Rorug06G0153100

Auxin-induced in root cultures protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007761
Physical Location & Seq
Reverse (-)
21987984 .. 21992067
4084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0153100.1

Sequence Viewer

Length: 4038 bp
ATGCAACAATTCAAGAGCCTCGCCTGGAACTGCAGAGGGCTTAACAATACAGAAACGCAGGATGCTCTCGTCGATATTGTTCGACGTCAAAACCCTAGCCTGTGCGTCGTGTGCGCTCCTAAAGATGATGATTGCCGTGGCCTGGCACTGTTCTGGCGGAATGATACCCCTGTTAGGCTCAGGAACTACTCTGCGAATCATATTGATGTTGAGGTTGGGGCTATAGGATCTGAAGGTGTTTTTCGATTTACAGGAATCTATGGAGTTGCTACAACAGCAAATCGTACCATCACTTGGGAGCTCCTCAGATTGTTAGCTTCTCAGGTTCGCATTCCTTGGTTGGTAGCTGGAGATTTCAATGAAATTCTTTGCCATGCTGACAAGTCAGGCGGTCCACCCCGTAGCCTCGCCCAAATGAACAGCTTCAGACAAGCTCTTGTCGACTGCGATCTCATGGACATAGGGTTTGTGGGAGCGCGTTTTACATGGTCTAATCGCTTCACCAAAGAGCGGCTGGATCGGGCATGCCAAACAGTCCAGTGGAGACACATGGATCCATTCTCCAGGGTTATCACTCTCCCTCTTAGCAAATCTGACCACTGTCCCATTTTAATCGAGATCAACCCGGAACCAACTCCAATGTATCGCAGACCTCGGTCTTTTAAATTTGAGGAGATGTGGTTGCCACACCCAGACTGTGCTAAGGTAGTGGAACGAGGGTGGATGCTTCCAACTTCTGGTGATTCCATGCAGCAAGTTGGTAGAAAGATTAAGCATATCGGCCAACTTTTTATGAGTTGGAACTCCGGTGTTTTTCAACAAAGGCAGACGGAGATGAAGTTGATTCAATGTAAGTTGGATGAGCTGATGAAGCAATCGTTTGATGTTGAGCATTTCGATGAACAGAGGAGTTTACAATTCCGATTGAATGAGTTACTTACTGCCAACGAGACTTATTGGCGACAACGATCACGACTCCAATGGTTGAGAGAAGGTGATCGTAACACAGCTTTTTTCCATAGAAGTGCTTCGAATCGTCGATGTCGGAATCGAATTAAAGGGCTTCGCACTGAGACTGGACAATGGACCTCTAATCCGGGGGAAATCTCTGAGCTTTTGATCCACTATTACGAGTCGATTTTCCGAGCTAGTAGACCGGACCCTGTGGCCCTTAACACGGTTTTGGATTGTCTGCAACCTAGGGTTTCTGCTGAAATGAACTTGAACCTTACTGCTCCATATTCTGATGCTGAAATAAAGCAGGCCTTATTCCAGATGCAACCATCAAAAGCGCCGGGCCCGGATGGTATGTCTCCATGCTTCTTCCAAAAATTTTGGAATGTGGTTGAAAGGGATGTGTGTCTTGCCGTCCGTGAGATATTGAGTATTGGTAGCATCTCACAAGAGTCAAATTTCACACACCTTACTCTCATTCCAAAGATCAAGGAACCAAAGCTTCCATCGGACTTAAGGCCTATTGCCCTTTGTAATGTTGTGTACAAGATTGCTTCGAAGGTTCTGGCGAACCGACTCAAGACCATTCTCCCCCATATCATCTCTCAGCTACAAAGCGCCTTTGTACCAGGCCGTCTTATCTCGGACAACACCTTGGTGGCTACTGAAGTGGCCCATTTTATGAAAAAGCTCCGCAGGCAGGCTGAGGGTTTCTTCTCTCTAAAATTGGATATTTCCAAAGCATACGATCGGTTGGAATGGCAGTACCTAGAGGCCATTTTACTTAAGCTAGGTTTTTGTCGGAGTTGGGTGAATGTTGTCCTTGCTACAGTGAAATCTGTTAGTTACTCCATCTTGATCAATGGCTCGCCAACAGGTTTTATCTTACCTTCTAGGGGTATACGTCAAGGTGATCCCCTATCTCCATACTTGTTCATACTGTGTGCAGAAGGTCTCTCTGCACTTATCTCCTCCTCTATTCAAAATGGCATCGTCAAAGGCCTCAAGATGACTCCCACAACCCCCACTCTCCATCATCTTCTTTTTGCGGATGATTGCTTCCTCTTTGGTGAAGCCTCGGCTCGTGAATGTCGAGCTTTTAAGCAGGTACTTTCTATTTATGCACGAGCTTCGGGACAACATATCAATTTACAGTATTCTAGTGTTGTTTTTAGCGGCAATTTCCATGCACAGGATAGGGCTACCCTAGCTGGCATTCTTGATGTGCAGTGTGTTAAAGAACATGGCTTATACTTGGGCTTACCTATCCAAGTTGGCCATAATAAGAAGGCTATTTTTGCATACCTGAAGGAGAAATTGTCTAAGAAACTCATTAGCTGGCGTGCAAAAATCCTGAGCTCTGGTGGTAAAGAACTGCTTATCAAGGCTGTCGCTCAAACCCTGCCTAACTATGTGATGAACTGCTATGCTTTACCTAAATCTATGTGTGATGAACTTCAACAGTTATGTTGCCAATTTTTTTGGGGAAGTACTGATGATAAGAGAAGAATTCATTGGCGGTCTTGGGAAAGAATGTGCCTTCCCAAAGAGAAAGGTGGTATGGGGTTTAAACATCTACACTCTCACAATCTAGCTATGCTATCGAAACAGGGCTGGAGGTTGCTCTCTCACCCGGAGTCACTTGTGGCACAAGTTTTTAAGGCTGTGTACTATCCTTTCGGGACCTTTCTTACTGCTGATATAGGGGACAGACCCTCCTACTCTTGGCGTAGCCTGATGGAAGCAAGGCCGGTGCTCCATGCTGGTCTACTTTGGCGTATTGGGGACGGTCAGTCAGTCAACATATGGGAGGATGATTGGATACCAACTGTCCCTCATTACTTGCTTTCTCGGCCTCCAGATTCAGTTTTTGAACCGGTTTCAGACCTGCTCAACTCGAACTCTTTGTCTTGGGACATTGCAGCAGTCCATGCCTGCTTTGATCCCCAGGTAGTCCCACAAGTTCTATCCATCCCGCTTAGCAGTCGCTTTGGACGCGATAGGATGTCGTGGAAGCTTGATAAGAAAGGTCTTTTCTCTGTAAAATCAGCGTATAAAGTTGCTTGTGATTTTTCAGTGGGTAATCTCTTTGCTTCTGCTTCTACTGGTGATCCATATGGACCGGTCTGGAAGGCACTGTGGCAGGCCAAAGTGCCCAGCAAAGTTGCCATATTTGGTTGGCGAGCAGCTCACAATCTTCTTCCCACCCGGACGGCTCTGACCTTGAAGGGCTATACTGGTCCTTTGCAGTGTGTGCTATGCGGTACACATGTTGAGACCTTGGAACATGTCTTCTGCAACTGCAGCTTTACGCAGGAAATCATTGGAACTCCTCCATTATCTATACCTATGTCTTCACTGTTTTGGAAAGACTGGCTACTAGAGCGAGCCCTCTCTATGGCTCCAAGAGAGTTTGATCAGTTCTTGGTTCTACTCTGGAATGTGTGGAGACACCGGAATGACAAATTGTGGAATAATCATACTCAAACCAGTGCTGCTATTGTGGCCATGACTATGGCTTGGTATGATGAATATCTACAAGCTCATGCTACTTCAGATGCTAAAACACGTGTTTGGACGAAACCTAGGAAGGTGTGGACTGTCCCAGAGGAAGGTTATTTGAAGCTCAATGTGGACGGGGCTTTCCTGATTTCCATTCTGTTTGGTGGTACGGGGGGAGTACTTAGAAACTCTCAGGGCCAGTTTCTAGCTGGCTTTTCCTCCAGAGTGGACTTTGTCACCTCTCCATTGCAGGTTGAATTACTTGCAGTGAAGTATGGATTGGAATTATTGCAGGCTATGCAGATTACTCATGCCATTGTTGAGAGTGATTGCTTAGTGGCTGTGCAGACTATTGCTTCTCTAGCCCCAGATTTCTCTCTCTTAAGTGCCCTCATTGCGGATATCCGCGGTTTGCTGGCTGGAAGTGCTAACCTACAGCTCCTCTATGTTCCTCGTCAGGCCAATACAGTAGCCCATCGATTGGCTAGTTTTAGTTTTGATTCAAATGTCCATCTTGACTGGTTTGTTAATGCTCTGGAGATTATCCTGGATGCCCTCATGTACGATTTCAATCGTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

1345

Amino Acids

152.28

Weight (kDa)

9.01

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 8 - 176 3e-06 Endonuclease/Exonuclease/phosphatase family
RVT_1 PF00078 484 - 709 3.8e-25 Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT PF13966 1009 - 1092 4.8e-17 zinc-binding in reverse transcriptase
RVT_3 PF13456 1195 - 1316 1.1e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 88
Acc36I ACCTGC 3 cut(s) 2050, 2850, 3697
AccB7I CCANNNNNTGG 3 cut(s) 294, 737, 3937
AccBSI CCGCTC 1 cut(s) 511
AccI GTMKAC 4 cut(s) 441, 1153, 1855, 2722
AccII CGCG 3 cut(s) 478, 2952, 3864
AclWI GGATC 8 cut(s) 235, 525, 548, 561, 1114, 1862, 2891, 3059
AcoI YGGCCR 3 cut(s) 781, 2230, 3459
AcsI RAATTY 5 cut(s) 363, 665, 1331, 1411, 2463
AcuI CTGAAG 5 cut(s) 252, 409, 1641, 2282, 3492
AcvI CACGTG 1 cut(s) 3524
AcyI GRCGYC 1 cut(s) 85
AflII CTTAAG 3 cut(s) 1468, 1739, 3838
AflIII ACRYGT 4 cut(s) 3223, 3241, 3521, 3523
AgeI ACCGGT 2 cut(s) 2830, 3076
AhdI GACNNNNNGTC 1 cut(s) 2746
AjnI CCWGG 6 cut(s) 23, 141, 563, 1582, 2901, 4002
AjuI GAANNNNNNNTTGG 4 cut(s) 2452, 2484, 3719, 3751
AleI CACNNNNGTG 1 cut(s) 1610
Alw21I GWGCWC 3 cut(s) 303, 2315, 2712
Alw26I GTCTC 7 cut(s) 538, 944, 1067, 1317, 1913, 3224, 3397
AlwI GGATC 8 cut(s) 235, 525, 548, 561, 1114, 1862, 2891, 3059
ApaI GGGCCC 1 cut(s) 1301
ApeKI GCWGC 5 cut(s) 751, 2876, 3140, 3258, 3449
ApoI RAATTY 5 cut(s) 363, 665, 1331, 1411, 2463
ArsI GACNNNNNNTTYG 4 cut(s) 449, 481, 2846, 2878
AsiGI ACCGGT 2 cut(s) 2830, 3076
Asp700I GAANNNNTTC 2 cut(s) 422, 1027
AspA2I CCTAGG 2 cut(s) 1199, 3539
AspLEI GCGC 4 cut(s) 116, 478, 1294, 1574
AsuC2I CCSGG 6 cut(s) 626, 1098, 1296, 1301, 2588, 3163
AsuHPI GGTGA 9 cut(s) 493, 752, 1007, 1777, 1877, 2036, 2576, 3074, 3685
AsuII TTCGAA 2 cut(s) 1031, 1511
AvaII GGWCC 6 cut(s) 392, 1086, 1159, 2637, 3074, 3194
AvrII CCTAGG 2 cut(s) 1199, 3539
BaeGI GKGCMC 3 cut(s) 1301, 3111, 3847
BaeI ACNNNNGTAYC 4 cut(s) 156, 189, 3210, 3243
BalI TGGCCA 2 cut(s) 2232, 3461
BamHI GGATCC 1 cut(s) 553
BanII GRGCYC 4 cut(s) 303, 1301, 2315, 3346
BauI CACGAG 2 cut(s) 2037, 2079
BbrPI CACGTG 1 cut(s) 3524
BbsI GAAGAC 2 cut(s) 3238, 3300
Bbv12I GWGCWC 3 cut(s) 303, 2315, 2712
BbvCI CCTCAGC 1 cut(s) 1659
BbvI GCAGC 5 cut(s) 763, 2888, 3152, 3270, 3436
BceAI ACGGC 4 cut(s) 120, 1352, 1572, 3183
BcgI CGANNNNNNTGC 2 cut(s) 2067, 2101
BciT130I CCWGG 6 cut(s) 25, 143, 565, 1584, 2903, 4004
BciVI GTATCC 1 cut(s) 2769
BclI TGATCA 2 cut(s) 1812, 3370
BcnI CCSGG 6 cut(s) 626, 1098, 1296, 1301, 2588, 3163
BcoDI GTCTC 7 cut(s) 538, 944, 1067, 1317, 1913, 3224, 3397
BfmI CTRYAG 5 cut(s) 31, 222, 1782, 3256, 3890
BfoI RGCGCY 2 cut(s) 1295, 1575
BfrI CTTAAG 3 cut(s) 1468, 1739, 3838
BfuAI ACCTGC 3 cut(s) 2050, 2850, 3697
BfuI GTATCC 1 cut(s) 2769
BisI GCNGC 7 cut(s) 512, 752, 2131, 2877, 3141, 3259, 3450
BlnI CCTAGG 2 cut(s) 1199, 3539
BlpI GCTNAGC 1 cut(s) 2933
BlsI GCNGC 7 cut(s) 513, 753, 2132, 2878, 3142, 3260, 3451
BmcAI AGTACT 2 cut(s) 2446, 3636
Bme18I GGWCC 6 cut(s) 392, 1086, 1159, 2637, 3074, 3194
BmeRI GACNNNNNGTC 1 cut(s) 2746
BmiI GGNNCC 7 cut(s) 555, 630, 1161, 1299, 1449, 2638, 3357
BmsI GCATC 8 cut(s) 52, 714, 1237, 1266, 1404, 1953, 3502, 3997
BoxI GACNNNNGTC 2 cut(s) 600, 655
BpiI GAAGAC 2 cut(s) 3238, 3300
BpmI CTGGAG 6 cut(s) 369, 547, 2590, 2796, 3661, 4013
Bpu10I CCTNAGC 4 cut(s) 179, 702, 1659, 2309
Bpu1102I GCTNAGC 1 cut(s) 2933
Bpu14I TTCGAA 2 cut(s) 1031, 1511
BpuEI CTTGAG 2 cut(s) 1517, 1943
BpuMI CCSGG 6 cut(s) 626, 1098, 1296, 1301, 2588, 3163
Bsa29I ATCGAT 1 cut(s) 3934
BsaAI YACGTR 1 cut(s) 3524
BsaBI GATNNNNATC 2 cut(s) 3486, 4026
BsaHI GRCGYC 1 cut(s) 85
BsaI GGTCTC 2 cut(s) 1913, 3224
BsaWI WCCGGW 5 cut(s) 806, 1156, 2830, 3076, 3408
BsaXI ACNNNNNCTCC 8 cut(s) 665, 695, 824, 854, 2258, 2288, 2654, 2684
Bse118I RCCGGY 3 cut(s) 2704, 2830, 3076
Bse1I ACTGG 8 cut(s) 538, 1081, 3064, 3196, 3332, 3444, 3655, 3980
Bse3DI GCAATG 3 cut(s) 2871, 3701, 3849
Bse8I GATNNNNATC 2 cut(s) 3486, 4026
BseBI CCWGG 6 cut(s) 25, 143, 565, 1584, 2903, 4004
BseCI ATCGAT 1 cut(s) 3934
BseJI GATNNNNATC 2 cut(s) 3486, 4026
BseMI GCAATG 3 cut(s) 2871, 3701, 3849
BseMII CTCAG 9 cut(s) 193, 319, 335, 1062, 1101, 1574, 1650, 2300, 3662
BseNI ACTGG 8 cut(s) 538, 1081, 3064, 3196, 3332, 3444, 3655, 3980
BseRI GAGGAG 7 cut(s) 293, 686, 922, 1915, 1918, 3276, 3887
BseSI GKGCMC 3 cut(s) 1301, 3111, 3847
BseXI GCAGC 5 cut(s) 763, 2888, 3152, 3270, 3436
BseYI CCCAGC 1 cut(s) 3110
BsgI GTGCAG 4 cut(s) 1899, 1920, 2201, 3821
Bsh1236I CGCG 3 cut(s) 478, 2952, 3864
Bsh1285I CGRYCG 1 cut(s) 1705
BshTI ACCGGT 2 cut(s) 2830, 3076
BshVI ATCGAT 1 cut(s) 3934
BsiEI CGRYCG 1 cut(s) 1705
BsiHKAI GWGCWC 3 cut(s) 303, 2315, 2712
BslFI GGGAC 9 cut(s) 588, 2103, 2650, 2675, 2753, 2771, 2882, 2894, 3542
BsmAI GTCTC 7 cut(s) 538, 944, 1067, 1317, 1913, 3224, 3397
BsmFI GGGAC 9 cut(s) 588, 2103, 2650, 2675, 2753, 2771, 2882, 2894, 3542
BsmI GAATGC 2 cut(s) 330, 2169
Bso31I GGTCTC 2 cut(s) 1913, 3224
Bsp119I TTCGAA 2 cut(s) 1031, 1511
Bsp120I GGGCCC 1 cut(s) 1297
Bsp1286I GDGCHC 7 cut(s) 303, 1301, 2315, 2712, 3111, 3346, 3847
Bsp1407I TGTACA 1 cut(s) 1497
Bsp1720I GCTNAGC 1 cut(s) 2933
BspCNI CTCAG 9 cut(s) 192, 318, 334, 1063, 1102, 1573, 1651, 2301, 3661
BspDI ATCGAT 1 cut(s) 3934
BspFNI CGCG 3 cut(s) 478, 2952, 3864
BspLI GGNNCC 7 cut(s) 555, 630, 1161, 1299, 1449, 2638, 3357
BspMAI CTGCAG 2 cut(s) 35, 3260
BspMI ACCTGC 3 cut(s) 2050, 2850, 3697
BspPI GGATC 8 cut(s) 235, 525, 548, 561, 1114, 1862, 2891, 3059
BspT104I TTCGAA 2 cut(s) 1031, 1511
BspTI CTTAAG 3 cut(s) 1468, 1739, 3838
BspTNI GGTCTC 2 cut(s) 1913, 3224
BsrBI CCGCTC 1 cut(s) 511
BsrDI GCAATG 3 cut(s) 2871, 3701, 3849
BsrFI RCCGGY 3 cut(s) 2704, 2830, 3076
BsrGI TGTACA 1 cut(s) 1497
BsrI ACTGG 8 cut(s) 538, 1081, 3064, 3196, 3332, 3444, 3655, 3980
BssAI RCCGGY 3 cut(s) 2704, 2830, 3076
BssNAI GTATAC 1 cut(s) 1856
BssNI GRCGYC 1 cut(s) 85
BssSI CACGAG 2 cut(s) 2037, 2079
BssT1I CCWWGG 5 cut(s) 335, 1199, 1608, 3234, 3539
Bst1107I GTATAC 1 cut(s) 1856
Bst2BI CACGAG 2 cut(s) 2037, 2079
Bst2UI CCWGG 6 cut(s) 25, 143, 565, 1584, 2903, 4004
BstACI GRCGYC 1 cut(s) 85
BstAFI CTTAAG 3 cut(s) 1468, 1739, 3838
BstAPI GCANNNNNTGC 3 cut(s) 2885, 3208, 3754
BstAUI TGTACA 1 cut(s) 1497
BstBAI YACGTR 1 cut(s) 3524
BstBI TTCGAA 2 cut(s) 1031, 1511
BstDSI CCRYGG 2 cut(s) 136, 3862
BstFNI CGCG 3 cut(s) 478, 2952, 3864
BstH2I RGCGCY 2 cut(s) 1295, 1575
BstHHI GCGC 4 cut(s) 116, 478, 1294, 1574
BstMAI GTCTC 7 cut(s) 538, 944, 1067, 1317, 1913, 3224, 3397
BstMCI CGRYCG 1 cut(s) 1705
BstNI CCWGG 6 cut(s) 25, 143, 565, 1584, 2903, 4004
BstNSI RCATGY 3 cut(s) 528, 3227, 3245
BstPAI GACNNNNGTC 2 cut(s) 600, 655
BstSFI CTRYAG 5 cut(s) 31, 222, 1782, 3256, 3890
BstSLI GKGCMC 3 cut(s) 1301, 3111, 3847
BstUI CGCG 3 cut(s) 478, 2952, 3864
BstV1I GCAGC 5 cut(s) 763, 2888, 3152, 3270, 3436
BstV2I GAAGAC 2 cut(s) 3238, 3300
BstX2I RGATCY 2 cut(s) 227, 553
BstXI CCANNNNNNTGG 1 cut(s) 3469
BstYI RGATCY 2 cut(s) 227, 553
BstZ17I GTATAC 1 cut(s) 1856
Bsu15I ATCGAT 1 cut(s) 3934
BsuI GTATCC 1 cut(s) 2769
BsuTUI ATCGAT 1 cut(s) 3934
BtgI CCRYGG 2 cut(s) 136, 3862
BtsI GCAGTG 3 cut(s) 2189, 3209, 3729
BveI ACCTGC 3 cut(s) 2050, 2850, 3697
CfoI GCGC 4 cut(s) 116, 478, 1294, 1574
Cfr10I RCCGGY 3 cut(s) 2704, 2830, 3076
Cfr42I CCGCGG 1 cut(s) 3865
ClaI ATCGAT 1 cut(s) 3934
CseI GACGC 2 cut(s) 94, 2958
CspAI ACCGGT 2 cut(s) 2830, 3076
DraI TTTAAA 2 cut(s) 664, 2524
DriI GACNNNNNGTC 1 cut(s) 2746
EaeI YGGCCR 3 cut(s) 781, 2230, 3459
Eam1105I GACNNNNNGTC 1 cut(s) 2746
EciI GGCGGA 1 cut(s) 172
Ecl136II GAGCTC 2 cut(s) 301, 2313
Eco130I CCWWGG 5 cut(s) 335, 1199, 1608, 3234, 3539
Eco147I AGGCCT 3 cut(s) 1265, 1474, 1956
Eco24I GRGCYC 4 cut(s) 303, 1301, 2315, 3346
Eco31I GGTCTC 2 cut(s) 1913, 3224
Eco32I GATATC 1 cut(s) 3859
Eco47I GGWCC 6 cut(s) 392, 1086, 1159, 2637, 3074, 3194
Eco53kI GAGCTC 2 cut(s) 301, 2313
Eco57I CTGAAG 5 cut(s) 252, 409, 1641, 2282, 3492
Eco72I CACGTG 1 cut(s) 3524
EcoICRI GAGCTC 2 cut(s) 301, 2313
EcoO109I RGGNCCY 1 cut(s) 2637
EcoRI GAATTC 1 cut(s) 2463
EcoRII CCWGG 6 cut(s) 23, 141, 563, 1582, 2901, 4002
EcoRV GATATC 1 cut(s) 3859
EcoT14I CCWWGG 5 cut(s) 335, 1199, 1608, 3234, 3539
EcoT38I GRGCYC 4 cut(s) 303, 1301, 2315, 3346
ErhI CCWWGG 5 cut(s) 335, 1199, 1608, 3234, 3539
FalI AAGNNNNNCTT 4 cut(s) 1250, 1282, 2316, 2348
FaqI GGGAC 9 cut(s) 588, 2103, 2650, 2675, 2753, 2771, 2882, 2894, 3542
FauI CCCGC 1 cut(s) 2937
FauNDI CATATG 2 cut(s) 2759, 3070
FbaI TGATCA 2 cut(s) 1812, 3370
FblI GTMKAC 4 cut(s) 441, 1153, 1855, 2722
Fnu4HI GCNGC 7 cut(s) 512, 752, 2131, 2877, 3141, 3259, 3450
FriOI GRGCYC 4 cut(s) 303, 1301, 2315, 3346
Fsp4HI GCNGC 7 cut(s) 512, 752, 2131, 2877, 3141, 3259, 3450
GlaI GCGC 4 cut(s) 115, 477, 1293, 1573
GluI GCNGC 7 cut(s) 512, 752, 2131, 2877, 3141, 3259, 3450
GsaI CCCAGC 1 cut(s) 3114
GsuI CTGGAG 6 cut(s) 369, 547, 2590, 2796, 3661, 4013
HaeII RGCGCY 2 cut(s) 1295, 1575
HgaI GACGC 2 cut(s) 94, 2958
HhaI GCGC 4 cut(s) 116, 478, 1294, 1574
Hin1I GRCGYC 1 cut(s) 85
Hin6I GCGC 4 cut(s) 114, 476, 1292, 1572
HinP1I GCGC 4 cut(s) 114, 476, 1292, 1572
HincII GTYRAC 2 cut(s) 442, 2755
HindII GTYRAC 2 cut(s) 442, 2755
HindIII AAGCTT 2 cut(s) 1454, 2969
HphI GGTGA 9 cut(s) 493, 752, 1007, 1777, 1877, 2036, 2576, 3074, 3685
Hpy99I CGWCG 4 cut(s) 74, 87, 110, 1041
HpyCH4IV ACGT 3 cut(s) 85, 1858, 3523
HpySE526I ACGT 3 cut(s) 85, 1858, 3523
Hsp92I GRCGYC 1 cut(s) 85
HspAI GCGC 4 cut(s) 114, 476, 1292, 1572
Ksp22I TGATCA 2 cut(s) 1812, 3370
KspI CCGCGG 1 cut(s) 3865
LmnI GCTCC 9 cut(s) 121, 298, 306, 473, 1240, 1650, 2715, 3361, 3900
Lsp1109I GCAGC 5 cut(s) 763, 2888, 3152, 3270, 3436
LweI GCATC 8 cut(s) 52, 714, 1237, 1266, 1404, 1953, 3502, 3997
MaeII ACGT 3 cut(s) 85, 1858, 3523
MaeIII GTNAC 5 cut(s) 933, 1001, 1799, 2592, 3691
MbiI CCGCTC 1 cut(s) 511
MboII GAAGA 8 cut(s) 1315, 1660, 1985, 2472, 3143, 3146, 3238, 3300
MflI RGATCY 2 cut(s) 227, 553
MhlI GDGCHC 7 cut(s) 303, 1301, 2315, 2712, 3111, 3346, 3847
MlsI TGGCCA 2 cut(s) 2232, 3461
MluNI TGGCCA 2 cut(s) 2232, 3461
MlyI GAGTC 6 cut(s) 969, 1142, 1415, 1524, 1960, 2600
MmeI TCCRAC 6 cut(s) 755, 779, 837, 1025, 1689, 1736
Mox20I TGGCCA 2 cut(s) 2232, 3461
MroXI GAANNNNTTC 2 cut(s) 422, 1027
MscI TGGCCA 2 cut(s) 2232, 3461
MslI CAYNNNNRTG 6 cut(s) 204, 897, 1023, 1610, 3411, 3467
Msp20I TGGCCA 2 cut(s) 2232, 3461
MspA1I CMGCKG 1 cut(s) 3864
MspCI CTTAAG 3 cut(s) 1468, 1739, 3838
MssI GTTTAAAC 1 cut(s) 2524
Mva1269I GAATGC 2 cut(s) 330, 2169
MvaI CCWGG 6 cut(s) 25, 143, 565, 1584, 2903, 4004
MvnI CGCG 3 cut(s) 478, 2952, 3864
NciI CCSGG 6 cut(s) 626, 1098, 1296, 1301, 2588, 3163
NdeI CATATG 2 cut(s) 2759, 3070
NlaIV GGNNCC 7 cut(s) 555, 630, 1161, 1299, 1449, 2638, 3357
NmeAIII GCCGAG 2 cut(s) 2012, 2785
NmuCI GTSAC 2 cut(s) 2592, 3691
NspI RCATGY 3 cut(s) 528, 3227, 3245
NspV TTCGAA 2 cut(s) 1031, 1511
OliI CACNNNNGTG 1 cut(s) 1610
PaeI GCATGC 1 cut(s) 528
PceI AGGCCT 3 cut(s) 1265, 1474, 1956
PciI ACATGT 2 cut(s) 3223, 3241
PcsI WCGNNNNNNNCGW 1 cut(s) 2044
PctI GAATGC 2 cut(s) 330, 2169
PdmI GAANNNNTTC 2 cut(s) 422, 1027
PfeI GAWTC 8 cut(s) 196, 255, 743, 844, 1033, 1048, 2816, 3956
PflFI GACNNNGTC 1 cut(s) 3689
PflMI CCANNNNNTGG 3 cut(s) 294, 737, 3937
PfoI TCCNGGA 1 cut(s) 4002
PinAI ACCGGT 2 cut(s) 2830, 3076
PkrI GCNGC 7 cut(s) 513, 753, 2132, 2878, 3142, 3260, 3451
Ple19I CGATCG 1 cut(s) 1705
PleI GAGTC 6 cut(s) 969, 1141, 1414, 1524, 1960, 2599
PmaCI CACGTG 1 cut(s) 3524
PmeI GTTTAAAC 1 cut(s) 2524
PmlI CACGTG 1 cut(s) 3524
PpsI GAGTC 6 cut(s) 969, 1141, 1414, 1524, 1960, 2599
Ppu21I YACGTR 1 cut(s) 3524
PpuMI RGGWCCY 1 cut(s) 2637
PscI ACATGT 2 cut(s) 3223, 3241
PshAI GACNNNNGTC 2 cut(s) 600, 655
Psp124BI GAGCTC 2 cut(s) 303, 2315
Psp5II RGGWCCY 1 cut(s) 2637
Psp6I CCWGG 6 cut(s) 23, 141, 563, 1582, 2901, 4002
PspCI CACGTG 1 cut(s) 3524
PspFI CCCAGC 1 cut(s) 3110
PspGI CCWGG 6 cut(s) 23, 141, 563, 1582, 2901, 4002
PspN4I GGNNCC 7 cut(s) 555, 630, 1161, 1299, 1449, 2638, 3357
PspOMI GGGCCC 1 cut(s) 1297
PspPPI RGGWCCY 1 cut(s) 2637
PstI CTGCAG 2 cut(s) 35, 3260
PsuI RGATCY 2 cut(s) 227, 553
PsyI GACNNNGTC 1 cut(s) 3689
PvuI CGATCG 1 cut(s) 1705
RseI CAYNNNNRTG 6 cut(s) 204, 897, 1023, 1610, 3411, 3467
SacI GAGCTC 2 cut(s) 303, 2315
SacII CCGCGG 1 cut(s) 3865
SalI GTCGAC 1 cut(s) 440
SatI GCNGC 7 cut(s) 512, 752, 2131, 2877, 3141, 3259, 3450
ScaI AGTACT 2 cut(s) 2446, 3636
SchI GAGTC 6 cut(s) 969, 1142, 1415, 1524, 1960, 2600
SduI GDGCHC 7 cut(s) 303, 1301, 2315, 2712, 3111, 3346, 3847
SfaNI GCATC 8 cut(s) 52, 714, 1237, 1266, 1404, 1953, 3502, 3997
SfcI CTRYAG 5 cut(s) 31, 222, 1782, 3256, 3890
Sfr303I CCGCGG 1 cut(s) 3865
SfuI TTCGAA 2 cut(s) 1031, 1511
SgrBI CCGCGG 1 cut(s) 3865
SinI GGWCC 6 cut(s) 392, 1086, 1159, 2637, 3074, 3194
SmiMI CAYNNNNRTG 6 cut(s) 204, 897, 1023, 1610, 3411, 3467
SmlI CTYRAG 5 cut(s) 1468, 1532, 1739, 1958, 3838
SmoI CTYRAG 5 cut(s) 1468, 1532, 1739, 1958, 3838
SphI GCATGC 1 cut(s) 528
SseBI AGGCCT 3 cut(s) 1265, 1474, 1956
SstI GAGCTC 2 cut(s) 303, 2315
StuI AGGCCT 3 cut(s) 1265, 1474, 1956
StyI CCWWGG 5 cut(s) 335, 1199, 1608, 3234, 3539
TaiI ACGT 3 cut(s) 88, 1861, 3526
TaqII GACCGA 1 cut(s) 645
TatI WGTACW 4 cut(s) 1497, 2444, 2622, 3634
TauI GCSGC 2 cut(s) 514, 2133
TfiI GAWTC 8 cut(s) 196, 255, 743, 844, 1033, 1048, 2816, 3956
TseFI GTSAC 2 cut(s) 2592, 3691
TseI GCWGC 5 cut(s) 751, 2876, 3140, 3258, 3449
Tsp45I GTSAC 2 cut(s) 2592, 3691
TspGWI ACGGA 2 cut(s) 845, 1361
Tth111I GACNNNGTC 1 cut(s) 3689
Van91I CCANNNNNTGG 3 cut(s) 294, 737, 3937
Vha464I CTTAAG 3 cut(s) 1468, 1739, 3838
VpaK11BI GGWCC 6 cut(s) 392, 1086, 1159, 2637, 3074, 3194
XapI RAATTY 5 cut(s) 363, 665, 1331, 1411, 2463
XceI RCATGY 3 cut(s) 528, 3227, 3245
XcmI CCANNNNNNNNNTGG 2 cut(s) 511, 3662
XmaJI CCTAGG 2 cut(s) 1199, 3539
XmiI GTMKAC 4 cut(s) 441, 1153, 1855, 2722
XmnI GAANNNNTTC 2 cut(s) 422, 1027
ZraI GACGTC 1 cut(s) 86
ZrmI AGTACT 2 cut(s) 2446, 3636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.