MD10G1153700.v1.1

Auxin-induced in root cultures protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
24112860 .. 24115109
2250 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1153700.v1.1.491

Sequence Viewer

Length: 1164 bp
ATGGCTTCTTCTTCCTCCTCCTCTTCTCTCCCAATATTCCTACCACTCACCCTCCTTTTGCTAATCTCACCCGCGCTTTCCCTCACCTGCACCTCCCAAACCTTCACCAACAACAAGCTCTACTCGAAATGCGCCGACCTCCCCGTCCTCAGCTCCTTCCTCCACTGGACCTACGACCCCGCCAACTCCACCCTCTCCATCGCCTTCATCGCCCCACCCTCTAAAACCGAAGGCTGGATCGCCTGGGCCATCAACCCGAAGGCTACCGGGATGGCTGGGTCCCAGACCCTCCTCGCCTACAAGAAGTCCGACGGCTCTATGGACGTTAAAACCTTCAGCATCAGCTCGTACAAGGATATTGTGGAGTCGAAATTGTCGTTCAACGTGTGGGACACTGCCGCCGAGTCGTCCGGCGGCGTTTACAGGCTGTTTGCGAAGTTGAAGGTAGAGAAGGAGAAGGTGAACCAGGTTTGGCAGGTGGGGCCCTCTGTTACCGATGGGTTTCCGGCTAAACACGACTTCCTGATGCCGAATCTTAACGCGAAAGGGACTCTGAGCTTGACCGGCGGCACCACCACCACAACCGCCAGCGGGGGTTCGAAGATGAAGAAGAGAAATATCCATGGAATTTTGAATGCTGTGAGTTGGGGACTGTTGTTTCCAATTGGAATCATCGTAGCAAGATACCTGAGGGCTTTTCCGTCTGCCGATCCAGCTTGGTTTTATCTTCATATATTCTGCCAGGTATCTGGTTATGCAATCGGTGTCGCCGGCTGGGCCACCGGAATTAAGCTCGGAAGTGAGTCCAAGGGGGTGGTTTACACCCATCACCGTAACATCGGAATCACTCTGTTTGCCTTAGCAACTCTGCAGATTTTCGCATTGTTCTTGAGGCCGAAGAAGGAGCACAAGTTCAGGTTCTACTGGAACATCTACCACCACAGTCTCGGATACACGATTCTCGTCCTGGGCATTATAAATGTGTTCAAAGGCCTAGACATACTAAATCCTGCTAAGCATTGGAAATCCGCTTACATAATTGTGATCATTGCATTGGGCGCAATTGCATTGTTATTGGAAGCAATTACTTGGATTTTAGTCTTGAAGAGAAAGTCAAGTAAGTCCACCAAGCCGTATGATGGATTCAACAACGGACAAGGCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

388

Amino Acids

42.32

Weight (kDa)

9.73

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 91 - 187 8.3e-28 Protein of unknown function (DUF568)
Cytochrom_B561 PF03188 208 - 332 1.2e-07 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 977
AarI CACCTGC 2 cut(s) 95, 466
AasI GACNNNNNNGTC 1 cut(s) 143
Acc36I ACCTGC 2 cut(s) 95, 466
AccB1I GGYRCC 1 cut(s) 569
AccII CGCG 2 cut(s) 74, 542
AciI CCGC 8 cut(s) 72, 180, 399, 414, 567, 585, 591, 1029
AclWI GGATC 2 cut(s) 245, 704
AcsI RAATTY 1 cut(s) 627
AcuI CTGAAG 1 cut(s) 319
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 3 cut(s) 234, 591, 1139
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 6 cut(s) 382, 442, 634, 988, 1105, 1147
AjnI CCWGG 4 cut(s) 242, 465, 741, 966
AloI GAACNNNNNNTCC 2 cut(s) 896, 928
AluBI AGCT 6 cut(s) 118, 153, 345, 558, 716, 793
AluI AGCT 6 cut(s) 118, 153, 345, 558, 716, 793
Alw21I GWGCWC 1 cut(s) 909
Alw26I GTCTC 1 cut(s) 950
AlwI GGATC 2 cut(s) 245, 704
AoxI GGCC 5 cut(s) 246, 482, 777, 893, 991
ApaI GGGCCC 1 cut(s) 486
ApoI RAATTY 1 cut(s) 627
AspLEI GCGC 3 cut(s) 76, 134, 1061
AspS9I GGNCC 6 cut(s) 168, 246, 279, 482, 483, 777
AsuC2I CCSGG 1 cut(s) 268
AsuHPI GGTGA 6 cut(s) 40, 60, 76, 97, 472, 821
AsuII TTCGAA 1 cut(s) 599
AvaII GGWCC 2 cut(s) 168, 279
AxyI CCTNAGG 1 cut(s) 689
BaeGI GKGCMC 1 cut(s) 486
BanI GGYRCC 1 cut(s) 569
BanII GRGCYC 1 cut(s) 486
Bbv12I GWGCWC 1 cut(s) 909
BbvCI CCTCAGC 1 cut(s) 149
BccI CCATC 6 cut(s) 206, 257, 265, 491, 834, 1133
BceAI ACGGC 2 cut(s) 328, 1117
BciT130I CCWGG 4 cut(s) 244, 467, 743, 968
BciVI GTATCC 1 cut(s) 944
BclI TGATCA 1 cut(s) 1044
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 950
BfaI CTAG 1 cut(s) 995
BfmI CTRYAG 1 cut(s) 869
BfuAI ACCTGC 2 cut(s) 95, 466
BfuI GTATCC 1 cut(s) 944
BglI GCCNNNNNGGC 1 cut(s) 776
BisI GCNGC 3 cut(s) 399, 415, 568
BlpI GCTNAGC 1 cut(s) 1014
BlsI GCNGC 3 cut(s) 400, 416, 569
Bme1390I CCNGG 5 cut(s) 244, 268, 467, 743, 968
Bme18I GGWCC 2 cut(s) 168, 279
BmgT120I GGNCC 6 cut(s) 168, 246, 279, 482, 483, 777
BmiI GGNNCC 5 cut(s) 280, 281, 483, 484, 571
BmrFI CCNGG 5 cut(s) 244, 268, 467, 743, 968
BmsI GCATC 2 cut(s) 348, 516
Bpu10I CCTNAGC 2 cut(s) 149, 859
Bpu1102I GCTNAGC 1 cut(s) 1014
Bpu14I TTCGAA 1 cut(s) 599
BpuEI CTTGAG 1 cut(s) 910
BpuMI CCSGG 1 cut(s) 268
BsaJI CCNNGG 4 cut(s) 243, 622, 807, 967
BsaWI WCCGGW 1 cut(s) 782
BsaXI ACNNNNNCTCC 4 cut(s) 36, 66, 896, 926
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 591, 1139
Bse118I RCCGGY 2 cut(s) 563, 770
Bse1I ACTGG 2 cut(s) 170, 929
Bse21I CCTNAGG 1 cut(s) 689
Bse3DI GCAATG 1 cut(s) 1047
BseBI CCWGG 4 cut(s) 244, 467, 743, 968
BseDI CCNNGG 4 cut(s) 243, 622, 807, 967
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 3 cut(s) 234, 591, 1139
BseMI GCAATG 1 cut(s) 1047
BseMII CTCAG 3 cut(s) 163, 545, 680
BseNI ACTGG 2 cut(s) 170, 929
BseRI GAGGAG 3 cut(s) 7, 10, 281
BseSI GKGCMC 1 cut(s) 486
BseYI CCCAGC 2 cut(s) 275, 774
BsgI GTGCAG 1 cut(s) 73
Bsh1236I CGCG 2 cut(s) 74, 542
BshFI GGCC 5 cut(s) 248, 484, 779, 895, 993
BshNI GGYRCC 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 909
BsiSI CCGG 6 cut(s) 267, 411, 506, 564, 771, 783
BslFI GGGAC 4 cut(s) 265, 404, 562, 663
BslI CCNNNNNNNGG 3 cut(s) 234, 591, 1139
BsmAI GTCTC 1 cut(s) 950
BsmFI GGGAC 4 cut(s) 265, 404, 562, 663
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 5 cut(s) 248, 484, 779, 895, 993
Bsp119I TTCGAA 1 cut(s) 599
Bsp120I GGGCCC 1 cut(s) 482
Bsp1286I GDGCHC 2 cut(s) 486, 909
Bsp143I GATC 3 cut(s) 237, 709, 1044
Bsp1720I GCTNAGC 1 cut(s) 1014
Bsp19I CCATGG 1 cut(s) 622
BspACI CCGC 8 cut(s) 72, 180, 399, 414, 567, 585, 591, 1029
BspANI GGCC 5 cut(s) 248, 484, 779, 895, 993
BspCNI CTCAG 3 cut(s) 162, 546, 681
BspFNI CGCG 2 cut(s) 74, 542
BspLI GGNNCC 5 cut(s) 280, 281, 483, 484, 571
BspMAI CTGCAG 1 cut(s) 873
BspMI ACCTGC 2 cut(s) 95, 466
BspPI GGATC 2 cut(s) 245, 704
BspT104I TTCGAA 1 cut(s) 599
BspT107I GGYRCC 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 1047
BsrFI RCCGGY 2 cut(s) 563, 770
BsrI ACTGG 2 cut(s) 170, 929
BssAI RCCGGY 2 cut(s) 563, 770
BssECI CCNNGG 4 cut(s) 243, 622, 807, 967
BssMI GATC 3 cut(s) 237, 709, 1044
BssT1I CCWWGG 2 cut(s) 622, 807
Bst2UI CCWGG 4 cut(s) 244, 467, 743, 968
Bst4CI ACNGT 3 cut(s) 654, 833, 944
Bst6I CTCTTC 3 cut(s) 28, 605, 1100
BstBI TTCGAA 1 cut(s) 599
BstC8I GCNNGC 2 cut(s) 589, 772
BstDEI CTNAG 5 cut(s) 149, 554, 689, 859, 1014
BstDSI CCRYGG 1 cut(s) 622
BstF5I GGATG 1 cut(s) 276
BstFNI CGCG 2 cut(s) 74, 542
BstHHI GCGC 3 cut(s) 76, 134, 1061
BstKTI GATC 3 cut(s) 240, 712, 1047
BstMAI GTCTC 1 cut(s) 950
BstMBI GATC 3 cut(s) 237, 709, 1044
BstMWI GCNNNNNNNGC 6 cut(s) 209, 481, 564, 713, 776, 1058
BstNI CCWGG 4 cut(s) 244, 467, 743, 968
BstSCI CCNGG 5 cut(s) 242, 266, 465, 741, 966
BstSFI CTRYAG 1 cut(s) 869
BstSLI GKGCMC 1 cut(s) 486
BstUI CGCG 2 cut(s) 74, 542
BstXI CCANNNNNNTGG 2 cut(s) 749, 814
Bsu36I CCTNAGG 1 cut(s) 689
BsuI GTATCC 1 cut(s) 944
BsuRI GGCC 5 cut(s) 248, 484, 779, 895, 993
BtgI CCRYGG 1 cut(s) 622
BtgZI GCGATG 2 cut(s) 184, 193
BtsCI GGATG 1 cut(s) 276
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 2 cut(s) 163, 393
BveI ACCTGC 2 cut(s) 95, 466
Cac8I GCNNGC 2 cut(s) 589, 772
CfoI GCGC 3 cut(s) 76, 134, 1061
Cfr10I RCCGGY 2 cut(s) 563, 770
Cfr13I GGNCC 6 cut(s) 168, 246, 279, 482, 483, 777
CsiI ACCWGGT 1 cut(s) 465
Csp6I GTAC 1 cut(s) 349
CviAII CATG 1 cut(s) 623
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 5 cut(s) 149, 554, 689, 859, 1014
DpnI GATC 3 cut(s) 239, 711, 1046
DpnII GATC 3 cut(s) 237, 709, 1044
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
Eam1104I CTCTTC 3 cut(s) 28, 605, 1100
EarI CTCTTC 3 cut(s) 28, 605, 1100
Eco130I CCWWGG 2 cut(s) 622, 807
Eco147I AGGCCT 1 cut(s) 993
Eco24I GRGCYC 1 cut(s) 486
Eco47I GGWCC 2 cut(s) 168, 279
Eco57I CTGAAG 1 cut(s) 319
Eco81I CCTNAGG 1 cut(s) 689
EcoO109I RGGNCCY 3 cut(s) 279, 482, 483
EcoRII CCWGG 4 cut(s) 242, 465, 741, 966
EcoT14I CCWWGG 2 cut(s) 622, 807
EcoT38I GRGCYC 1 cut(s) 486
ErhI CCWWGG 2 cut(s) 622, 807
FaeI CATG 1 cut(s) 626
FaiI YATR 9 cut(s) 320, 624, 732, 734, 756, 977, 1001, 1037, 1137
FaqI GGGAC 4 cut(s) 265, 404, 562, 663
FatI CATG 1 cut(s) 622
FauI CCCGC 3 cut(s) 79, 187, 584
FbaI TGATCA 1 cut(s) 1044
Fnu4HI GCNGC 3 cut(s) 399, 415, 568
FokI GGATG 1 cut(s) 283
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 3 cut(s) 399, 415, 568
FspBI CTAG 1 cut(s) 995
GlaI GCGC 3 cut(s) 75, 133, 1060
GluI GCNGC 3 cut(s) 399, 415, 568
GsaI CCCAGC 2 cut(s) 279, 778
HaeIII GGCC 5 cut(s) 248, 484, 779, 895, 993
HapII CCGG 6 cut(s) 267, 411, 506, 564, 771, 783
HhaI GCGC 3 cut(s) 76, 134, 1061
Hin1II CATG 1 cut(s) 626
Hin6I GCGC 3 cut(s) 74, 132, 1059
HinP1I GCGC 3 cut(s) 74, 132, 1059
HinfI GANTC 9 cut(s) 365, 404, 532, 550, 669, 803, 843, 958, 1143
HpaII CCGG 6 cut(s) 267, 411, 506, 564, 771, 783
HphI GGTGA 6 cut(s) 40, 60, 76, 97, 472, 821
Hpy166II GTNNAC 4 cut(s) 421, 463, 820, 1125
Hpy188I TCNGA 5 cut(s) 310, 555, 797, 842, 950
Hpy188III TCNNGA 3 cut(s) 523, 889, 1102
Hpy8I GTNNAC 4 cut(s) 421, 463, 820, 1125
Hpy99I CGWCG 1 cut(s) 314
HpyCH4III ACNGT 3 cut(s) 654, 833, 944
HpyCH4IV ACGT 2 cut(s) 324, 384
HpyCH4V TGCA 5 cut(s) 90, 758, 871, 1052, 1067
HpyF10VI GCNNNNNNNGC 6 cut(s) 209, 481, 564, 713, 776, 1058
HpyF3I CTNAG 5 cut(s) 149, 554, 689, 859, 1014
HpySE526I ACGT 2 cut(s) 324, 384
Hsp92II CATG 1 cut(s) 626
HspAI GCGC 3 cut(s) 74, 132, 1059
KflI GGGWCCC 1 cut(s) 279
KroI GCCGGC 1 cut(s) 770
KroNI GCCGGC 1 cut(s) 772
Ksp22I TGATCA 1 cut(s) 1044
Kzo9I GATC 3 cut(s) 237, 709, 1044
LmnI GCTCC 2 cut(s) 158, 904
LweI GCATC 2 cut(s) 348, 516
MabI ACCWGGT 1 cut(s) 465
MaeI CTAG 1 cut(s) 995
MaeII ACGT 2 cut(s) 324, 384
MaeIII GTNAC 2 cut(s) 490, 833
MalI GATC 3 cut(s) 239, 711, 1046
MboI GATC 3 cut(s) 237, 709, 1044
MboII GAAGA 8 cut(s) 3, 15, 613, 619, 622, 719, 910, 1117
MfeI CAATTG 2 cut(s) 663, 1062
MhlI GDGCHC 2 cut(s) 486, 909
MluCI AATT 7 cut(s) 371, 627, 663, 786, 1038, 1062, 1083
MlyI GAGTC 4 cut(s) 374, 413, 544, 812
MmeI TCCRAC 1 cut(s) 333
MroNI GCCGGC 1 cut(s) 770
MseI TTAA 3 cut(s) 327, 537, 789
MslI CAYNNNNRTG 1 cut(s) 1040
MspA1I CMGCKG 1 cut(s) 591
MspI CCGG 6 cut(s) 267, 411, 506, 564, 771, 783
MspR9I CCNGG 5 cut(s) 244, 268, 467, 743, 968
MunI CAATTG 2 cut(s) 663, 1062
Mva1269I GAATGC 1 cut(s) 640
MvaI CCWGG 4 cut(s) 244, 467, 743, 968
MvnI CGCG 2 cut(s) 74, 542
MwoI GCNNNNNNNGC 6 cut(s) 209, 481, 564, 713, 776, 1058
NaeI GCCGGC 1 cut(s) 772
NciI CCSGG 1 cut(s) 268
NcoI CCATGG 1 cut(s) 622
NdeII GATC 3 cut(s) 237, 709, 1044
NgoMIV GCCGGC 1 cut(s) 770
NlaIII CATG 1 cut(s) 626
NlaIV GGNNCC 5 cut(s) 280, 281, 483, 484, 571
NmeAIII GCCGAG 1 cut(s) 427
NspV TTCGAA 1 cut(s) 599
PaqCI CACCTGC 2 cut(s) 95, 466
PceI AGGCCT 1 cut(s) 993
PcsI WCGNNNNNNNCGW 1 cut(s) 374
PctI GAATGC 1 cut(s) 640
PdiI GCCGGC 1 cut(s) 772
PfeI GAWTC 5 cut(s) 532, 669, 843, 958, 1143
PkrI GCNGC 3 cut(s) 400, 416, 569
PleI GAGTC 4 cut(s) 373, 412, 544, 811
PpsI GAGTC 4 cut(s) 373, 412, 544, 811
PpuMI RGGWCCY 1 cut(s) 279
PsiI TTATAA 1 cut(s) 977
Psp5II RGGWCCY 1 cut(s) 279
Psp6I CCWGG 4 cut(s) 242, 465, 741, 966
PspFI CCCAGC 2 cut(s) 275, 774
PspGI CCWGG 4 cut(s) 242, 465, 741, 966
PspN4I GGNNCC 5 cut(s) 280, 281, 483, 484, 571
PspOMI GGGCCC 1 cut(s) 482
PspPI GGNCC 6 cut(s) 168, 246, 279, 482, 483, 777
PspPPI RGGWCCY 1 cut(s) 279
PstI CTGCAG 1 cut(s) 873
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 1040
SaqAI TTAA 3 cut(s) 327, 537, 789
SatI GCNGC 3 cut(s) 399, 415, 568
Sau3AI GATC 3 cut(s) 237, 709, 1044
Sau96I GGNCC 6 cut(s) 168, 246, 279, 482, 483, 777
SchI GAGTC 4 cut(s) 374, 413, 544, 812
ScrFI CCNGG 5 cut(s) 244, 268, 467, 743, 968
SduI GDGCHC 2 cut(s) 486, 909
SexAI ACCWGGT 1 cut(s) 465
SfaNI GCATC 2 cut(s) 348, 516
SfcI CTRYAG 1 cut(s) 869
SfuI TTCGAA 1 cut(s) 599
SinI GGWCC 2 cut(s) 168, 279
SmiMI CAYNNNNRTG 1 cut(s) 1040
SmlI CTYRAG 1 cut(s) 889
SmoI CTYRAG 1 cut(s) 889
Sse9I AATT 7 cut(s) 371, 627, 663, 786, 1038, 1062, 1083
SseBI AGGCCT 1 cut(s) 993
SsiI CCGC 8 cut(s) 72, 180, 399, 414, 567, 585, 591, 1029
SspI AATATT 1 cut(s) 36
SspMI CTAG 1 cut(s) 995
StuI AGGCCT 1 cut(s) 993
StyD4I CCNGG 5 cut(s) 242, 266, 465, 741, 966
StyI CCWWGG 2 cut(s) 622, 807
TaaI ACNGT 3 cut(s) 654, 833, 944
TaiI ACGT 2 cut(s) 327, 387
TaqI TCGA 3 cut(s) 125, 368, 599
TasI AATT 7 cut(s) 371, 627, 663, 786, 1038, 1062, 1083
TauI GCSGC 3 cut(s) 401, 417, 570
TfiI GAWTC 5 cut(s) 532, 669, 843, 958, 1143
Tru1I TTAA 3 cut(s) 327, 537, 789
Tru9I TTAA 3 cut(s) 327, 537, 789
TscAI CASTG 2 cut(s) 170, 400
TspDTI ATGAA 3 cut(s) 196, 620, 719
TspGWI ACGGA 1 cut(s) 690
TspRI CASTG 2 cut(s) 170, 400
VpaK11BI GGWCC 2 cut(s) 168, 279
XapI RAATTY 1 cut(s) 627
XspI CTAG 1 cut(s) 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.