s) 933, 1111, 1172
BstDSI CCRYGG 2 cut(s) 318, 976
BstENI CCTNNNNNAGG 1 cut(s) 510
BstF5I GGATG 1 cut(s) 233
BstFNI CGCG 1 cut(s) 236
BstKTI GATC 8 cut(s) 234, 275, 301, 642, 748, 943, 996, 1011
BstMAI GTCTC 1 cut(s) 1034
BstMBI GATC 8 cut(s) 231, 272, 298, 639, 745, 940, 993, 1008
BstMCI CGRYCG 1 cut(s) 744
BstNI CCWGG 5 cut(s) 222, 303, 519, 718, 754
BstNSI RCATGY 1 cut(s) 84
BstSCI CCNGG 5 cut(s) 220, 301, 517, 716, 752
BstSFI CTRYAG 1 cut(s) 346
BstUI CGCG 1 cut(s) 236
BstV2I GAAGAC 3 cut(s) 190, 332, 1012
BstX2I RGATCY 2 cut(s) 272, 298
BstYI RGATCY 2 cut(s) 272, 298
BstZI CGGCCG 1 cut(s) 741
BsuRI GGCC 4 cut(s) 191, 743, 752, 931
BtgI CCRYGG 2 cut(s) 318, 976
BtgZI GCGATG 1 cut(s) 932
BtsCI GGATG 1 cut(s) 233
BtsI GCAGTG 3 cut(s) 121, 681, 1083
BtsIMutI CAGTG 3 cut(s) 121, 681, 1083
Cac8I GCNNGC 4 cut(s) 213, 353, 372, 540
Cfr10I RCCGGY 4 cut(s) 64, 211, 260, 806
Cfr13I GGNCC 3 cut(s) 503, 515, 1176
CseI GACGC 1 cut(s) 337
Csp6I GTAC 4 cut(s) 721, 949, 1057, 1136
CspAI ACCGGT 1 cut(s) 260
CspCI CAANNNNNGTGG 4 cut(s) 583, 618, 755, 790
CviAII CATG 4 cut(s) 81, 659, 724, 977
CviQI GTAC 4 cut(s) 721, 949, 1057, 1136
DdeI CTNAG 3 cut(s) 933, 1111, 1172
DpnI GATC 8 cut(s) 233, 274, 300, 641, 747, 942, 995, 1010
DpnII GATC 8 cut(s) 231, 272, 298, 639, 745, 940, 993, 1008
DraI TTTAAA 1 cut(s) 585
EaeI YGGCCR 2 cut(s) 189, 741
EagI CGGCCG 1 cut(s) 741
Eam1104I CTCTTC 1 cut(s) 893
EarI CTCTTC 1 cut(s) 893
EciI GGCGGA 3 cut(s) 198, 240, 850
Ecl136II GAGCTC 1 cut(s) 573
EclXI CGGCCG 1 cut(s) 741
Eco130I CCWWGG 2 cut(s) 976, 1003
Eco24I GRGCYC 1 cut(s) 575
Eco31I GGTCTC 1 cut(s) 1034
Eco47I GGWCC 3 cut(s) 503, 515, 1176
Eco52I CGGCCG 1 cut(s) 741
Eco53kI GAGCTC 1 cut(s) 573
EcoICRI GAGCTC 1 cut(s) 573
EcoNI CCTNNNNNAGG 1 cut(s) 510
EcoO109I RGGNCCY 2 cut(s) 515, 1176
EcoRII CCWGG 5 cut(s) 220, 301, 517, 716, 752
EcoT14I CCWWGG 2 cut(s) 976, 1003
EcoT38I GRGCYC 1 cut(s) 575
ErhI CCWWGG 2 cut(s) 976, 1003
FaeI CATG 4 cut(s) 84, 662, 727, 980
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 4 cut(s) 80, 658, 723, 976
Fnu4HI GCNGC 2 cut(s) 408, 929
FokI GGATG 1 cut(s) 240
FriOI GRGCYC 1 cut(s) 575
Fsp4HI GCNGC 2 cut(s) 408, 929
FspBI CTAG 1 cut(s) 441
GluI GCNGC 2 cut(s) 408, 929
GsuI CTGGAG 1 cut(s) 636
HaeIII GGCC 4 cut(s) 191, 743, 752, 931
HapII CCGG 8 cut(s) 65, 102, 212, 261, 455, 749, 807, 819
HgaI GACGC 1 cut(s) 337
Hin1II CATG 4 cut(s) 84, 662, 727, 980
HinfI GANTC 9 cut(s) 24, 358, 432, 548, 556, 737, 839, 954, 981
HpaII CCGG 8 cut(s) 65, 102, 212, 261, 455, 749, 807, 819
HphI GGTGA 5 cut(s) 54, 334, 602, 883, 991
Hpy188I TCNGA 4 cut(s) 272, 699, 844, 909
Hpy188III TCNNGA 6 cut(s) 506, 578, 615, 643, 1039, 1141
Hpy99I CGWCG 3 cut(s) 197, 367, 626
HpyAV CCTTC 3 cut(s) 46, 160, 164
HpyCH4III ACNGT 1 cut(s) 869
HpyCH4IV ACGT 2 cut(s) 768, 1055
HpyCH4V TGCA 1 cut(s) 1076
HpyF3I CTNAG 3 cut(s) 933, 1111, 1172
HpySE526I ACGT 2 cut(s) 768, 1055
Hsp92II CATG 4 cut(s) 84, 662, 727, 980
KroI GCCGGC 1 cut(s) 211
KroNI GCCGGC 1 cut(s) 213
Kzo9I GATC 8 cut(s) 231, 272, 298, 639, 745, 940, 993, 1008
LmnI GCTCC 3 cut(s) 211, 347, 704
LweI GCATC 1 cut(s) 160
MaeI CTAG 1 cut(s) 441
MaeII ACGT 2 cut(s) 768, 1055
MaeIII GTNAC 5 cut(s) 72, 87, 590, 833, 869
MalI GATC 8 cut(s) 233, 274, 300, 641, 747, 942, 995, 1010
MboI GATC 8 cut(s) 231, 272, 298, 639, 745, 940, 993, 1008
MboII GAAGA 6 cut(s) 3, 6, 190, 337, 880, 1012
MflI RGATCY 2 cut(s) 272, 298
MhlI GDGCHC 1 cut(s) 575
MluCI AATT 3 cut(s) 509, 687, 779
MlyI GAGTC 4 cut(s) 542, 731, 848, 990
MmeI TCCRAC 1 cut(s) 250
MroNI GCCGGC 1 cut(s) 211
MseI TTAA 7 cut(s) 246, 447, 483, 584, 668, 825, 1014
MslI CAYNNNNRTG 3 cut(s) 79, 908, 1076
MspA1I CMGCKG 1 cut(s) 600
MspCI CTTAAG 1 cut(s) 824
MspI CCGG 8 cut(s) 65, 102, 212, 261, 455, 749, 807, 819
MspR9I CCNGG 5 cut(s) 222, 303, 519, 718, 754
MvaI CCWGG 5 cut(s) 222, 303, 519, 718, 754
MvnI CGCG 1 cut(s) 236
NaeI GCCGGC 1 cut(s) 213
NcoI CCATGG 1 cut(s) 976
NdeII GATC 8 cut(s) 231, 272, 298, 639, 745, 940, 993, 1008
NgoMIV GCCGGC 1 cut(s) 211
NlaIII CATG 4 cut(s) 84, 662, 727, 980
NlaIV GGNNCC 2 cut(s) 300, 453
NmeAIII GCCGAG 3 cut(s) 424, 530, 719
NmuCI GTSAC 3 cut(s) 72, 87, 590
NspI RCATGY 1 cut(s) 84
PciI ACATGT 1 cut(s) 80
PcsI WCGNNNNNNNCGW 2 cut(s) 359, 371
PdiI GCCGGC 1 cut(s) 213
PfeI GAWTC 5 cut(s) 24, 358, 432, 556, 954
PflMI CCANNNNNTGG 2 cut(s) 308, 1125
PinAI ACCGGT 1 cut(s) 260
PkrI GCNGC 2 cut(s) 409, 930
PleI GAGTC 4 cut(s) 542, 731, 847, 989
PpsI GAGTC 4 cut(s) 542, 731, 847, 989
Ppu21I YACGTR 1 cut(s) 1056
PpuMI RGGWCCY 2 cut(s) 515, 1176
PscI ACATGT 1 cut(s) 80
PshBI ATTAAT 2 cut(s) 246, 1014
Psp124BI GAGCTC 1 cut(s) 575
Psp5II RGGWCCY 2 cut(s) 515, 1176
Psp6I CCWGG 5 cut(s) 220, 301, 517, 716, 752
PspGI CCWGG 5 cut(s) 220, 301, 517, 716, 752
PspN4I GGNNCC 2 cut(s) 300, 453
PspPI GGNCC 3 cut(s) 503, 515, 1176
PspPPI RGGWCCY 2 cut(s) 515, 1176
PsuI RGATCY 2 cut(s) 272, 298
RsaI GTAC 4 cut(s) 722, 950, 1058, 1137
RsaNI GTAC 4 cut(s) 721, 949, 1057, 1136
RseI CAYNNNNRTG 3 cut(s) 79, 908, 1076
SacI GAGCTC 1 cut(s) 575
SaqAI TTAA 7 cut(s) 246, 447, 483, 584, 668, 825, 1014
SatI GCNGC 2 cut(s) 408, 929
Sau3AI GATC 8 cut(s) 231, 272, 298, 639, 745, 940, 993, 1008
Sau96I GGNCC 3 cut(s) 503, 515, 1176
SchI GAGTC 4 cut(s) 542, 731, 848, 990
ScrFI CCNGG 5 cut(s) 222, 303, 519, 718, 754
SduI GDGCHC 1 cut(s) 575
SfaNI GCATC 1 cut(s) 160
SfcI CTRYAG 1 cut(s) 346
SfiI GGCCNNNNNGGCC 1 cut(s) 749
SinI GGWCC 3 cut(s) 503, 515, 1176
SmiMI CAYNNNNRTG 3 cut(s) 79, 908, 1076
SmlI CTYRAG 2 cut(s) 824, 1139
SmoI CTYRAG 2 cut(s) 824, 1139
Sse9I AATT 3 cut(s) 509, 687, 779
SsiI CCGC 6 cut(s) 209, 225, 407, 600, 861, 928
SspI AATATT 1 cut(s) 655
SspMI CTAG 1 cut(s) 441
SstI GAGCTC 1 cut(s) 575
StyD4I CCNGG 5 cut(s) 220, 301, 517, 716, 752
StyI CCWWGG 2 cut(s) 976, 1003
TaaI ACNGT 1 cut(s) 869
TaiI ACGT 2 cut(s) 771, 1058
TaqI TCGA 2 cut(s) 365, 546
TasI AATT 3 cut(s) 509, 687, 779
TatI WGTACW 2 cut(s) 948, 1135
TauI GCSGC 2 cut(s) 410, 931
TfiI GAWTC 5 cut(s) 24, 358, 432, 556, 954
Tru1I TTAA 7 cut(s) 246, 447, 483, 584, 668, 825, 1014
Tru9I TTAA 7 cut(s) 246, 447, 483, 584, 668, 825, 1014
TscAI CASTG 3 cut(s) 128, 681, 1083
TseFI GTSAC 3 cut(s) 72, 87, 590
Tsp45I GTSAC 3 cut(s) 72, 87, 590
TspDTI ATGAA 5 cut(s) 28, 146, 407, 647, 1178
TspGWI ACGGA 2 cut(s) 7, 351
TspRI CASTG 3 cut(s) 128, 681, 1083
Van91I CCANNNNNTGG 2 cut(s) 308, 1125
Vha464I CTTAAG 1 cut(s) 824
VpaK11BI GGWCC 3 cut(s) 503, 515, 1176
VspI ATTAAT 2 cut(s) 246, 1014
XagI CCTNNNNNAGG 1 cut(s) 510
XapI RAATTY 1 cut(s) 687
XceI RCATGY 1 cut(s) 84
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.