pycom05g15320

Auxin-induced in root cultures protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
18840977 .. 18842916
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g15320.2

Sequence Viewer

Length: 1041 bp
ATGGCTTCTTCTTCCTCCTCCTCTTCTCTCTCAATATTTCTACCGCTCACCCTCCTTTGTCTTATCTCACCCGCGCTTTCCCTCACCTGCACCTCCCAAACCTTCACCAACAACAAGCTCTACTCGAAATGCGCCGACCTCCCCGTCCTCAGCTCCTTCCTCCACTGGACCTACGACCCCGCCAACTCCACTCTCTCCATCGCCTTCATCTCGCCACCCTCCAAAACCGATGGCTGGATCGCCTGGGCCATCAACCCGACGTCCACCGGGATGCCTGGGTCCCAGACCCTCCTCGCCTACCAGAAGTCCGACGGCTCCATGGCCGTTAAAACCTTCAACATCAGCTCGTACAAGGATATTGTCGAGTCGAAGCTGTCGTTCGACGTGTGGGACACTGCGGCCGAGTCGTCCGGCGGCGTTTTTAGGCTGTTTGCGAAGTTGAAGGTGGAGAACGAGACGGTGAACCAGGTTTGGCAGGTGGGGCCCTCTGTTTCCGATGGGTTTCCGGTTAAACACGACTTCATGACGCCGAATCTTAACTCGAAAGGGACACTGAACTTGACCGGCGGCACCACCACCACCACCGTTAGCGGGGGGTCCAAGATGAAGAAGAGAAATATACATGGAATTTTGAATGCTGTGAGTTGGGGATTGATGTTCCCAATTGGAATCATCATAGCAAGATATTTGAGGGCTTTTCCGTCTGCGGATCCAGCTTGGTTTTATCTTCATATATTCTGCCAGGTATCTGGTTATGCCATTGGTGTCGCCGGCTGGGCTACCGGAATTAAGCTCGGAAGTGAGTCCAAAGGGGTGGTTTACACTAATCATCGCAACATTGGAATTGCCCTGTTTGCCTTAGCAACTCTGCAGATATTCGCATTGTTCTTGAGGCCGAAGAAGGAGCACAAGTTCAGGTTCTACTGGAATATCTACCACCACGCTCTTGGATACACGATCCTTGTCCTCGGCATTATAAATGTGTTTAAGGGCTTAGACATACTAAATCCTGCTAAGCATTGGATCGATCTACTTACATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

347

Amino Acids

37.88

Weight (kDa)

9.38

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 977
AarI CACCTGC 2 cut(s) 95, 466
AasI GACNNNNNNGTC 1 cut(s) 143
AatII GACGTC 1 cut(s) 263
Acc36I ACCTGC 2 cut(s) 95, 466
AccB1I GGYRCC 1 cut(s) 569
AccBSI CCGCTC 1 cut(s) 46
AccII CGCG 1 cut(s) 74
AciI CCGC 8 cut(s) 44, 72, 180, 398, 414, 567, 591, 707
AclWI GGATC 5 cut(s) 245, 704, 717, 952, 1031
AcoI YGGCCR 2 cut(s) 321, 399
AcsI RAATTY 1 cut(s) 627
AcyI GRCGYC 2 cut(s) 260, 527
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 2 cut(s) 234, 591
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 3 cut(s) 337, 442, 634
AjiI CACGTC 1 cut(s) 385
AjnI CCWGG 4 cut(s) 242, 274, 465, 741
AloI GAACNNNNNNTCC 2 cut(s) 896, 928
AluBI AGCT 6 cut(s) 118, 153, 345, 373, 716, 793
AluI AGCT 6 cut(s) 118, 153, 345, 373, 716, 793
Alw21I GWGCWC 1 cut(s) 909
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 5 cut(s) 245, 704, 717, 952, 1031
AoxI GGCC 5 cut(s) 246, 321, 399, 482, 893
ApaI GGGCCC 1 cut(s) 486
ApoI RAATTY 1 cut(s) 627
AspLEI GCGC 2 cut(s) 76, 134
AspS9I GGNCC 6 cut(s) 168, 246, 279, 482, 483, 597
AsuC2I CCSGG 1 cut(s) 268
AsuHPI GGTGA 5 cut(s) 40, 60, 76, 97, 472
AvaII GGWCC 3 cut(s) 168, 279, 597
BaeGI GKGCMC 1 cut(s) 486
BamHI GGATCC 1 cut(s) 709
BanI GGYRCC 1 cut(s) 569
BanII GRGCYC 1 cut(s) 486
Bbv12I GWGCWC 1 cut(s) 909
BbvCI CCTCAGC 1 cut(s) 149
BccI CCATC 4 cut(s) 206, 224, 257, 491
BceAI ACGGC 2 cut(s) 308, 328
BciT130I CCWGG 4 cut(s) 244, 276, 467, 743
BciVI GTATCC 1 cut(s) 944
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 449
BfmI CTRYAG 1 cut(s) 869
BfuAI ACCTGC 2 cut(s) 95, 466
BfuI GTATCC 1 cut(s) 944
BglI GCCNNNNNGGC 1 cut(s) 776
BisI GCNGC 3 cut(s) 399, 415, 568
BlpI GCTNAGC 1 cut(s) 1014
BlsI GCNGC 3 cut(s) 400, 416, 569
Bme1390I CCNGG 5 cut(s) 244, 268, 276, 467, 743
Bme18I GGWCC 3 cut(s) 168, 279, 597
BmgBI CACGTC 1 cut(s) 385
BmgT120I GGNCC 6 cut(s) 168, 246, 279, 482, 483, 597
BmiI GGNNCC 8 cut(s) 280, 281, 316, 483, 484, 571, 598, 711
BmrFI CCNGG 5 cut(s) 244, 268, 276, 467, 743
BmsI GCATC 1 cut(s) 261
Bpu10I CCTNAGC 2 cut(s) 149, 859
Bpu1102I GCTNAGC 1 cut(s) 1014
BpuEI CTTGAG 1 cut(s) 910
BpuMI CCSGG 1 cut(s) 268
Bsa29I ATCGAT 1 cut(s) 1026
BsaHI GRCGYC 2 cut(s) 260, 527
BsaJI CCNNGG 4 cut(s) 243, 275, 318, 967
BsaWI WCCGGW 2 cut(s) 505, 782
BsaXI ACNNNNNCTCC 2 cut(s) 896, 926
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 591
Bse118I RCCGGY 2 cut(s) 563, 770
Bse1I ACTGG 2 cut(s) 170, 929
BseBI CCWGG 4 cut(s) 244, 276, 467, 743
BseCI ATCGAT 1 cut(s) 1026
BseDI CCNNGG 4 cut(s) 243, 275, 318, 967
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 234, 591
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 2 cut(s) 170, 929
BseRI GAGGAG 3 cut(s) 7, 10, 281
BseSI GKGCMC 1 cut(s) 486
BseX3I CGGCCG 1 cut(s) 399
BseYI CCCAGC 1 cut(s) 774
BsgI GTGCAG 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 74
Bsh1285I CGRYCG 1 cut(s) 402
BshFI GGCC 5 cut(s) 248, 323, 401, 484, 895
BshNI GGYRCC 1 cut(s) 569
BshVI ATCGAT 1 cut(s) 1026
BsiEI CGRYCG 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 909
BsiSI CCGG 6 cut(s) 267, 411, 506, 564, 771, 783
BslFI GGGAC 3 cut(s) 265, 404, 562
BslI CCNNNNNNNGG 2 cut(s) 234, 591
BsmAI GTCTC 1 cut(s) 449
BsmBI CGTCTC 1 cut(s) 449
BsmFI GGGAC 3 cut(s) 265, 404, 562
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 5 cut(s) 248, 323, 401, 484, 895
Bsp120I GGGCCC 1 cut(s) 482
Bsp1286I GDGCHC 2 cut(s) 486, 909
Bsp143I GATC 5 cut(s) 237, 709, 957, 1023, 1027
Bsp1720I GCTNAGC 1 cut(s) 1014
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 8 cut(s) 44, 72, 180, 398, 414, 567, 591, 707
BspANI GGCC 5 cut(s) 248, 323, 401, 484, 895
BspCNI CTCAG 1 cut(s) 162
BspDI ATCGAT 1 cut(s) 1026
BspFNI CGCG 1 cut(s) 74
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 8 cut(s) 280, 281, 316, 483, 484, 571, 598, 711
BspMAI CTGCAG 1 cut(s) 873
BspMI ACCTGC 2 cut(s) 95, 466
BspPI GGATC 5 cut(s) 245, 704, 717, 952, 1031
BspT107I GGYRCC 1 cut(s) 569
BsrBI CCGCTC 1 cut(s) 46
BsrFI RCCGGY 2 cut(s) 563, 770
BsrI ACTGG 2 cut(s) 170, 929
BssAI RCCGGY 2 cut(s) 563, 770
BssECI CCNNGG 4 cut(s) 243, 275, 318, 967
BssMI GATC 5 cut(s) 237, 709, 957, 1023, 1027
BssNI GRCGYC 2 cut(s) 260, 527
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 4 cut(s) 244, 276, 467, 743
Bst4CI ACNGT 2 cut(s) 460, 586
Bst6I CTCTTC 2 cut(s) 28, 605
BstACI GRCGYC 2 cut(s) 260, 527
BstC8I GCNNGC 1 cut(s) 772
BstDEI CTNAG 4 cut(s) 149, 859, 994, 1014
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 276
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 2 cut(s) 76, 134
BstKTI GATC 5 cut(s) 240, 712, 960, 1026, 1030
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 5 cut(s) 237, 709, 957, 1023, 1027
BstMCI CGRYCG 1 cut(s) 402
BstMWI GCNNNNNNNGC 4 cut(s) 481, 713, 776, 854
BstNI CCWGG 4 cut(s) 244, 276, 467, 743
BstSCI CCNGG 5 cut(s) 242, 266, 274, 465, 741
BstSFI CTRYAG 1 cut(s) 869
BstSLI GKGCMC 1 cut(s) 486
BstUI CGCG 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 709
BstXI CCANNNNNNTGG 3 cut(s) 749, 814, 947
BstYI RGATCY 1 cut(s) 709
BstZI CGGCCG 1 cut(s) 399
Bsu15I ATCGAT 1 cut(s) 1026
BsuI GTATCC 1 cut(s) 944
BsuRI GGCC 5 cut(s) 248, 323, 401, 484, 895
BsuTUI ATCGAT 1 cut(s) 1026
BtgI CCRYGG 1 cut(s) 318
BtgZI GCGATG 2 cut(s) 184, 815
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 1 cut(s) 276
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 3 cut(s) 163, 393, 551
BveI ACCTGC 2 cut(s) 95, 466
Cac8I GCNNGC 1 cut(s) 772
CciI TCATGA 1 cut(s) 522
CfoI GCGC 2 cut(s) 76, 134
Cfr10I RCCGGY 2 cut(s) 563, 770
Cfr13I GGNCC 6 cut(s) 168, 246, 279, 482, 483, 597
ClaI ATCGAT 1 cut(s) 1026
CseI GACGC 1 cut(s) 535
CsiI ACCWGGT 1 cut(s) 465
Csp6I GTAC 1 cut(s) 349
CviAII CATG 3 cut(s) 319, 523, 623
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 4 cut(s) 149, 859, 994, 1014
DpnI GATC 5 cut(s) 239, 711, 959, 1025, 1029
DpnII GATC 5 cut(s) 237, 709, 957, 1023, 1027
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
EaeI YGGCCR 2 cut(s) 321, 399
EagI CGGCCG 1 cut(s) 399
Eam1104I CTCTTC 2 cut(s) 28, 605
EarI CTCTTC 2 cut(s) 28, 605
EclXI CGGCCG 1 cut(s) 399
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 486
Eco47I GGWCC 3 cut(s) 168, 279, 597
Eco52I CGGCCG 1 cut(s) 399
EcoO109I RGGNCCY 3 cut(s) 279, 482, 483
EcoRII CCWGG 4 cut(s) 242, 274, 465, 741
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 486
ErhI CCWWGG 1 cut(s) 318
Esp3I CGTCTC 1 cut(s) 449
FaeI CATG 3 cut(s) 322, 526, 626
FaqI GGGAC 3 cut(s) 265, 404, 562
FatI CATG 3 cut(s) 318, 522, 622
FauI CCCGC 3 cut(s) 79, 187, 584
Fnu4HI GCNGC 3 cut(s) 399, 415, 568
FokI GGATG 1 cut(s) 283
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 3 cut(s) 399, 415, 568
GlaI GCGC 2 cut(s) 75, 133
GluI GCNGC 3 cut(s) 399, 415, 568
GsaI CCCAGC 1 cut(s) 778
HaeIII GGCC 5 cut(s) 248, 323, 401, 484, 895
HapII CCGG 6 cut(s) 267, 411, 506, 564, 771, 783
HgaI GACGC 1 cut(s) 535
HhaI GCGC 2 cut(s) 76, 134
Hin1I GRCGYC 2 cut(s) 260, 527
Hin1II CATG 3 cut(s) 322, 526, 626
Hin6I GCGC 2 cut(s) 74, 132
HinP1I GCGC 2 cut(s) 74, 132
HinfI GANTC 5 cut(s) 365, 404, 532, 669, 803
HpaII CCGG 6 cut(s) 267, 411, 506, 564, 771, 783
HphI GGTGA 5 cut(s) 40, 60, 76, 97, 472
Hpy166II GTNNAC 3 cut(s) 264, 463, 820
Hpy188I TCNGA 3 cut(s) 310, 496, 797
Hpy188III TCNNGA 2 cut(s) 523, 889
Hpy8I GTNNAC 3 cut(s) 264, 463, 820
Hpy99I CGWCG 3 cut(s) 262, 314, 386
HpyAV CCTTC 6 cut(s) 112, 166, 214, 343, 436, 895
HpyCH4III ACNGT 2 cut(s) 460, 586
HpyCH4IV ACGT 2 cut(s) 260, 384
HpyCH4V TGCA 2 cut(s) 90, 871
HpyF10VI GCNNNNNNNGC 4 cut(s) 481, 713, 776, 854
HpyF3I CTNAG 4 cut(s) 149, 859, 994, 1014
HpySE526I ACGT 2 cut(s) 260, 384
Hsp92I GRCGYC 2 cut(s) 260, 527
Hsp92II CATG 3 cut(s) 322, 526, 626
HspAI GCGC 2 cut(s) 74, 132
KflI GGGWCCC 1 cut(s) 279
KroI GCCGGC 1 cut(s) 770
KroNI GCCGGC 1 cut(s) 772
Kzo9I GATC 5 cut(s) 237, 709, 957, 1023, 1027
LmnI GCTCC 3 cut(s) 158, 320, 904
LweI GCATC 1 cut(s) 261
MabI ACCWGGT 1 cut(s) 465
MaeII ACGT 2 cut(s) 260, 384
MalI GATC 5 cut(s) 239, 711, 959, 1025, 1029
MbiI CCGCTC 1 cut(s) 46
MboI GATC 5 cut(s) 237, 709, 957, 1023, 1027
MboII GAAGA 6 cut(s) 3, 15, 619, 622, 719, 910
MfeI CAATTG 1 cut(s) 663
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 2 cut(s) 486, 909
MluCI AATT 4 cut(s) 627, 663, 786, 843
MlyI GAGTC 3 cut(s) 374, 413, 812
MmeI TCCRAC 1 cut(s) 333
MroNI GCCGGC 1 cut(s) 770
MseI TTAA 5 cut(s) 327, 510, 537, 789, 987
MslI CAYNNNNRTG 1 cut(s) 269
MspI CCGG 6 cut(s) 267, 411, 506, 564, 771, 783
MspR9I CCNGG 5 cut(s) 244, 268, 276, 467, 743
MunI CAATTG 1 cut(s) 663
Mva1269I GAATGC 1 cut(s) 640
MvaI CCWGG 4 cut(s) 244, 276, 467, 743
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 4 cut(s) 481, 713, 776, 854
NaeI GCCGGC 1 cut(s) 772
NciI CCSGG 1 cut(s) 268
NcoI CCATGG 1 cut(s) 318
NdeII GATC 5 cut(s) 237, 709, 957, 1023, 1027
NgoMIV GCCGGC 1 cut(s) 770
NlaIII CATG 3 cut(s) 322, 526, 626
NlaIV GGNNCC 8 cut(s) 280, 281, 316, 483, 484, 571, 598, 711
NmeAIII GCCGAG 2 cut(s) 427, 948
PagI TCATGA 1 cut(s) 522
PaqCI CACCTGC 2 cut(s) 95, 466
PcsI WCGNNNNNNNCGW 1 cut(s) 374
PctI GAATGC 1 cut(s) 640
PdiI GCCGGC 1 cut(s) 772
PfeI GAWTC 2 cut(s) 532, 669
PkrI GCNGC 3 cut(s) 400, 416, 569
PleI GAGTC 3 cut(s) 373, 412, 811
PpsI GAGTC 3 cut(s) 373, 412, 811
PpuMI RGGWCCY 1 cut(s) 279
PsiI TTATAA 1 cut(s) 977
Psp5II RGGWCCY 1 cut(s) 279
Psp6I CCWGG 4 cut(s) 242, 274, 465, 741
PspFI CCCAGC 1 cut(s) 774
PspGI CCWGG 4 cut(s) 242, 274, 465, 741
PspN4I GGNNCC 8 cut(s) 280, 281, 316, 483, 484, 571, 598, 711
PspOMI GGGCCC 1 cut(s) 482
PspPI GGNCC 6 cut(s) 168, 246, 279, 482, 483, 597
PspPPI RGGWCCY 1 cut(s) 279
PstI CTGCAG 1 cut(s) 873
PsuI RGATCY 1 cut(s) 709
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 5 cut(s) 327, 510, 537, 789, 987
SatI GCNGC 3 cut(s) 399, 415, 568
Sau3AI GATC 5 cut(s) 237, 709, 957, 1023, 1027
Sau96I GGNCC 6 cut(s) 168, 246, 279, 482, 483, 597
SchI GAGTC 3 cut(s) 374, 413, 812
ScrFI CCNGG 5 cut(s) 244, 268, 276, 467, 743
SduI GDGCHC 2 cut(s) 486, 909
SexAI ACCWGGT 1 cut(s) 465
SfaNI GCATC 1 cut(s) 261
SfcI CTRYAG 1 cut(s) 869
SinI GGWCC 3 cut(s) 168, 279, 597
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 889
SmoI CTYRAG 1 cut(s) 889
Sse9I AATT 4 cut(s) 627, 663, 786, 843
SsiI CCGC 8 cut(s) 44, 72, 180, 398, 414, 567, 591, 707
SspI AATATT 1 cut(s) 36
StyD4I CCNGG 5 cut(s) 242, 266, 274, 465, 741
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 2 cut(s) 460, 586
TaiI ACGT 2 cut(s) 263, 387
TaqI TCGA 6 cut(s) 125, 363, 368, 381, 542, 1026
TasI AATT 4 cut(s) 627, 663, 786, 843
TauI GCSGC 3 cut(s) 401, 417, 570
TfiI GAWTC 2 cut(s) 532, 669
Tru1I TTAA 5 cut(s) 327, 510, 537, 789, 987
Tru9I TTAA 5 cut(s) 327, 510, 537, 789, 987
TscAI CASTG 3 cut(s) 170, 400, 558
TspDTI ATGAA 4 cut(s) 196, 511, 620, 719
TspGWI ACGGA 1 cut(s) 690
TspRI CASTG 3 cut(s) 170, 400, 558
VpaK11BI GGWCC 3 cut(s) 168, 279, 597
XapI RAATTY 1 cut(s) 627
XcmI CCANNNNNNNNNTGG 1 cut(s) 944
ZraI GACGTC 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.