RchiOBHm_Chr6g0283371

Auxin-induced in root cultures protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
46573958 .. 46575920
1963 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25407

Sequence Viewer

Length: 1137 bp
ATGGCTTCTTCTTGTGCTAACCAGAACTTGGCGATGCTAATCTCACTGACTGTGATTCTGCTAATCTCACCCGCGTATTCCCAGAGCTGCTCCTCCCAGTCCTTCGCCAACAAAATGCTCTACACCCAATGCGCCGACCTCCCAACCCTCAGCTCTACCCTCCACTGGTACTACGACTCCGCCAACTCCACTCTCGCCATCGCCTTCATCGCGCCGCCGGCCAAGCCCGCCGGATGGACCTCCTGGGCCATCAACCCCACCGGCACCGGCATGGCCGGGGCCCAAACGCTCCTCGCCTACAAAACCTCCTCCGGCGCCATGGCCGTCAAGACCTTCAACATCAGCTCCTACAGCTCCATCGTACCCGGAAAGCTCGCCTTCGACGTCTGGGACACGGCCGCTGAGTCCTCCGGCGGGGTCTTCCGGTTGTTTGCCAAGGTGAAGGTGAAGACTGGGCAGGTGAACCACGTCTGGCAGGTGGGGCCGTCCGTCGTAGATGGGTTTCCGGCGAAGCATGCTTTTGATGCACCCAATCTTCAGGCTAAAGGGACTCTCACCTTGACCGGAACTAATGCCGGTGTCGCCGGGGCCGGAGCCGATCCCAAGTTGAAGGACAGGAATATTCATGGAATTCTGAATGCTGTGAGTTGGGGGTTTTTGTTTCCACTGGGGATCATTATAGCAAGGTACATCAGGACTTTTCCGTCTGCGGATCCTGCATGGTTTTATCTCCATATATCCTGCCAAATATCTGCTTATGCCATCGGTGTCGCCGGCTGGGCCACCGGACTGAAGCTTGGAAGGGGTGAATACACCACCCACCGCAACATCGGAATTACCCTCTTCACCTTTGCAACTGTGCAGATGCTTGCATTGTTCTTGAGACCTGGTAAGGATCACAAGTACAGGCTCTACTGGAACATCTACCACCACAGCGTTGGATATGCGATTCTAGTGCTTGGCATTGTGAATATTTTCAAAGGCTTAGACATTCTAAATCCTACTAACCATTGGAAAACCGCTTACATAATTGCCATCTGTGTGTTGGGTGGGATCGCCGTAGTCTTGGAAATATTGACTTGGATTGTTGTACTAAACAGAAGGTCAAGTAAGTCCACCAAGCCATACGATGGATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

378

Amino Acids

40.79

Weight (kDa)

9.54

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 91 - 187 3.9e-27 Protein of unknown function (DUF568)
Cytochrom_B561 PF03188 209 - 329 5e-07 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 448, 466
AasI GACNNNNNNGTC 1 cut(s) 703
AatII GACGTC 1 cut(s) 387
Acc36I ACCTGC 2 cut(s) 448, 466
AccB1I GGYRCC 2 cut(s) 263, 314
AccB7I CCANNNNNTGG 2 cut(s) 28, 1130
AccII CGCG 2 cut(s) 74, 212
AciI CCGC 9 cut(s) 72, 180, 215, 228, 399, 414, 710, 823, 1020
AclWI GGATC 6 cut(s) 593, 680, 707, 720, 903, 1061
AcoI YGGCCR 4 cut(s) 219, 273, 321, 396
AcsI RAATTY 1 cut(s) 630
AcuI CTGAAG 2 cut(s) 521, 812
AcyI GRCGYC 2 cut(s) 315, 384
AfaI GTAC 5 cut(s) 170, 363, 689, 905, 1092
AfiI CCNNNNNNNGG 5 cut(s) 28, 165, 234, 414, 1130
AgsI TTSAA 3 cut(s) 337, 610, 979
AjiI CACGTC 1 cut(s) 469
AjnI CCWGG 2 cut(s) 242, 886
AluBI AGCT 6 cut(s) 87, 153, 345, 354, 373, 796
AluI AGCT 6 cut(s) 87, 153, 345, 354, 373, 796
Alw26I GTCTC 1 cut(s) 877
AlwI GGATC 6 cut(s) 593, 680, 707, 720, 903, 1061
AoxI GGCC 9 cut(s) 219, 246, 273, 279, 321, 396, 482, 588, 780
ApaI GGGCCC 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 630
Asp700I GAANNNNTTC 1 cut(s) 974
AspLEI GCGC 3 cut(s) 134, 214, 317
AspS9I GGNCC 7 cut(s) 237, 246, 279, 280, 482, 588, 780
AsuC2I CCSGG 3 cut(s) 277, 366, 586
AsuHPI GGTGA 7 cut(s) 60, 451, 457, 472, 547, 818, 838
AvaII GGWCC 1 cut(s) 237
BaeGI GKGCMC 1 cut(s) 283
BamHI GGATCC 1 cut(s) 712
BanI GGYRCC 2 cut(s) 263, 314
BanII GRGCYC 1 cut(s) 283
BbsI GAAGAC 2 cut(s) 412, 455
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 74
BccI CCATC 8 cut(s) 206, 228, 257, 365, 491, 770, 1043, 1124
BceAI ACGGC 4 cut(s) 308, 411, 469, 1043
BcgI CGANNNNNNTGC 2 cut(s) 937, 971
BciT130I CCWGG 2 cut(s) 244, 888
BcnI CCSGG 3 cut(s) 277, 366, 586
BcoDI GTCTC 1 cut(s) 877
BfaI CTAG 1 cut(s) 953
BfmI CTRYAG 1 cut(s) 349
BfoI RGCGCY 1 cut(s) 318
BfuAI ACCTGC 2 cut(s) 448, 466
BglI GCCNNNNNGGC 1 cut(s) 779
BisI GCNGC 3 cut(s) 88, 215, 399
BlsI GCNGC 3 cut(s) 89, 216, 400
Bme1390I CCNGG 5 cut(s) 244, 277, 366, 586, 888
Bme18I GGWCC 1 cut(s) 237
BmgBI CACGTC 1 cut(s) 469
BmgT120I GGNCC 7 cut(s) 237, 246, 279, 280, 482, 588, 780
BmiI GGNNCC 8 cut(s) 265, 280, 281, 316, 483, 589, 595, 714
BmrFI CCNGG 5 cut(s) 244, 277, 366, 586, 888
BmrI ACTGGG 3 cut(s) 91, 462, 677
BmsI GCATC 3 cut(s) 24, 514, 855
BmuI ACTGGG 3 cut(s) 91, 462, 677
BpiI GAAGAC 2 cut(s) 412, 455
Bpu10I CCTNAGC 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 901
BpuMI CCSGG 3 cut(s) 277, 366, 586
BsaBI GATNNNNATC 1 cut(s) 38
BsaHI GRCGYC 2 cut(s) 315, 384
BsaI GGTCTC 1 cut(s) 877
BsaJI CCNNGG 5 cut(s) 243, 276, 318, 435, 585
BsaWI WCCGGW 3 cut(s) 423, 563, 785
BsaXI ACNNNNNCTCC 6 cut(s) 161, 191, 290, 320, 329, 359
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 165, 234, 414, 1130
Bse118I RCCGGY 5 cut(s) 217, 260, 266, 575, 773
Bse1I ACTGG 5 cut(s) 97, 170, 457, 672, 920
Bse8I GATNNNNATC 1 cut(s) 38
BseBI CCWGG 2 cut(s) 244, 888
BseDI CCNNGG 5 cut(s) 243, 276, 318, 435, 585
BseGI GGATG 1 cut(s) 239
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 5 cut(s) 28, 165, 234, 414, 1130
BseMII CTCAG 2 cut(s) 163, 393
BseNI ACTGG 5 cut(s) 97, 170, 457, 672, 920
BseRI GAGGAG 3 cut(s) 82, 281, 298
BseSI GKGCMC 1 cut(s) 283
BseX3I CGGCCG 1 cut(s) 396
BseXI GCAGC 1 cut(s) 74
BseYI CCCAGC 1 cut(s) 777
BsgI GTGCAG 1 cut(s) 881
Bsh1236I CGCG 2 cut(s) 74, 212
Bsh1285I CGRYCG 1 cut(s) 399
BshFI GGCC 9 cut(s) 221, 248, 275, 281, 323, 398, 484, 590, 782
BshNI GGYRCC 2 cut(s) 263, 314
BsiEI CGRYCG 1 cut(s) 399
BslFI GGGAC 2 cut(s) 404, 562
BslI CCNNNNNNNGG 5 cut(s) 28, 165, 234, 414, 1130
BsmAI GTCTC 1 cut(s) 877
BsmFI GGGAC 2 cut(s) 404, 562
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 9 cut(s) 221, 248, 275, 281, 323, 398, 484, 590, 782
Bso31I GGTCTC 1 cut(s) 877
Bsp120I GGGCCC 1 cut(s) 279
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 5 cut(s) 598, 672, 712, 895, 1053
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 9 cut(s) 72, 180, 215, 228, 399, 414, 710, 823, 1020
BspANI GGCC 9 cut(s) 221, 248, 275, 281, 323, 398, 484, 590, 782
BspCNI CTCAG 2 cut(s) 162, 394
BspFNI CGCG 2 cut(s) 74, 212
BspLI GGNNCC 8 cut(s) 265, 280, 281, 316, 483, 589, 595, 714
BspMI ACCTGC 2 cut(s) 448, 466
BspPI GGATC 6 cut(s) 593, 680, 707, 720, 903, 1061
BspT107I GGYRCC 2 cut(s) 263, 314
BspTNI GGTCTC 1 cut(s) 877
BsrFI RCCGGY 5 cut(s) 217, 260, 266, 575, 773
BsrI ACTGG 5 cut(s) 97, 170, 457, 672, 920
BssAI RCCGGY 5 cut(s) 217, 260, 266, 575, 773
BssECI CCNNGG 5 cut(s) 243, 276, 318, 435, 585
BssMI GATC 5 cut(s) 598, 672, 712, 895, 1053
BssNI GRCGYC 2 cut(s) 315, 384
BssT1I CCWWGG 2 cut(s) 318, 435
Bst2UI CCWGG 2 cut(s) 244, 888
Bst4CI ACNGT 2 cut(s) 52, 859
Bst6I CTCTTC 1 cut(s) 848
BstACI GRCGYC 2 cut(s) 315, 384
BstC8I GCNNGC 6 cut(s) 219, 228, 375, 516, 775, 870
BstDEI CTNAG 3 cut(s) 149, 402, 985
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 239
BstFNI CGCG 2 cut(s) 74, 212
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 3 cut(s) 134, 214, 317
BstKTI GATC 5 cut(s) 601, 675, 715, 898, 1056
BstMAI GTCTC 1 cut(s) 877
BstMBI GATC 5 cut(s) 598, 672, 712, 895, 1053
BstMCI CGRYCG 1 cut(s) 399
BstNI CCWGG 2 cut(s) 244, 888
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 5 cut(s) 242, 275, 364, 584, 886
BstSFI CTRYAG 1 cut(s) 349
BstSLI GKGCMC 1 cut(s) 283
BstUI CGCG 2 cut(s) 74, 212
BstV1I GCAGC 1 cut(s) 74
BstV2I GAAGAC 2 cut(s) 412, 455
BstX2I RGATCY 1 cut(s) 712
BstXI CCANNNNNNTGG 1 cut(s) 938
BstYI RGATCY 1 cut(s) 712
BstZI CGGCCG 1 cut(s) 396
BsuRI GGCC 9 cut(s) 221, 248, 275, 281, 323, 398, 484, 590, 782
BtgI CCRYGG 1 cut(s) 318
BtgZI GCGATG 3 cut(s) 47, 184, 193
BtrI CACGTC 1 cut(s) 469
BtsCI GGATG 1 cut(s) 239
BtsIMutI CAGTG 3 cut(s) 44, 163, 665
BveI ACCTGC 2 cut(s) 448, 466
Cac8I GCNNGC 6 cut(s) 219, 228, 375, 516, 775, 870
CfoI GCGC 3 cut(s) 134, 214, 317
Cfr10I RCCGGY 5 cut(s) 217, 260, 266, 575, 773
Cfr13I GGNCC 7 cut(s) 237, 246, 279, 280, 482, 588, 780
CsiI ACCWGGT 1 cut(s) 886
Csp6I GTAC 5 cut(s) 169, 362, 688, 904, 1091
CviAII CATG 5 cut(s) 271, 319, 515, 626, 720
CviQI GTAC 5 cut(s) 169, 362, 688, 904, 1091
DdeI CTNAG 3 cut(s) 149, 402, 985
DinI GGCGCC 1 cut(s) 316
DpnI GATC 5 cut(s) 600, 674, 714, 897, 1055
DpnII GATC 5 cut(s) 598, 672, 712, 895, 1053
DrdI GACNNNNNNGTC 1 cut(s) 703
DseDI GACNNNNNNGTC 1 cut(s) 703
EaeI YGGCCR 4 cut(s) 219, 273, 321, 396
EagI CGGCCG 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 848
EarI CTCTTC 1 cut(s) 848
EciI GGCGGA 1 cut(s) 169
EclXI CGGCCG 1 cut(s) 396
Eco130I CCWWGG 2 cut(s) 318, 435
Eco24I GRGCYC 1 cut(s) 283
Eco31I GGTCTC 1 cut(s) 877
Eco47I GGWCC 1 cut(s) 237
Eco52I CGGCCG 1 cut(s) 396
Eco57I CTGAAG 2 cut(s) 521, 812
EcoO109I RGGNCCY 1 cut(s) 279
EcoRI GAATTC 1 cut(s) 630
EcoRII CCWGG 2 cut(s) 242, 886
EcoT14I CCWWGG 2 cut(s) 318, 435
EcoT38I GRGCYC 1 cut(s) 283
EgeI GGCGCC 1 cut(s) 316
EheI GGCGCC 1 cut(s) 316
ErhI CCWWGG 2 cut(s) 318, 435
FaeI CATG 5 cut(s) 274, 322, 518, 629, 723
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 2 cut(s) 404, 562
FatI CATG 5 cut(s) 270, 318, 514, 625, 719
FauI CCCGC 3 cut(s) 79, 235, 407
Fnu4HI GCNGC 3 cut(s) 88, 215, 399
FokI GGATG 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 3 cut(s) 88, 215, 399
FspBI CTAG 1 cut(s) 953
GlaI GCGC 3 cut(s) 133, 213, 316
GluI GCNGC 3 cut(s) 88, 215, 399
GsaI CCCAGC 1 cut(s) 781
HaeII RGCGCY 1 cut(s) 318
HaeIII GGCC 9 cut(s) 221, 248, 275, 281, 323, 398, 484, 590, 782
HhaI GCGC 3 cut(s) 134, 214, 317
Hin1I GRCGYC 2 cut(s) 315, 384
Hin1II CATG 5 cut(s) 274, 322, 518, 629, 723
Hin6I GCGC 3 cut(s) 132, 212, 315
HinP1I GCGC 3 cut(s) 132, 212, 315
HindIII AAGCTT 1 cut(s) 794
HinfI GANTC 5 cut(s) 55, 176, 404, 550, 949
HphI GGTGA 7 cut(s) 60, 451, 457, 472, 547, 818, 838
Hpy166II GTNNAC 2 cut(s) 463, 1116
Hpy188I TCNGA 2 cut(s) 636, 833
Hpy188III TCNNGA 3 cut(s) 328, 694, 880
Hpy8I GTNNAC 2 cut(s) 463, 1116
Hpy99I CGWCG 2 cut(s) 386, 494
HpyAV CCTTC 8 cut(s) 112, 214, 343, 388, 436, 604, 795, 1095
HpyCH4III ACNGT 2 cut(s) 52, 859
HpyCH4IV ACGT 2 cut(s) 384, 468
HpyCH4V TGCA 5 cut(s) 527, 719, 854, 862, 872
HpyF3I CTNAG 3 cut(s) 149, 402, 985
HpySE526I ACGT 2 cut(s) 384, 468
Hsp92I GRCGYC 2 cut(s) 315, 384
Hsp92II CATG 5 cut(s) 274, 322, 518, 629, 723
HspAI GCGC 3 cut(s) 132, 212, 315
KasI GGCGCC 1 cut(s) 314
KroI GCCGGC 2 cut(s) 217, 773
KroNI GCCGGC 2 cut(s) 219, 775
Kzo9I GATC 5 cut(s) 598, 672, 712, 895, 1053
LmnI GCTCC 5 cut(s) 95, 294, 350, 359, 593
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 3 cut(s) 24, 514, 855
MabI ACCWGGT 1 cut(s) 886
MaeI CTAG 1 cut(s) 953
MaeII ACGT 2 cut(s) 384, 468
MalI GATC 5 cut(s) 600, 674, 714, 897, 1055
MboI GATC 5 cut(s) 598, 672, 712, 895, 1053
MboII GAAGA 4 cut(s) 412, 460, 527, 835
MflI RGATCY 1 cut(s) 712
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 3 cut(s) 630, 834, 1029
Mly113I GGCGCC 1 cut(s) 315
MlyI GAGTC 3 cut(s) 170, 413, 544
MmeI TCCRAC 1 cut(s) 919
MroNI GCCGGC 2 cut(s) 217, 773
MroXI GAANNNNTTC 1 cut(s) 974
MslI CAYNNNNRTG 2 cut(s) 269, 1040
MspA1I CMGCKG 1 cut(s) 401
MspR9I CCNGG 5 cut(s) 244, 277, 366, 586, 888
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 2 cut(s) 244, 888
MvnI CGCG 2 cut(s) 74, 212
NaeI GCCGGC 2 cut(s) 219, 775
NarI GGCGCC 1 cut(s) 315
NciI CCSGG 3 cut(s) 277, 366, 586
NcoI CCATGG 1 cut(s) 318
NdeII GATC 5 cut(s) 598, 672, 712, 895, 1053
NgoMIV GCCGGC 2 cut(s) 217, 773
NlaIII CATG 5 cut(s) 274, 322, 518, 629, 723
NlaIV GGNNCC 8 cut(s) 265, 280, 281, 316, 483, 589, 595, 714
NspI RCATGY 1 cut(s) 518
PaeI GCATGC 1 cut(s) 518
PaqCI CACCTGC 2 cut(s) 448, 466
PcsI WCGNNNNNNNCGW 1 cut(s) 381
PctI GAATGC 1 cut(s) 643
PdiI GCCGGC 2 cut(s) 219, 775
PdmI GAANNNNTTC 1 cut(s) 974
PfeI GAWTC 2 cut(s) 55, 949
PflMI CCANNNNNTGG 2 cut(s) 28, 1130
PkrI GCNGC 3 cut(s) 89, 216, 400
PleI GAGTC 3 cut(s) 170, 412, 544
PluTI GGCGCC 1 cut(s) 318
PpsI GAGTC 3 cut(s) 170, 412, 544
Psp6I CCWGG 2 cut(s) 242, 886
PspFI CCCAGC 1 cut(s) 777
PspGI CCWGG 2 cut(s) 242, 886
PspN4I GGNNCC 8 cut(s) 265, 280, 281, 316, 483, 589, 595, 714
PspOMI GGGCCC 1 cut(s) 279
PspPI GGNCC 7 cut(s) 237, 246, 279, 280, 482, 588, 780
PsuI RGATCY 1 cut(s) 712
RsaI GTAC 5 cut(s) 170, 363, 689, 905, 1092
RsaNI GTAC 5 cut(s) 169, 362, 688, 904, 1091
RseI CAYNNNNRTG 2 cut(s) 269, 1040
SatI GCNGC 3 cut(s) 88, 215, 399
Sau3AI GATC 5 cut(s) 598, 672, 712, 895, 1053
Sau96I GGNCC 7 cut(s) 237, 246, 279, 280, 482, 588, 780
SchI GAGTC 3 cut(s) 170, 413, 544
ScrFI CCNGG 5 cut(s) 244, 277, 366, 586, 888
SduI GDGCHC 1 cut(s) 283
SexAI ACCWGGT 1 cut(s) 886
SfaNI GCATC 3 cut(s) 24, 514, 855
SfcI CTRYAG 1 cut(s) 349
SfoI GGCGCC 1 cut(s) 316
SinI GGWCC 1 cut(s) 237
SmiMI CAYNNNNRTG 2 cut(s) 269, 1040
SmlI CTYRAG 1 cut(s) 880
SmoI CTYRAG 1 cut(s) 880
SphI GCATGC 1 cut(s) 518
Sse9I AATT 3 cut(s) 630, 834, 1029
SsiI CCGC 9 cut(s) 72, 180, 215, 228, 399, 414, 710, 823, 1020
SspDI GGCGCC 1 cut(s) 314
SspI AATATT 3 cut(s) 622, 973, 1074
SspMI CTAG 1 cut(s) 953
StyD4I CCNGG 5 cut(s) 242, 275, 364, 584, 886
StyI CCWWGG 2 cut(s) 318, 435
TaaI ACNGT 2 cut(s) 52, 859
TaiI ACGT 2 cut(s) 387, 471
TaqI TCGA 1 cut(s) 381
TasI AATT 3 cut(s) 630, 834, 1029
TatI WGTACW 2 cut(s) 903, 1090
TauI GCSGC 2 cut(s) 217, 401
TfiI GAWTC 2 cut(s) 55, 949
TscAI CASTG 3 cut(s) 51, 170, 672
TseI GCWGC 1 cut(s) 87
TspDTI ATGAA 2 cut(s) 196, 614
TspGWI ACGGA 2 cut(s) 478, 693
TspRI CASTG 3 cut(s) 51, 170, 672
Van91I CCANNNNNTGG 2 cut(s) 28, 1130
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 1 cut(s) 630
XceI RCATGY 1 cut(s) 518
XcmI CCANNNNNNNNNTGG 2 cut(s) 935, 1042
XmnI GAANNNNTTC 1 cut(s) 974
XspI CTAG 1 cut(s) 953
ZraI GACGTC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.