MD05G1164000.v1.1

Auxin-induced in root cultures protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
29299763 .. 29302300
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1164000.v1.1.491

Sequence Viewer

Length: 1164 bp
ATGGCTTCTTCTTCCTCCTCCTCTTCTCTCTCAATATTTCTACCGCTCACCCTCCTTTTGCTTATCTCACCCGCGCTTTCCCTCACCTGCACCTCCCAAACCTTCGCCAACAACAAGCTCTACTCGAAATGCGCCGACCTCCCCGTCCTCAGCTCCTTCCTCCACTGGACCTACGACCCCGCCAACTCCACTCTCTCTATCGCCTTCATCTCGCCACCCTCCAAATCCGACGGCTGGATCGCCTGGGCCATCAACCCGACGTCCACCGGGATGCCTGGGTCCCAGACCCTCCTCGCCTACAAGAAGGCCGACGGCTCAATGGCCGTTAAAACCTTCAACATCAGCTCGTACAAGGATATTCTTGAGTCGAAGCTGTCGTTCGACGTGTGGGACACTGCGGCCGAGTCGTCCGGCGGCGTTTTTAGGCTGTTTGCGAAGTTGAAGGTGGAGAAGGAGACGGTGAACCAGGTTTGGCAGGTGGGGCCATCTGTTTCCGATGGGTTTCCGGCTAAACACGACTTCCTGACGCCGAATCTTAACTCGAAAGGGACACTGAGCTTGACCGGCGGCACCACCACCACCACCGCTAGCGGGGGGTCCAAGATGAAGAAGAGAAATATACATGGAATTTTGAATGCTGTGAGTTGGGGATTGATGTTTCCAATTGGAATCATCGTAGCAAGATACTTGAGGTCTTTTCCGTCTGCGGATCCAGCTTGGTTTTATCTTCATATATTCTGCCAGGTATCTGGTTATGCCATTGGTGTCGCCGGCTGGGCTACCGGAATTAAGCTCGGAAGTGAGTCCAAAGGGGTGGTTTACACTAATCATCGCAACATTGGAATTGTCCTGTTTGCCTTAGCAACTCTGCAGATATTCGCATTGTTCTTGAGGCCAAAGAAGGAGCACAAGTTCAGGTTCTACTGGAACATCTACCACCACACTCTCGGATACACGATTCTTGTCCTCGGCATTATAAATGTGTTTAAGGGCTTAGACATACTAAATCCTGCTAAGCATTGGAGATCTACTTACATAATTGTGATTATTACGTTGGGTGCACTTGCATTGTTATTGGAAGCAATCACTTGGATTGTAGTCTTGAAGAGAAAGTCAAGAAAGGCCACCAAGCCGTATGATGGATTGAACAACGGACAAGGCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

388

Amino Acids

42.31

Weight (kDa)

9.75

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 91 - 187 4e-28 Protein of unknown function (DUF568)
Cytochrom_B561 PF03188 217 - 332 1e-07 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 977
AarI CACCTGC 2 cut(s) 95, 466
AasI GACNNNNNNGTC 1 cut(s) 143
AatII GACGTC 1 cut(s) 263
Acc36I ACCTGC 2 cut(s) 95, 466
AccB1I GGYRCC 1 cut(s) 569
AccBSI CCGCTC 1 cut(s) 46
AccII CGCG 1 cut(s) 74
AciI CCGC 9 cut(s) 44, 72, 180, 398, 414, 567, 585, 591, 707
AclWI GGATC 3 cut(s) 245, 704, 717
AcoI YGGCCR 2 cut(s) 321, 399
AcsI RAATTY 1 cut(s) 627
AcyI GRCGYC 2 cut(s) 260, 527
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 3 cut(s) 234, 591, 1139
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 5 cut(s) 337, 442, 634, 1105, 1147
AjiI CACGTC 1 cut(s) 385
AjnI CCWGG 4 cut(s) 242, 274, 465, 741
AloI GAACNNNNNNTCC 2 cut(s) 896, 928
AluBI AGCT 7 cut(s) 118, 153, 345, 373, 558, 716, 793
AluI AGCT 7 cut(s) 118, 153, 345, 373, 558, 716, 793
Alw21I GWGCWC 2 cut(s) 909, 1063
Alw26I GTCTC 1 cut(s) 449
Alw44I GTGCAC 1 cut(s) 1059
AlwI GGATC 3 cut(s) 245, 704, 717
AoxI GGCC 7 cut(s) 246, 306, 321, 399, 482, 893, 1122
ApaLI GTGCAC 1 cut(s) 1059
ApoI RAATTY 1 cut(s) 627
AspLEI GCGC 2 cut(s) 76, 134
AspS9I GGNCC 5 cut(s) 168, 246, 279, 482, 597
AsuC2I CCSGG 1 cut(s) 268
AsuHPI GGTGA 4 cut(s) 40, 60, 76, 472
AsuNHI GCTAGC 1 cut(s) 587
AvaII GGWCC 3 cut(s) 168, 279, 597
BaeGI GKGCMC 1 cut(s) 1063
BamHI GGATCC 1 cut(s) 709
BanI GGYRCC 1 cut(s) 569
Bbv12I GWGCWC 2 cut(s) 909, 1063
BbvCI CCTCAGC 1 cut(s) 149
BccI CCATC 4 cut(s) 257, 491, 493, 1133
BceAI ACGGC 4 cut(s) 247, 308, 328, 1117
BciT130I CCWGG 4 cut(s) 244, 276, 467, 743
BciVI GTATCC 1 cut(s) 944
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 1 cut(s) 588
BfmI CTRYAG 1 cut(s) 869
BfuAI ACCTGC 2 cut(s) 95, 466
BfuI GTATCC 1 cut(s) 944
BglI GCCNNNNNGGC 1 cut(s) 776
BglII AGATCT 1 cut(s) 1025
BisI GCNGC 3 cut(s) 399, 415, 568
BlpI GCTNAGC 1 cut(s) 1014
BlsI GCNGC 3 cut(s) 400, 416, 569
Bme1390I CCNGG 5 cut(s) 244, 268, 276, 467, 743
Bme18I GGWCC 3 cut(s) 168, 279, 597
BmgBI CACGTC 1 cut(s) 385
BmgT120I GGNCC 5 cut(s) 168, 246, 279, 482, 597
BmiI GGNNCC 6 cut(s) 280, 281, 483, 571, 598, 711
BmrFI CCNGG 5 cut(s) 244, 268, 276, 467, 743
BmsI GCATC 1 cut(s) 261
BmtI GCTAGC 1 cut(s) 591
Bpu10I CCTNAGC 2 cut(s) 149, 859
Bpu1102I GCTNAGC 1 cut(s) 1014
BpuEI CTTGAG 3 cut(s) 383, 709, 910
BpuMI CCSGG 1 cut(s) 268
BsaHI GRCGYC 2 cut(s) 260, 527
BsaJI CCNNGG 3 cut(s) 243, 275, 967
BsaWI WCCGGW 1 cut(s) 782
BsaXI ACNNNNNCTCC 2 cut(s) 896, 926
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 591, 1139
Bse118I RCCGGY 2 cut(s) 563, 770
Bse1I ACTGG 2 cut(s) 170, 929
BseBI CCWGG 4 cut(s) 244, 276, 467, 743
BseDI CCNNGG 3 cut(s) 243, 275, 967
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 3 cut(s) 234, 591, 1139
BseMII CTCAG 2 cut(s) 163, 545
BseNI ACTGG 2 cut(s) 170, 929
BseRI GAGGAG 3 cut(s) 7, 10, 281
BseSI GKGCMC 1 cut(s) 1063
BseX3I CGGCCG 1 cut(s) 399
BseYI CCCAGC 1 cut(s) 774
BsgI GTGCAG 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 74
Bsh1285I CGRYCG 1 cut(s) 402
BshFI GGCC 7 cut(s) 248, 308, 323, 401, 484, 895, 1124
BshNI GGYRCC 1 cut(s) 569
BsiEI CGRYCG 1 cut(s) 402
BsiHKAI GWGCWC 2 cut(s) 909, 1063
BsiSI CCGG 6 cut(s) 267, 411, 506, 564, 771, 783
BslFI GGGAC 3 cut(s) 265, 404, 562
BslI CCNNNNNNNGG 3 cut(s) 234, 591, 1139
BsmAI GTCTC 1 cut(s) 449
BsmBI CGTCTC 1 cut(s) 449
BsmFI GGGAC 3 cut(s) 265, 404, 562
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 7 cut(s) 248, 308, 323, 401, 484, 895, 1124
Bsp1286I GDGCHC 2 cut(s) 909, 1063
Bsp143I GATC 3 cut(s) 237, 709, 1025
Bsp1720I GCTNAGC 1 cut(s) 1014
BspACI CCGC 9 cut(s) 44, 72, 180, 398, 414, 567, 585, 591, 707
BspANI GGCC 7 cut(s) 248, 308, 323, 401, 484, 895, 1124
BspCNI CTCAG 2 cut(s) 162, 546
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 6 cut(s) 280, 281, 483, 571, 598, 711
BspMAI CTGCAG 1 cut(s) 873
BspMI ACCTGC 2 cut(s) 95, 466
BspOI GCTAGC 1 cut(s) 591
BspPI GGATC 3 cut(s) 245, 704, 717
BspT107I GGYRCC 1 cut(s) 569
BsrBI CCGCTC 1 cut(s) 46
BsrFI RCCGGY 2 cut(s) 563, 770
BsrI ACTGG 2 cut(s) 170, 929
BssAI RCCGGY 2 cut(s) 563, 770
BssECI CCNNGG 3 cut(s) 243, 275, 967
BssMI GATC 3 cut(s) 237, 709, 1025
BssNI GRCGYC 2 cut(s) 260, 527
Bst2UI CCWGG 4 cut(s) 244, 276, 467, 743
Bst4CI ACNGT 1 cut(s) 460
Bst6I CTCTTC 3 cut(s) 28, 605, 1100
BstACI GRCGYC 2 cut(s) 260, 527
BstC8I GCNNGC 2 cut(s) 589, 772
BstDEI CTNAG 5 cut(s) 149, 554, 859, 994, 1014
BstF5I GGATG 1 cut(s) 276
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 2 cut(s) 76, 134
BstKTI GATC 3 cut(s) 240, 712, 1028
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 3 cut(s) 237, 709, 1025
BstMCI CGRYCG 1 cut(s) 402
BstMWI GCNNNNNNNGC 4 cut(s) 481, 564, 713, 776
BstNI CCWGG 4 cut(s) 244, 276, 467, 743
BstSCI CCNGG 5 cut(s) 242, 266, 274, 465, 741
BstSFI CTRYAG 1 cut(s) 869
BstSLI GKGCMC 1 cut(s) 1063
BstUI CGCG 1 cut(s) 74
BstX2I RGATCY 2 cut(s) 709, 1025
BstXI CCANNNNNNTGG 2 cut(s) 749, 814
BstYI RGATCY 2 cut(s) 709, 1025
BstZI CGGCCG 1 cut(s) 399
BsuI GTATCC 1 cut(s) 944
BsuRI GGCC 7 cut(s) 248, 308, 323, 401, 484, 895, 1124
BtgZI GCGATG 1 cut(s) 815
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 1 cut(s) 276
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 3 cut(s) 163, 393, 551
BveI ACCTGC 2 cut(s) 95, 466
Cac8I GCNNGC 2 cut(s) 589, 772
CfoI GCGC 2 cut(s) 76, 134
Cfr10I RCCGGY 2 cut(s) 563, 770
Cfr13I GGNCC 5 cut(s) 168, 246, 279, 482, 597
CseI GACGC 1 cut(s) 535
CsiI ACCWGGT 1 cut(s) 465
Csp6I GTAC 1 cut(s) 349
CviAII CATG 1 cut(s) 623
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 5 cut(s) 149, 554, 859, 994, 1014
DpnI GATC 3 cut(s) 239, 711, 1027
DpnII GATC 3 cut(s) 237, 709, 1025
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
EaeI YGGCCR 2 cut(s) 321, 399
EagI CGGCCG 1 cut(s) 399
Eam1104I CTCTTC 3 cut(s) 28, 605, 1100
EarI CTCTTC 3 cut(s) 28, 605, 1100
EclXI CGGCCG 1 cut(s) 399
Eco47I GGWCC 3 cut(s) 168, 279, 597
Eco52I CGGCCG 1 cut(s) 399
EcoO109I RGGNCCY 1 cut(s) 279
EcoRII CCWGG 4 cut(s) 242, 274, 465, 741
Esp3I CGTCTC 1 cut(s) 449
FaeI CATG 1 cut(s) 626
FaiI YATR 9 cut(s) 620, 624, 732, 734, 756, 977, 1001, 1037, 1137
FaqI GGGAC 3 cut(s) 265, 404, 562
FatI CATG 1 cut(s) 622
FauI CCCGC 3 cut(s) 79, 187, 584
Fnu4HI GCNGC 3 cut(s) 399, 415, 568
FokI GGATG 1 cut(s) 283
Fsp4HI GCNGC 3 cut(s) 399, 415, 568
FspBI CTAG 1 cut(s) 588
GlaI GCGC 2 cut(s) 75, 133
GluI GCNGC 3 cut(s) 399, 415, 568
GsaI CCCAGC 1 cut(s) 778
HaeIII GGCC 7 cut(s) 248, 308, 323, 401, 484, 895, 1124
HapII CCGG 6 cut(s) 267, 411, 506, 564, 771, 783
HgaI GACGC 1 cut(s) 535
HhaI GCGC 2 cut(s) 76, 134
Hin1I GRCGYC 2 cut(s) 260, 527
Hin1II CATG 1 cut(s) 626
Hin6I GCGC 2 cut(s) 74, 132
HinP1I GCGC 2 cut(s) 74, 132
HinfI GANTC 6 cut(s) 365, 404, 532, 669, 803, 958
HpaII CCGG 6 cut(s) 267, 411, 506, 564, 771, 783
HphI GGTGA 4 cut(s) 40, 60, 76, 472
Hpy166II GTNNAC 4 cut(s) 264, 463, 820, 1061
Hpy188I TCNGA 4 cut(s) 229, 496, 797, 950
Hpy188III TCNNGA 5 cut(s) 362, 523, 889, 1102, 1116
Hpy8I GTNNAC 4 cut(s) 264, 463, 820, 1061
Hpy99I CGWCG 4 cut(s) 233, 262, 314, 386
HpyAV CCTTC 8 cut(s) 112, 166, 214, 298, 343, 436, 445, 895
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4IV ACGT 3 cut(s) 260, 384, 1052
HpyCH4V TGCA 4 cut(s) 90, 871, 1061, 1067
HpyF10VI GCNNNNNNNGC 4 cut(s) 481, 564, 713, 776
HpyF3I CTNAG 5 cut(s) 149, 554, 859, 994, 1014
HpySE526I ACGT 3 cut(s) 260, 384, 1052
Hsp92I GRCGYC 2 cut(s) 260, 527
Hsp92II CATG 1 cut(s) 626
HspAI GCGC 2 cut(s) 74, 132
KflI GGGWCCC 1 cut(s) 279
KroI GCCGGC 1 cut(s) 770
KroNI GCCGGC 1 cut(s) 772
Kzo9I GATC 3 cut(s) 237, 709, 1025
LmnI GCTCC 2 cut(s) 158, 904
LweI GCATC 1 cut(s) 261
MabI ACCWGGT 1 cut(s) 465
MaeI CTAG 1 cut(s) 588
MaeII ACGT 3 cut(s) 260, 384, 1052
MalI GATC 3 cut(s) 239, 711, 1027
MbiI CCGCTC 1 cut(s) 46
MboI GATC 3 cut(s) 237, 709, 1025
MboII GAAGA 6 cut(s) 3, 15, 619, 622, 719, 1117
MfeI CAATTG 1 cut(s) 663
MflI RGATCY 2 cut(s) 709, 1025
MhlI GDGCHC 2 cut(s) 909, 1063
MluCI AATT 5 cut(s) 627, 663, 786, 843, 1038
MlyI GAGTC 3 cut(s) 374, 413, 812
MmeI TCCRAC 1 cut(s) 252
MroNI GCCGGC 1 cut(s) 770
MseI TTAA 4 cut(s) 327, 537, 789, 987
MslI CAYNNNNRTG 2 cut(s) 269, 1040
MspI CCGG 6 cut(s) 267, 411, 506, 564, 771, 783
MspR9I CCNGG 5 cut(s) 244, 268, 276, 467, 743
MunI CAATTG 1 cut(s) 663
Mva1269I GAATGC 1 cut(s) 640
MvaI CCWGG 4 cut(s) 244, 276, 467, 743
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 4 cut(s) 481, 564, 713, 776
NaeI GCCGGC 1 cut(s) 772
NciI CCSGG 1 cut(s) 268
NdeII GATC 3 cut(s) 237, 709, 1025
NgoMIV GCCGGC 1 cut(s) 770
NheI GCTAGC 1 cut(s) 587
NlaIII CATG 1 cut(s) 626
NlaIV GGNNCC 6 cut(s) 280, 281, 483, 571, 598, 711
NmeAIII GCCGAG 2 cut(s) 427, 948
PaqCI CACCTGC 2 cut(s) 95, 466
PcsI WCGNNNNNNNCGW 1 cut(s) 374
PctI GAATGC 1 cut(s) 640
PdiI GCCGGC 1 cut(s) 772
PfeI GAWTC 3 cut(s) 532, 669, 958
PkrI GCNGC 3 cut(s) 400, 416, 569
PleI GAGTC 3 cut(s) 373, 412, 811
PpsI GAGTC 3 cut(s) 373, 412, 811
PpuMI RGGWCCY 1 cut(s) 279
PsiI TTATAA 1 cut(s) 977
Psp5II RGGWCCY 1 cut(s) 279
Psp6I CCWGG 4 cut(s) 242, 274, 465, 741
PspFI CCCAGC 1 cut(s) 774
PspGI CCWGG 4 cut(s) 242, 274, 465, 741
PspN4I GGNNCC 6 cut(s) 280, 281, 483, 571, 598, 711
PspPI GGNCC 5 cut(s) 168, 246, 279, 482, 597
PspPPI RGGWCCY 1 cut(s) 279
PstI CTGCAG 1 cut(s) 873
PsuI RGATCY 2 cut(s) 709, 1025
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 2 cut(s) 269, 1040
SaqAI TTAA 4 cut(s) 327, 537, 789, 987
SatI GCNGC 3 cut(s) 399, 415, 568
Sau3AI GATC 3 cut(s) 237, 709, 1025
Sau96I GGNCC 5 cut(s) 168, 246, 279, 482, 597
SchI GAGTC 3 cut(s) 374, 413, 812
ScrFI CCNGG 5 cut(s) 244, 268, 276, 467, 743
SduI GDGCHC 2 cut(s) 909, 1063
SexAI ACCWGGT 1 cut(s) 465
SfaNI GCATC 1 cut(s) 261
SfcI CTRYAG 1 cut(s) 869
SinI GGWCC 3 cut(s) 168, 279, 597
SmiMI CAYNNNNRTG 2 cut(s) 269, 1040
SmlI CTYRAG 3 cut(s) 362, 688, 889
SmoI CTYRAG 3 cut(s) 362, 688, 889
Sse9I AATT 5 cut(s) 627, 663, 786, 843, 1038
SsiI CCGC 9 cut(s) 44, 72, 180, 398, 414, 567, 585, 591, 707
SspI AATATT 1 cut(s) 36
SspMI CTAG 1 cut(s) 588
StyD4I CCNGG 5 cut(s) 242, 266, 274, 465, 741
TaaI ACNGT 1 cut(s) 460
TaiI ACGT 3 cut(s) 263, 387, 1055
TaqI TCGA 4 cut(s) 125, 368, 381, 542
TasI AATT 5 cut(s) 627, 663, 786, 843, 1038
TauI GCSGC 3 cut(s) 401, 417, 570
TfiI GAWTC 3 cut(s) 532, 669, 958
Tru1I TTAA 4 cut(s) 327, 537, 789, 987
Tru9I TTAA 4 cut(s) 327, 537, 789, 987
TscAI CASTG 3 cut(s) 170, 400, 558
TspDTI ATGAA 3 cut(s) 196, 620, 719
TspGWI ACGGA 1 cut(s) 690
TspRI CASTG 3 cut(s) 170, 400, 558
VneI GTGCAC 1 cut(s) 1059
VpaK11BI GGWCC 3 cut(s) 168, 279, 597
XapI RAATTY 1 cut(s) 627
XspI CTAG 1 cut(s) 588
ZraI GACGTC 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.