Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007761

Physical Location & Seq

Genomic Coordinates Forward (+)

22031216 .. 22032841

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0153300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCAATTAGTCTGAATAGTGGGTTCGAGATGCCACTAATGGGTCTGGGTCTTTGGCGCATGGAAAAAGATCAGATCAGACCTCTCATCATCACTGCCATAAAACTTGGCTATCGCCATTTTGACTGCGCTGCCCATTACAAGAATGAAGTAGAAGTTGGGAACGCGCTTGCAGAAGCATTTCGGTCTGGACTTGTCAAGAGGGAGCATGTGTTCATTACCTCTAAGGCCAGTCTAGTTGGAAACTTCAGAGTTGGTACTACTGGTAGTGTTTTGGATGAGGATAGGATGCTGGTCATGGACACCACGATATCCCTGGAAAGTACCTGGCATGATATGGAAAAGCTTGTGTCTCTGGGATTAGTTCGAAGCATTGGAATCAGCAACTATGACATCTTTCTAACAAGAGATTGCTTAGCTTACTCCAAAATAAAGCCTGCAGTAAATCAGTTTGAAAGTCACCCATACTTCCAGCGCGAATCTCTCATCAAATTCTGTAGGAAGCACGGAATATGCGCTACAGCTCATACCCCTCTAGGAGGCTCTGTGGCCAACACTAAGGACTTTGGTTCAATTTCTTGTTTGGATGATCCAATCCTTAAGGGTTTGGCTAAGAAGTATGAAAAGAGTGCAGCACAGATTGTTCTCAGGTGGGGAATACAAAGGAATATAGCAGTCATTCCAAAGACCTCAAAAGTTGAGAGATTGAAAGAGAATCTGCAAGTTCTTGATGACTTCAAGCTGAGCAAAGAGGACATGGACCTCATCAAAACCATAGATAGGAAATACAGGACCAATCCGGCTTCCAAGACTTGGGGCCTAGATGTCTATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561 DUF568

Protein Analysis

278

Amino Acids

31.3

Weight (kDa)

9.07

Isoelectric Point (pI)

19.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	14 - 77	9.2e-09	Aldo/keto reductase family
Aldo_ket_red	PF00248	101 - 260	4.4e-29	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25290 AT3G25290 AT4G12980
fragaria_vesca	FvH4_2g18000
malus_domestica	MD05G1164000.v1.1 MD10G1153700.v1.1
prunus_persica	Prupe.8G192500_v2.0.a1 Prupe.8G192500_v2.0.a1
pyrus_communis	pycom05g15320 pycom10g13270
rosa_chinensis	RchiOBHm_Chr6g0283371
rosa_laevigata	RLG00000012832
rosa_multiflora	Rmu_sc0003166.1_g000008 Rmu_sc0013038.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185580
rosa_rugosa	Rorug06G0153100 Rorug06G0153200 Rorug06G0153300 Rorug06G0153400
rosa_samantha	Rh6AG265900 Rh6BG268500 Rh6CG268200 Rh6DG261700
rosa_wichuraiana	Rw6G023010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	813
AccII	CGCG	2 cut(s)	167, 477
AclWI	GGATC	1 cut(s)	584
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	232
AfaI	GTAC	2 cut(s)	259, 325
AfiI	CCNNNNNNNGG	4 cut(s)	41, 539, 780, 813
AflII	CTTAAG	1 cut(s)	599
AgsI	TTSAA	4 cut(s)	455, 573, 709, 739
AjnI	CCWGG	2 cut(s)	315, 326
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
AluBI	AGCT	4 cut(s)	346, 419, 524, 742
AluI	AGCT	4 cut(s)	346, 419, 524, 742
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	1 cut(s)	584
AoxI	GGCC	3 cut(s)	228, 549, 817
ApeKI	GCWGC	2 cut(s)	131, 632
ApoI	RAATTY	1 cut(s)	491
Asp700I	GAANNNNTTC	1 cut(s)	180
AspLEI	GCGC	5 cut(s)	60, 131, 169, 477, 518
AspS9I	GGNCC	3 cut(s)	760, 792, 817
AsuHPI	GGTGA	1 cut(s)	452
AsuII	TTCGAA	1 cut(s)	367
AvaII	GGWCC	2 cut(s)	760, 792
BalI	TGGCCA	1 cut(s)	551
BbvI	GCAGC	2 cut(s)	118, 644
BciT130I	CCWGG	2 cut(s)	317, 328
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	3 cut(s)	236, 536, 821
BfmI	CTRYAG	3 cut(s)	438, 496, 519
BfrI	CTTAAG	1 cut(s)	599
BisI	GCNGC	2 cut(s)	132, 633
BlpI	GCTNAGC	2 cut(s)	415, 743
BlsI	GCNGC	2 cut(s)	133, 634
Bme1390I	CCNGG	2 cut(s)	317, 328
Bme18I	GGWCC	2 cut(s)	760, 792
BmgT120I	GGNCC	3 cut(s)	760, 792, 817
BmiI	GGNNCC	1 cut(s)	818
BmrFI	CCNGG	2 cut(s)	317, 328
BmsI	GCATC	2 cut(s)	21, 279
Bpu1102I	GCTNAGC	2 cut(s)	415, 743
Bpu14I	TTCGAA	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	315
BsaXI	ACNNNNNCTCC	4 cut(s)	197, 227, 531, 561
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 539, 780, 813
Bse1I	ACTGG	2 cut(s)	231, 268
BseBI	CCWGG	2 cut(s)	317, 328
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	3 cut(s)	283, 294, 592
BseLI	CCNNNNNNNGG	4 cut(s)	41, 539, 780, 813
BseMII	CTCAG	2 cut(s)	661, 734
BseNI	ACTGG	2 cut(s)	231, 268
BseXI	GCAGC	2 cut(s)	118, 644
BsgI	GTGCAG	1 cut(s)	651
Bsh1236I	CGCG	2 cut(s)	167, 477
BshFI	GGCC	3 cut(s)	230, 551, 819
BsiSI	CCGG	1 cut(s)	800
BslI	CCNNNNNNNGG	4 cut(s)	41, 539, 780, 813
BsmAI	GTCTC	1 cut(s)	357
BsnI	GGCC	3 cut(s)	230, 551, 819
Bsp119I	TTCGAA	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	70, 75, 589
Bsp1720I	GCTNAGC	2 cut(s)	415, 743
BspANI	GGCC	3 cut(s)	230, 551, 819
BspCNI	CTCAG	2 cut(s)	660, 735
BspFNI	CGCG	2 cut(s)	167, 477
BspLI	GGNNCC	1 cut(s)	818
BspMAI	CTGCAG	1 cut(s)	442
BspPI	GGATC	1 cut(s)	584
BspT104I	TTCGAA	1 cut(s)	367
BspTI	CTTAAG	1 cut(s)	599
BsrI	ACTGG	2 cut(s)	231, 268
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	3 cut(s)	70, 75, 589
Bst2UI	CCWGG	2 cut(s)	317, 328
BstAFI	CTTAAG	1 cut(s)	599
BstBI	TTCGAA	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	171, 438
BstDEI	CTNAG	6 cut(s)	225, 415, 558, 612, 647, 743
BstENI	CCTNNNNNAGG	1 cut(s)	537
BstF5I	GGATG	3 cut(s)	283, 294, 592
BstFNI	CGCG	2 cut(s)	167, 477
BstHHI	GCGC	5 cut(s)	60, 131, 169, 477, 518
BstKTI	GATC	3 cut(s)	73, 78, 592
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	3 cut(s)	70, 75, 589
BstNI	CCWGG	2 cut(s)	317, 328
BstNSI	RCATGY	1 cut(s)	212
BstSCI	CCNGG	2 cut(s)	315, 326
BstSFI	CTRYAG	3 cut(s)	438, 496, 519
BstUI	CGCG	2 cut(s)	167, 477
BstV1I	GCAGC	2 cut(s)	118, 644
BsuRI	GGCC	3 cut(s)	230, 551, 819
BtsCI	GGATG	3 cut(s)	283, 294, 592
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	2 cut(s)	171, 438
CfoI	GCGC	5 cut(s)	60, 131, 169, 477, 518
Cfr13I	GGNCC	3 cut(s)	760, 792, 817
Csp6I	GTAC	2 cut(s)	258, 324
CviAII	CATG	6 cut(s)	61, 209, 298, 332, 757, 834
CviQI	GTAC	2 cut(s)	258, 324
DdeI	CTNAG	6 cut(s)	225, 415, 558, 612, 647, 743
DpnI	GATC	3 cut(s)	72, 77, 591
DpnII	GATC	3 cut(s)	70, 75, 589
EaeI	YGGCCR	1 cut(s)	549
Eco32I	GATATC	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	760, 792
Eco57I	CTGAAG	1 cut(s)	232
EcoNI	CCTNNNNNAGG	1 cut(s)	537
EcoO109I	RGGNCCY	1 cut(s)	817
EcoRII	CCWGG	2 cut(s)	315, 326
EcoRV	GATATC	1 cut(s)	312
EcoT22I	ATGCAT	1 cut(s)	835
FaeI	CATG	6 cut(s)	64, 212, 301, 335, 760, 837
FatI	CATG	6 cut(s)	60, 208, 297, 331, 756, 833
Fnu4HI	GCNGC	2 cut(s)	132, 633
FokI	GGATG	3 cut(s)	290, 301, 599
Fsp4HI	GCNGC	2 cut(s)	132, 633
FspBI	CTAG	3 cut(s)	236, 536, 821
GlaI	GCGC	5 cut(s)	59, 130, 168, 476, 517
GluI	GCNGC	2 cut(s)	132, 633
HaeIII	GGCC	3 cut(s)	230, 551, 819
HapII	CCGG	1 cut(s)	800
HhaI	GCGC	5 cut(s)	60, 131, 169, 477, 518
Hin1II	CATG	6 cut(s)	64, 212, 301, 335, 760, 837
Hin6I	GCGC	5 cut(s)	58, 129, 167, 475, 516
HinP1I	GCGC	5 cut(s)	58, 129, 167, 475, 516
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	3 cut(s)	378, 479, 715
HpaII	CCGG	1 cut(s)	800
HphI	GGTGA	1 cut(s)	452
Hpy188I	TCNGA	4 cut(s)	15, 75, 80, 251
Hpy188III	TCNNGA	4 cut(s)	28, 189, 199, 728
HpyCH4V	TGCA	5 cut(s)	173, 440, 632, 721, 833
HpyF3I	CTNAG	6 cut(s)	225, 415, 558, 612, 647, 743
Hsp92II	CATG	6 cut(s)	64, 212, 301, 335, 760, 837
HspAI	GCGC	5 cut(s)	58, 129, 167, 475, 516
Kzo9I	GATC	3 cut(s)	70, 75, 589
LmnI	GCTCC	1 cut(s)	205
Lsp1109I	GCAGC	2 cut(s)	118, 644
LweI	GCATC	2 cut(s)	21, 279
MaeI	CTAG	3 cut(s)	236, 536, 821
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	3 cut(s)	72, 77, 591
MboI	GATC	3 cut(s)	70, 75, 589
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	3 cut(s)	6, 491, 573
MluNI	TGGCCA	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	9 cut(s)	93, 195, 232, 274, 533, 543, 700, 745, 773
Mox20I	TGGCCA	1 cut(s)	551
Mph1103I	ATGCAT	1 cut(s)	835
MroXI	GAANNNNTTC	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	1 cut(s)	600
Msp20I	TGGCCA	1 cut(s)	551
MspCI	CTTAAG	1 cut(s)	599
MspI	CCGG	1 cut(s)	800
MspR9I	CCNGG	2 cut(s)	317, 328
MvaI	CCWGG	2 cut(s)	317, 328
MvnI	CGCG	2 cut(s)	167, 477
NdeII	GATC	3 cut(s)	70, 75, 589
NlaIII	CATG	6 cut(s)	64, 212, 301, 335, 760, 837
NlaIV	GGNNCC	1 cut(s)	818
NmuCI	GTSAC	1 cut(s)	458
NsiI	ATGCAT	1 cut(s)	835
NspI	RCATGY	1 cut(s)	212
NspV	TTCGAA	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	3 cut(s)	378, 479, 715
PflMI	CCANNNNNTGG	1 cut(s)	813
PkrI	GCNGC	2 cut(s)	133, 634
Psp6I	CCWGG	2 cut(s)	315, 326
PspGI	CCWGG	2 cut(s)	315, 326
PspN4I	GGNNCC	1 cut(s)	818
PspPI	GGNCC	3 cut(s)	760, 792, 817
PstI	CTGCAG	1 cut(s)	442
RsaI	GTAC	2 cut(s)	259, 325
RsaNI	GTAC	2 cut(s)	258, 324
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	2 cut(s)	132, 633
Sau3AI	GATC	3 cut(s)	70, 75, 589
Sau96I	GGNCC	3 cut(s)	760, 792, 817
ScrFI	CCNGG	2 cut(s)	317, 328
SfaNI	GCATC	2 cut(s)	21, 279
SfcI	CTRYAG	3 cut(s)	438, 496, 519
SfuI	TTCGAA	1 cut(s)	367
SinI	GGWCC	2 cut(s)	760, 792
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	3 cut(s)	6, 491, 573
SspMI	CTAG	3 cut(s)	236, 536, 821
StyD4I	CCNGG	2 cut(s)	315, 326
TaqI	TCGA	2 cut(s)	27, 367
TaqII	GACCGA	1 cut(s)	174
TasI	AATT	3 cut(s)	6, 491, 573
TfiI	GAWTC	3 cut(s)	378, 479, 715
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	2 cut(s)	131, 632
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	3 cut(s)	162, 205, 636
TspGWI	ACGGA	1 cut(s)	522
TspRI	CASTG	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	813
Vha464I	CTTAAG	1 cut(s)	599
VpaK11BI	GGWCC	2 cut(s)	760, 792
XagI	CCTNNNNNAGG	1 cut(s)	537
XapI	RAATTY	1 cut(s)	491
XceI	RCATGY	1 cut(s)	212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	3 cut(s)	236, 536, 821
Zsp2I	ATGCAT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.