Rh6BG268500

Auxin-induced in root cultures protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
48629819 .. 48631662
1844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG268500.1

Sequence Viewer

Length: 1149 bp
ATGGCTTCTTCTTCATCTTCTTCTTGTGCTAACCAGAACTTGGCGACGCTAATCTCACTGACTGTGATTCTGCTAATCTCACCCGCGTATTCCCAGAGCTGCTCGTCCCAGTCCTTCGCCAACAAAATGCTCTACACCCAATGCGCCGACCTCCCAACCCTCAGCTCTGCCCTCCACTGGTACTACGACTCCGCCAACTCCACTCTCGCCATCGCCTTCATCGCGCCGCCGGCAAAGCCCGCCGGATGGACCTCCTGGGCCATCAACCCCACCGGCACCGGCATGGCCGGGGCCCAAACGCTCCTCGCCTACAAAACCTCCTCCGGCGCCATGGCCGTCAAGACCTTCAACATCAGCTCCTACAGCTCCATCGTACCCGGAAAGCTCGCCTTCGACGTCTGGGACACGGCCGCTGAGTCCTCCGGCGGGGTCTTCCGGTTGTTTGCCAAGCTGAAGGTGAAGACTGGGCAGGTGAACCACGTCTGGCAGGTGGGGCCGTCCGTCGTAGATGGGTTTCCGGCGAAGCATGCTTTTGATGCACCCAATCTTCAGGCTAAAGGGACTCTCACCTTGACCGGAACTAATGCCGGTGTCACCGGGGCCGGAGCCGATCCCAAGTTGAAGGACAGGAATATTCATGGAATTCTGAATGCTGTGAGTTGGGGGTTTTTGTTTCCACTGGGGATCATTATAGCAAGGTACATCAGGACTTTTCCGTCTGCGGATCCTGCATGGTTTTATCTCCATATATCCTGCCAAATATCTGCTTATGCCATCGGTGTCGCCGGCTGGGCCACCGGGCTGAAGCTTGGAAGGGGTGAATACACCACCCACCGCAACATCGGAATTACCCTCTTCGCCTTTGCAACTGTGCAGATGCTTGCATTGTTCTTGAGACCTGGTAAGGATCACAAGTACAGGCTCTACTGGAACATCTACCACCACAGCGTTGGATATGCGATTCTAGTGCTTGGCATTGTGAATATTTTCAAAGGCTTAGACATACTAAATCCTACTAACCATTGGAAAACCGCTTACATAATTGCCATCTGTGTGTTGGGTGGGATCGCCGTAGTCTTGGAAATATTGACTTGGATTGTTGTACTAAACAGAAGGTCAAGTAAGTCCACAAAGCCATACGATGGATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

382

Amino Acids

41.09

Weight (kDa)

9.54

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 95 - 191 4.2e-27 Protein of unknown function (DUF568)
Cytochrom_B561 PF03188 213 - 333 3.7e-07 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 460, 478
AasI GACNNNNNNGTC 1 cut(s) 715
AatII GACGTC 1 cut(s) 399
Acc36I ACCTGC 2 cut(s) 460, 478
AccB1I GGYRCC 2 cut(s) 275, 326
AccB7I CCANNNNNTGG 2 cut(s) 40, 1142
AccII CGCG 2 cut(s) 86, 224
AciI CCGC 9 cut(s) 84, 192, 227, 240, 411, 426, 722, 835, 1032
AclWI GGATC 6 cut(s) 605, 692, 719, 732, 915, 1073
AcoI YGGCCR 3 cut(s) 285, 333, 408
AcsI RAATTY 1 cut(s) 642
AcuI CTGAAG 3 cut(s) 473, 533, 824
AcyI GRCGYC 2 cut(s) 327, 396
AfaI GTAC 5 cut(s) 182, 375, 701, 917, 1104
AfiI CCNNNNNNNGG 5 cut(s) 40, 177, 246, 426, 1142
AgsI TTSAA 3 cut(s) 349, 622, 991
AjiI CACGTC 1 cut(s) 481
AjnI CCWGG 2 cut(s) 254, 898
AluBI AGCT 7 cut(s) 99, 165, 357, 366, 385, 451, 808
AluI AGCT 7 cut(s) 99, 165, 357, 366, 385, 451, 808
Alw26I GTCTC 1 cut(s) 889
AlwI GGATC 6 cut(s) 605, 692, 719, 732, 915, 1073
AoxI GGCC 8 cut(s) 258, 285, 291, 333, 408, 494, 600, 792
ApaI GGGCCC 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 642
Asp700I GAANNNNTTC 1 cut(s) 986
AspLEI GCGC 3 cut(s) 146, 226, 329
AspS9I GGNCC 7 cut(s) 249, 258, 291, 292, 494, 600, 792
AsuC2I CCSGG 4 cut(s) 289, 378, 598, 799
AsuHPI GGTGA 6 cut(s) 72, 469, 484, 559, 586, 830
AvaII GGWCC 1 cut(s) 249
BaeGI GKGCMC 1 cut(s) 295
BamHI GGATCC 1 cut(s) 724
BanI GGYRCC 2 cut(s) 275, 326
BanII GRGCYC 1 cut(s) 295
BbsI GAAGAC 2 cut(s) 424, 467
BbvCI CCTCAGC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 86
BccI CCATC 8 cut(s) 218, 240, 269, 377, 503, 782, 1055, 1136
BceAI ACGGC 4 cut(s) 320, 423, 481, 1055
BcgI CGANNNNNNTGC 2 cut(s) 949, 983
BciT130I CCWGG 2 cut(s) 256, 900
BcnI CCSGG 4 cut(s) 289, 378, 598, 799
BcoDI GTCTC 1 cut(s) 889
BfaI CTAG 1 cut(s) 965
BfmI CTRYAG 1 cut(s) 361
BfoI RGCGCY 1 cut(s) 330
BfuAI ACCTGC 2 cut(s) 460, 478
BglI GCCNNNNNGGC 1 cut(s) 791
BisI GCNGC 3 cut(s) 100, 227, 411
BlsI GCNGC 3 cut(s) 101, 228, 412
Bme1390I CCNGG 6 cut(s) 256, 289, 378, 598, 799, 900
Bme18I GGWCC 1 cut(s) 249
BmgBI CACGTC 1 cut(s) 481
BmgT120I GGNCC 7 cut(s) 249, 258, 291, 292, 494, 600, 792
BmiI GGNNCC 8 cut(s) 277, 292, 293, 328, 495, 601, 607, 726
BmrFI CCNGG 6 cut(s) 256, 289, 378, 598, 799, 900
BmrI ACTGGG 3 cut(s) 103, 474, 689
BmsI GCATC 2 cut(s) 526, 867
BmuI ACTGGG 3 cut(s) 103, 474, 689
BpiI GAAGAC 2 cut(s) 424, 467
Bpu10I CCTNAGC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 913
BpuMI CCSGG 4 cut(s) 289, 378, 598, 799
BsaHI GRCGYC 2 cut(s) 327, 396
BsaI GGTCTC 1 cut(s) 889
BsaJI CCNNGG 4 cut(s) 255, 288, 330, 597
BsaWI WCCGGW 2 cut(s) 435, 575
BsaXI ACNNNNNCTCC 6 cut(s) 173, 203, 302, 332, 341, 371
Bsc4I CCNNNNNNNGG 5 cut(s) 40, 177, 246, 426, 1142
Bse118I RCCGGY 5 cut(s) 229, 272, 278, 587, 785
Bse1I ACTGG 5 cut(s) 109, 182, 469, 684, 932
BseBI CCWGG 2 cut(s) 256, 900
BseDI CCNNGG 4 cut(s) 255, 288, 330, 597
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 5 cut(s) 40, 177, 246, 426, 1142
BseMII CTCAG 2 cut(s) 175, 405
BseNI ACTGG 5 cut(s) 109, 182, 469, 684, 932
BseRI GAGGAG 2 cut(s) 293, 310
BseSI GKGCMC 1 cut(s) 295
BseX3I CGGCCG 1 cut(s) 408
BseXI GCAGC 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 789
BsgI GTGCAG 1 cut(s) 893
Bsh1236I CGCG 2 cut(s) 86, 224
Bsh1285I CGRYCG 1 cut(s) 411
BshFI GGCC 8 cut(s) 260, 287, 293, 335, 410, 496, 602, 794
BshNI GGYRCC 2 cut(s) 275, 326
BsiEI CGRYCG 1 cut(s) 411
BslFI GGGAC 3 cut(s) 91, 416, 574
BslI CCNNNNNNNGG 5 cut(s) 40, 177, 246, 426, 1142
BsmAI GTCTC 1 cut(s) 889
BsmFI GGGAC 3 cut(s) 91, 416, 574
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 8 cut(s) 260, 287, 293, 335, 410, 496, 602, 794
Bso31I GGTCTC 1 cut(s) 889
Bsp120I GGGCCC 1 cut(s) 291
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 5 cut(s) 610, 684, 724, 907, 1065
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 9 cut(s) 84, 192, 227, 240, 411, 426, 722, 835, 1032
BspANI GGCC 8 cut(s) 260, 287, 293, 335, 410, 496, 602, 794
BspCNI CTCAG 2 cut(s) 174, 406
BspFNI CGCG 2 cut(s) 86, 224
BspLI GGNNCC 8 cut(s) 277, 292, 293, 328, 495, 601, 607, 726
BspMI ACCTGC 2 cut(s) 460, 478
BspPI GGATC 6 cut(s) 605, 692, 719, 732, 915, 1073
BspT107I GGYRCC 2 cut(s) 275, 326
BspTNI GGTCTC 1 cut(s) 889
BsrFI RCCGGY 5 cut(s) 229, 272, 278, 587, 785
BsrI ACTGG 5 cut(s) 109, 182, 469, 684, 932
BssAI RCCGGY 5 cut(s) 229, 272, 278, 587, 785
BssECI CCNNGG 4 cut(s) 255, 288, 330, 597
BssMI GATC 5 cut(s) 610, 684, 724, 907, 1065
BssNI GRCGYC 2 cut(s) 327, 396
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 2 cut(s) 256, 900
Bst4CI ACNGT 2 cut(s) 64, 871
Bst6I CTCTTC 1 cut(s) 860
BstACI GRCGYC 2 cut(s) 327, 396
BstC8I GCNNGC 6 cut(s) 231, 240, 387, 528, 787, 882
BstDEI CTNAG 3 cut(s) 161, 414, 997
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 251
BstFNI CGCG 2 cut(s) 86, 224
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 3 cut(s) 146, 226, 329
BstKTI GATC 5 cut(s) 613, 687, 727, 910, 1068
BstMAI GTCTC 1 cut(s) 889
BstMBI GATC 5 cut(s) 610, 684, 724, 907, 1065
BstMCI CGRYCG 1 cut(s) 411
BstNI CCWGG 2 cut(s) 256, 900
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 6 cut(s) 254, 287, 376, 596, 797, 898
BstSFI CTRYAG 1 cut(s) 361
BstSLI GKGCMC 1 cut(s) 295
BstUI CGCG 2 cut(s) 86, 224
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 2 cut(s) 424, 467
BstX2I RGATCY 1 cut(s) 724
BstXI CCANNNNNNTGG 1 cut(s) 950
BstYI RGATCY 1 cut(s) 724
BstZI CGGCCG 1 cut(s) 408
BsuRI GGCC 8 cut(s) 260, 287, 293, 335, 410, 496, 602, 794
BtgI CCRYGG 1 cut(s) 330
BtgZI GCGATG 2 cut(s) 196, 205
BtrI CACGTC 1 cut(s) 481
BtsCI GGATG 1 cut(s) 251
BtsIMutI CAGTG 3 cut(s) 56, 175, 677
BveI ACCTGC 2 cut(s) 460, 478
Cac8I GCNNGC 6 cut(s) 231, 240, 387, 528, 787, 882
CfoI GCGC 3 cut(s) 146, 226, 329
Cfr10I RCCGGY 5 cut(s) 229, 272, 278, 587, 785
Cfr13I GGNCC 7 cut(s) 249, 258, 291, 292, 494, 600, 792
CseI GACGC 1 cut(s) 55
CsiI ACCWGGT 1 cut(s) 898
Csp6I GTAC 5 cut(s) 181, 374, 700, 916, 1103
CviAII CATG 5 cut(s) 283, 331, 527, 638, 732
CviQI GTAC 5 cut(s) 181, 374, 700, 916, 1103
DdeI CTNAG 3 cut(s) 161, 414, 997
DinI GGCGCC 1 cut(s) 328
DpnI GATC 5 cut(s) 612, 686, 726, 909, 1067
DpnII GATC 5 cut(s) 610, 684, 724, 907, 1065
DrdI GACNNNNNNGTC 1 cut(s) 715
DseDI GACNNNNNNGTC 1 cut(s) 715
EaeI YGGCCR 3 cut(s) 285, 333, 408
EagI CGGCCG 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 860
EarI CTCTTC 1 cut(s) 860
EciI GGCGGA 1 cut(s) 181
EclXI CGGCCG 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 330
Eco24I GRGCYC 1 cut(s) 295
Eco31I GGTCTC 1 cut(s) 889
Eco47I GGWCC 1 cut(s) 249
Eco52I CGGCCG 1 cut(s) 408
Eco57I CTGAAG 3 cut(s) 473, 533, 824
EcoO109I RGGNCCY 1 cut(s) 291
EcoRI GAATTC 1 cut(s) 642
EcoRII CCWGG 2 cut(s) 254, 898
EcoT14I CCWWGG 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 295
EgeI GGCGCC 1 cut(s) 328
EheI GGCGCC 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 5 cut(s) 286, 334, 530, 641, 735
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 3 cut(s) 91, 416, 574
FatI CATG 5 cut(s) 282, 330, 526, 637, 731
FauI CCCGC 3 cut(s) 91, 247, 419
Fnu4HI GCNGC 3 cut(s) 100, 227, 411
FokI GGATG 1 cut(s) 258
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 3 cut(s) 100, 227, 411
FspBI CTAG 1 cut(s) 965
GlaI GCGC 3 cut(s) 145, 225, 328
GluI GCNGC 3 cut(s) 100, 227, 411
GsaI CCCAGC 1 cut(s) 793
HaeII RGCGCY 1 cut(s) 330
HaeIII GGCC 8 cut(s) 260, 287, 293, 335, 410, 496, 602, 794
HgaI GACGC 1 cut(s) 55
HhaI GCGC 3 cut(s) 146, 226, 329
Hin1I GRCGYC 2 cut(s) 327, 396
Hin1II CATG 5 cut(s) 286, 334, 530, 641, 735
Hin6I GCGC 3 cut(s) 144, 224, 327
HinP1I GCGC 3 cut(s) 144, 224, 327
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 5 cut(s) 67, 188, 416, 562, 961
HphI GGTGA 6 cut(s) 72, 469, 484, 559, 586, 830
Hpy166II GTNNAC 2 cut(s) 475, 1128
Hpy188I TCNGA 2 cut(s) 648, 845
Hpy188III TCNNGA 3 cut(s) 340, 706, 892
Hpy8I GTNNAC 2 cut(s) 475, 1128
Hpy99I CGWCG 3 cut(s) 49, 398, 506
HpyAV CCTTC 8 cut(s) 124, 226, 355, 400, 448, 616, 807, 1107
HpyCH4III ACNGT 2 cut(s) 64, 871
HpyCH4IV ACGT 2 cut(s) 396, 480
HpyCH4V TGCA 5 cut(s) 539, 731, 866, 874, 884
HpyF3I CTNAG 3 cut(s) 161, 414, 997
HpySE526I ACGT 2 cut(s) 396, 480
Hsp92I GRCGYC 2 cut(s) 327, 396
Hsp92II CATG 5 cut(s) 286, 334, 530, 641, 735
HspAI GCGC 3 cut(s) 144, 224, 327
KasI GGCGCC 1 cut(s) 326
KroI GCCGGC 2 cut(s) 229, 785
KroNI GCCGGC 2 cut(s) 231, 787
Kzo9I GATC 5 cut(s) 610, 684, 724, 907, 1065
LmnI GCTCC 4 cut(s) 306, 362, 371, 605
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 2 cut(s) 526, 867
MabI ACCWGGT 1 cut(s) 898
MaeI CTAG 1 cut(s) 965
MaeII ACGT 2 cut(s) 396, 480
MaeIII GTNAC 1 cut(s) 592
MalI GATC 5 cut(s) 612, 686, 726, 909, 1067
MboI GATC 5 cut(s) 610, 684, 724, 907, 1065
MboII GAAGA 7 cut(s) 3, 9, 12, 424, 472, 539, 847
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 3 cut(s) 642, 846, 1041
Mly113I GGCGCC 1 cut(s) 327
MlyI GAGTC 3 cut(s) 182, 425, 556
MmeI TCCRAC 1 cut(s) 931
MnlI CCTC 9 cut(s) 161, 170, 182, 262, 314, 328, 331, 430, 863
MroNI GCCGGC 2 cut(s) 229, 785
MroXI GAANNNNTTC 1 cut(s) 986
MslI CAYNNNNRTG 2 cut(s) 281, 1052
MspA1I CMGCKG 1 cut(s) 413
MspR9I CCNGG 6 cut(s) 256, 289, 378, 598, 799, 900
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 2 cut(s) 256, 900
MvnI CGCG 2 cut(s) 86, 224
NaeI GCCGGC 2 cut(s) 231, 787
NarI GGCGCC 1 cut(s) 327
NciI CCSGG 4 cut(s) 289, 378, 598, 799
NcoI CCATGG 1 cut(s) 330
NdeII GATC 5 cut(s) 610, 684, 724, 907, 1065
NgoMIV GCCGGC 2 cut(s) 229, 785
NlaIII CATG 5 cut(s) 286, 334, 530, 641, 735
NlaIV GGNNCC 8 cut(s) 277, 292, 293, 328, 495, 601, 607, 726
NmuCI GTSAC 1 cut(s) 592
NspI RCATGY 1 cut(s) 530
PaeI GCATGC 1 cut(s) 530
PaqCI CACCTGC 2 cut(s) 460, 478
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PctI GAATGC 1 cut(s) 655
PdiI GCCGGC 2 cut(s) 231, 787
PdmI GAANNNNTTC 1 cut(s) 986
PfeI GAWTC 2 cut(s) 67, 961
PflMI CCANNNNNTGG 2 cut(s) 40, 1142
PkrI GCNGC 3 cut(s) 101, 228, 412
PleI GAGTC 3 cut(s) 182, 424, 556
PluTI GGCGCC 1 cut(s) 330
PpsI GAGTC 3 cut(s) 182, 424, 556
Psp6I CCWGG 2 cut(s) 254, 898
PspFI CCCAGC 1 cut(s) 789
PspGI CCWGG 2 cut(s) 254, 898
PspN4I GGNNCC 8 cut(s) 277, 292, 293, 328, 495, 601, 607, 726
PspOMI GGGCCC 1 cut(s) 291
PspPI GGNCC 7 cut(s) 249, 258, 291, 292, 494, 600, 792
PsuI RGATCY 1 cut(s) 724
RsaI GTAC 5 cut(s) 182, 375, 701, 917, 1104
RsaNI GTAC 5 cut(s) 181, 374, 700, 916, 1103
RseI CAYNNNNRTG 2 cut(s) 281, 1052
SatI GCNGC 3 cut(s) 100, 227, 411
Sau3AI GATC 5 cut(s) 610, 684, 724, 907, 1065
Sau96I GGNCC 7 cut(s) 249, 258, 291, 292, 494, 600, 792
SchI GAGTC 3 cut(s) 182, 425, 556
ScrFI CCNGG 6 cut(s) 256, 289, 378, 598, 799, 900
SduI GDGCHC 1 cut(s) 295
SexAI ACCWGGT 1 cut(s) 898
SfaNI GCATC 2 cut(s) 526, 867
SfcI CTRYAG 1 cut(s) 361
SfoI GGCGCC 1 cut(s) 328
SinI GGWCC 1 cut(s) 249
SmiMI CAYNNNNRTG 2 cut(s) 281, 1052
SmlI CTYRAG 1 cut(s) 892
SmoI CTYRAG 1 cut(s) 892
SphI GCATGC 1 cut(s) 530
Sse9I AATT 3 cut(s) 642, 846, 1041
SsiI CCGC 9 cut(s) 84, 192, 227, 240, 411, 426, 722, 835, 1032
SspDI GGCGCC 1 cut(s) 326
SspI AATATT 3 cut(s) 634, 985, 1086
SspMI CTAG 1 cut(s) 965
StyD4I CCNGG 6 cut(s) 254, 287, 376, 596, 797, 898
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 2 cut(s) 64, 871
TaiI ACGT 2 cut(s) 399, 483
TaqI TCGA 1 cut(s) 393
TasI AATT 3 cut(s) 642, 846, 1041
TatI WGTACW 2 cut(s) 915, 1102
TauI GCSGC 2 cut(s) 229, 413
TfiI GAWTC 2 cut(s) 67, 961
TscAI CASTG 3 cut(s) 63, 182, 684
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 1 cut(s) 99
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 2 cut(s) 208, 626
TspGWI ACGGA 2 cut(s) 490, 705
TspRI CASTG 3 cut(s) 63, 182, 684
Van91I CCANNNNNTGG 2 cut(s) 40, 1142
VpaK11BI GGWCC 1 cut(s) 249
XapI RAATTY 1 cut(s) 642
XceI RCATGY 1 cut(s) 530
XcmI CCANNNNNNNNNTGG 2 cut(s) 947, 1054
XmnI GAANNNNTTC 1 cut(s) 986
XspI CTAG 1 cut(s) 965
ZraI GACGTC 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.