Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013038.1

Orthogroup ID

OG0007761

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 962

Gene Structure 962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013038.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ggtgtcaccggggccggagccgatcccaagttgaaggacaggaatattcatggaattctgaatgctgtgagttgggggtttttgtttccactggggatcattatagcaaggtacatcaggacttttccgtctgcggatcctgcatggttttatctccatatatcctgccaaatatctgcttatgccatcggtgtcgccggctgggccaccggactgaagcttggaaggggtgaatacaccacccaccgcaacatcggaattaccctcttcaccattgcaactgtgcagatgcttgcattgttcttgagacctggtaaggatcacaagtacaggctttactggaacatctaccaccacagcgttggatatgcgattctggtgcttggcattgtgaatattttcaaaggcttagacattctaaatcctactaaccattggaaaactgcttacataattgccatctgtgtgttgggtgggatcgccgtagtcttggaaatattgacttggattgttgtactaaacagaaggtcaagtaagtccacaaagccatacgatggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561 DUF568

Protein Analysis

186

Amino Acids

20.64

Weight (kDa)

9.79

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25290 AT3G25290 AT4G12980
fragaria_vesca	FvH4_2g18000
malus_domestica	MD05G1164000.v1.1 MD10G1153700.v1.1
prunus_persica	Prupe.8G192500_v2.0.a1 Prupe.8G192500_v2.0.a1
pyrus_communis	pycom05g15320 pycom10g13270
rosa_chinensis	RchiOBHm_Chr6g0283371
rosa_laevigata	RLG00000012832
rosa_multiflora	Rmu_sc0003166.1_g000008 Rmu_sc0013038.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185580
rosa_rugosa	Rorug06G0153100 Rorug06G0153200 Rorug06G0153300 Rorug06G0153400
rosa_samantha	Rh6AG265900 Rh6BG268500 Rh6CG268200 Rh6DG261700
rosa_wichuraiana	Rw6G023010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	127
AccB7I	CCANNNNNTGG	1 cut(s)	554
AciI	CCGC	2 cut(s)	134, 247
AclWI	GGATC	6 cut(s)	17, 104, 131, 144, 327, 485
AcsI	RAATTY	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	3 cut(s)	113, 329, 516
AfiI	CCNNNNNNNGG	1 cut(s)	554
AgsI	TTSAA	2 cut(s)	34, 403
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	6 cut(s)	17, 104, 131, 144, 327, 485
AoxI	GGCC	2 cut(s)	12, 204
ApoI	RAATTY	1 cut(s)	54
Asp700I	GAANNNNTTC	1 cut(s)	398
AspS9I	GGNCC	2 cut(s)	12, 204
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	2 cut(s)	242, 262
BamHI	GGATCC	1 cut(s)	136
BccI	CCATC	3 cut(s)	194, 467, 548
BceAI	ACGGC	1 cut(s)	467
BcgI	CGANNNNNNTGC	2 cut(s)	361, 395
BciT130I	CCWGG	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	301
BglI	GCCNNNNNGGC	1 cut(s)	203
Bme1390I	CCNGG	2 cut(s)	10, 312
BmgT120I	GGNCC	2 cut(s)	12, 204
BmiI	GGNNCC	3 cut(s)	13, 19, 138
BmrFI	CCNGG	2 cut(s)	10, 312
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	279
BmuI	ACTGGG	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	325
BpuMI	CCSGG	1 cut(s)	10
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	2 cut(s)	96, 344
Bse3DI	GCAATG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMI	GCAATG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	96, 344
BseYI	CCCAGC	1 cut(s)	201
BsgI	GTGCAG	1 cut(s)	305
BshFI	GGCC	2 cut(s)	14, 206
BsiSI	CCGG	4 cut(s)	9, 15, 198, 210
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmAI	GTCTC	1 cut(s)	301
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	14, 206
Bso31I	GGTCTC	1 cut(s)	301
Bsp143I	GATC	5 cut(s)	22, 96, 136, 319, 477
BspACI	CCGC	2 cut(s)	134, 247
BspANI	GGCC	2 cut(s)	14, 206
BspLI	GGNNCC	3 cut(s)	13, 19, 138
BspPI	GGATC	6 cut(s)	17, 104, 131, 144, 327, 485
BspTNI	GGTCTC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	96, 344
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	5 cut(s)	22, 96, 136, 319, 477
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	199, 294
BstDEI	CTNAG	1 cut(s)	409
BstKTI	GATC	5 cut(s)	25, 99, 139, 322, 480
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	5 cut(s)	22, 96, 136, 319, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 203
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	8, 310
BstX2I	RGATCY	1 cut(s)	136
BstXI	CCANNNNNNTGG	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	14, 206
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	199, 294
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	12, 204
CsiI	ACCWGGT	1 cut(s)	310
Csp6I	GTAC	3 cut(s)	112, 328, 515
CviAII	CATG	2 cut(s)	50, 144
CviJI	RGCY	8 cut(s)	14, 20, 201, 206, 220, 334, 408, 547
CviKI_1	RGCY	8 cut(s)	14, 20, 201, 206, 220, 334, 408, 547
CviQI	GTAC	3 cut(s)	112, 328, 515
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	5 cut(s)	24, 98, 138, 321, 479
DpnII	GATC	5 cut(s)	22, 96, 136, 319, 477
DrdI	GACNNNNNNGTC	1 cut(s)	127
DseDI	GACNNNNNNGTC	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco31I	GGTCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	236
EcoRI	GAATTC	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	310
FaeI	CATG	2 cut(s)	53, 147
FaiI	YATR	9 cut(s)	51, 104, 145, 159, 161, 183, 369, 452, 550
FatI	CATG	2 cut(s)	49, 143
GsaI	CCCAGC	1 cut(s)	205
HaeIII	GGCC	2 cut(s)	14, 206
HapII	CCGG	4 cut(s)	9, 15, 198, 210
Hin1II	CATG	2 cut(s)	53, 147
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	1 cut(s)	373
HpaII	CCGG	4 cut(s)	9, 15, 198, 210
HphI	GGTGA	2 cut(s)	242, 262
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	2 cut(s)	60, 257
Hpy188III	TCNNGA	2 cut(s)	118, 304
Hpy8I	GTNNAC	1 cut(s)	540
HpyAV	CCTTC	3 cut(s)	28, 219, 519
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	4 cut(s)	143, 278, 286, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 203
HpyF3I	CTNAG	1 cut(s)	409
Hsp92II	CATG	2 cut(s)	53, 147
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	22, 96, 136, 319, 477
LmnI	GCTCC	1 cut(s)	17
LweI	GCATC	1 cut(s)	279
MabI	ACCWGGT	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	5 cut(s)	24, 98, 138, 321, 479
MboI	GATC	5 cut(s)	22, 96, 136, 319, 477
MboII	GAAGA	1 cut(s)	259
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	3 cut(s)	54, 258, 453
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	1 cut(s)	275
MroNI	GCCGGC	1 cut(s)	197
MroXI	GAANNNNTTC	1 cut(s)	398
MslI	CAYNNNNRTG	1 cut(s)	464
MspI	CCGG	4 cut(s)	9, 15, 198, 210
MspR9I	CCNGG	2 cut(s)	10, 312
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	140, 203
NaeI	GCCGGC	1 cut(s)	199
NciI	CCSGG	1 cut(s)	10
NdeII	GATC	5 cut(s)	22, 96, 136, 319, 477
NgoMIV	GCCGGC	1 cut(s)	197
NlaIII	CATG	2 cut(s)	53, 147
NlaIV	GGNNCC	3 cut(s)	13, 19, 138
NmuCI	GTSAC	1 cut(s)	4
PctI	GAATGC	1 cut(s)	67
PdiI	GCCGGC	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	373
PflMI	CCANNNNNTGG	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	3 cut(s)	13, 19, 138
PspPI	GGNCC	2 cut(s)	12, 204
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	3 cut(s)	113, 329, 516
RsaNI	GTAC	3 cut(s)	112, 328, 515
RseI	CAYNNNNRTG	1 cut(s)	464
Sau3AI	GATC	5 cut(s)	22, 96, 136, 319, 477
Sau96I	GGNCC	2 cut(s)	12, 204
ScrFI	CCNGG	2 cut(s)	10, 312
SetI	ASST	4 cut(s)	113, 222, 313, 530
SexAI	ACCWGGT	1 cut(s)	310
SfaNI	GCATC	1 cut(s)	279
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	3 cut(s)	54, 258, 453
SsiI	CCGC	2 cut(s)	134, 247
SspI	AATATT	3 cut(s)	46, 397, 498
StyD4I	CCNGG	2 cut(s)	8, 310
TaaI	ACNGT	1 cut(s)	283
TasI	AATT	3 cut(s)	54, 258, 453
TatI	WGTACW	2 cut(s)	327, 514
TfiI	GAWTC	1 cut(s)	373
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	96
Van91I	CCANNNNNTGG	1 cut(s)	554
XapI	RAATTY	1 cut(s)	54
XcmI	CCANNNNNNNNNTGG	2 cut(s)	359, 466
XmnI	GAANNNNTTC	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.