Rorug06G0153400

Auxin-induced in root cultures protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007761
Physical Location & Seq
Forward (+)
22055188 .. 22059669
4482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0153400.1

Sequence Viewer

Length: 930 bp
ATGTCGATAACACTCAACAGCGGGTTCAAAATGCCAGTAATCGGTCTTGGTGTTTGGCGCATGGAAGGAAAAGAAATCAGAGACCTCATCATCAATTCCATCAACATTGGTTATCGCCATTTTGACTGCGCTGCTGATTACAAGAATGAATCAGAAGTTGGAGAGGCACTAGCAGAAGCATTTTCCACTGGGCTTGTTAAGCGAGAGGATCTCTTCATCACCACCAAGCTTTGGAATTCAGATCATGGACATGTTGTGGAGGCCTGTAAAGACAGTCTAAAGAAGCTTCGGTTGGATTATCTAGATCTGTACCTTGTTCACTTTCCTGTTGCCACGAAGCACACCGGAGTTGGTGCAACTGACAGTGCTTTGGATGAGGATGGGGTGCTAGAGATAGACACAACCATTTCTCTAGAAACTACTTGGCATGCTATGGAAGATCTTGTTTCTCTGGGTTTAGTTCGTAGTATTGGGATCAGCAACTATGACATCTTTCTCACTAGAGATTGCTTAGCCTATTCCAAAGTGAAGCCTGCTGTGAATCAGATTGAAACTCACCCATACTTCCAGCGTGATTCTCTTGTCAAATTCTGTCTGAAGCACGGCATCTCTGTCACAGCCCACACTCCACTTGGAGGTGCTGCAGCCAACACTGAATGGTTTGGTTCAGTTTCAGCTCTGGATGATCCAGTTCTCAAGAATCTTGCTGAGAAATACAAAAAGACAGTAGCCCAGGTTGTTCTTCGATGGGGCATTCAACGCAACACGGTTGTAATCCCGAAGACGTCAAAACTCGAGAGATTGAAAGAGAATTTTCAAGTCTTTGACTTTGAGATTTCCAAAGAGGACATGGACGTAATTAAAAAGGTGGACAGGAAACTCCGGACCAATCAACCTGCCAAGTTTTGGGGCGTTGATCTATTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

309

Amino Acids

34.75

Weight (kDa)

6.16

Isoelectric Point (pI)

26.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 14 - 291 1e-52 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 788
Acc36I ACCTGC 1 cut(s) 904
AccB7I CCANNNNNTGG 2 cut(s) 231, 906
AccIII TCCGGA 1 cut(s) 882
AciI CCGC 1 cut(s) 21
AclWI GGATC 3 cut(s) 216, 482, 680
AcsI RAATTY 3 cut(s) 235, 587, 811
AcuI CTGAAG 1 cut(s) 617
AcyI GRCGYC 1 cut(s) 785
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 4 cut(s) 41, 231, 635, 906
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 5 cut(s) 28, 551, 758, 805, 818
AjnI CCWGG 1 cut(s) 732
AjuI GAANNNNNNNTTGG 4 cut(s) 141, 173, 275, 307
AluBI AGCT 3 cut(s) 229, 286, 677
AluI AGCT 3 cut(s) 229, 286, 677
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 3 cut(s) 216, 482, 680
Ama87I CYCGRG 1 cut(s) 794
Aor13HI TCCGGA 1 cut(s) 882
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 3 cut(s) 131, 641, 644
ApoI RAATTY 3 cut(s) 235, 587, 811
AspLEI GCGC 2 cut(s) 60, 131
AspS9I GGNCC 1 cut(s) 885
AsuHPI GGTGA 2 cut(s) 211, 548
AvaI CYCGRG 1 cut(s) 794
AvaII GGWCC 1 cut(s) 885
BbsI GAAGAC 1 cut(s) 788
BbvI GCAGC 3 cut(s) 118, 628, 656
BccI CCATC 3 cut(s) 107, 374, 741
BceAI ACGGC 1 cut(s) 619
BciT130I CCWGG 1 cut(s) 734
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 5 cut(s) 170, 302, 389, 413, 501
BfmI CTRYAG 1 cut(s) 642
BfuAI ACCTGC 1 cut(s) 904
BglII AGATCT 2 cut(s) 304, 439
BisI GCNGC 3 cut(s) 132, 642, 645
BlpI GCTNAGC 1 cut(s) 511
BlsI GCNGC 3 cut(s) 133, 643, 646
Bme1390I CCNGG 1 cut(s) 734
Bme18I GGWCC 1 cut(s) 885
BmeT110I CYCGRG 1 cut(s) 794
BmgT120I GGNCC 1 cut(s) 885
BmrFI CCNGG 1 cut(s) 734
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 1 cut(s) 615
BmuI ACTGGG 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 788
BplI GAGNNNNNCTC 2 cut(s) 195, 227
Bpu1102I GCTNAGC 1 cut(s) 511
BpuEI CTTGAG 1 cut(s) 680
BsaHI GRCGYC 1 cut(s) 785
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 732
BsaWI WCCGGW 2 cut(s) 344, 882
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 231, 635, 906
Bse1I ACTGG 3 cut(s) 35, 193, 689
BseAI TCCGGA 1 cut(s) 882
BseBI CCWGG 1 cut(s) 734
BseDI CCNNGG 1 cut(s) 732
BseGI GGATG 3 cut(s) 379, 385, 688
BseLI CCNNNNNNNGG 4 cut(s) 41, 231, 635, 906
BseMII CTCAG 1 cut(s) 699
BseNI ACTGG 3 cut(s) 35, 193, 689
BseXI GCAGC 3 cut(s) 118, 628, 656
BshFI GGCC 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 794
BsiSI CCGG 2 cut(s) 345, 883
BslI CCNNNNNNNGG 4 cut(s) 41, 231, 635, 906
BsmAI GTCTC 1 cut(s) 75
BsmI GAATGC 1 cut(s) 753
BsnI GGCC 1 cut(s) 263
Bso31I GGTCTC 1 cut(s) 75
BsoBI CYCGRG 1 cut(s) 794
Bsp13I TCCGGA 1 cut(s) 882
Bsp143I GATC 7 cut(s) 208, 241, 304, 439, 474, 685, 916
Bsp1720I GCTNAGC 1 cut(s) 511
BspACI CCGC 1 cut(s) 21
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 1 cut(s) 700
BspEI TCCGGA 1 cut(s) 882
BspMAI CTGCAG 1 cut(s) 646
BspMI ACCTGC 1 cut(s) 904
BspPI GGATC 3 cut(s) 216, 482, 680
BspTNI GGTCTC 1 cut(s) 75
BsrI ACTGG 3 cut(s) 35, 193, 689
BssECI CCNNGG 1 cut(s) 732
BssMI GATC 7 cut(s) 208, 241, 304, 439, 474, 685, 916
BssNI GRCGYC 1 cut(s) 785
Bst2UI CCWGG 1 cut(s) 734
Bst4CI ACNGT 4 cut(s) 275, 365, 727, 769
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 785
BstC8I GCNNGC 2 cut(s) 429, 534
BstDEI CTNAG 3 cut(s) 511, 708, 927
BstF5I GGATG 3 cut(s) 379, 385, 688
BstHHI GCGC 2 cut(s) 60, 131
BstKTI GATC 7 cut(s) 211, 244, 307, 442, 477, 688, 919
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 7 cut(s) 208, 241, 304, 439, 474, 685, 916
BstMWI GCNNNNNNNGC 2 cut(s) 199, 759
BstNI CCWGG 1 cut(s) 734
BstNSI RCATGY 2 cut(s) 254, 431
BstSCI CCNGG 1 cut(s) 732
BstSFI CTRYAG 1 cut(s) 642
BstV1I GCAGC 3 cut(s) 118, 628, 656
BstV2I GAAGAC 1 cut(s) 788
BstX2I RGATCY 3 cut(s) 208, 304, 439
BstYI RGATCY 3 cut(s) 208, 304, 439
BsuRI GGCC 1 cut(s) 263
BtsCI GGATG 3 cut(s) 379, 385, 688
BtsIMutI CAGTG 3 cut(s) 186, 370, 651
BveI ACCTGC 1 cut(s) 904
Cac8I GCNNGC 2 cut(s) 429, 534
CfoI GCGC 2 cut(s) 60, 131
Cfr13I GGNCC 1 cut(s) 885
Csp6I GTAC 1 cut(s) 310
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviAII CATG 5 cut(s) 61, 245, 251, 428, 850
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 3 cut(s) 511, 708, 927
DpnI GATC 7 cut(s) 210, 243, 306, 441, 476, 687, 918
DpnII GATC 7 cut(s) 208, 241, 304, 439, 474, 685, 916
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco147I AGGCCT 1 cut(s) 263
Eco31I GGTCTC 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 885
Eco57I CTGAAG 1 cut(s) 617
Eco88I CYCGRG 1 cut(s) 794
EcoRI GAATTC 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 732
FaeI CATG 5 cut(s) 64, 248, 254, 431, 853
FaiI YATR 8 cut(s) 62, 246, 252, 429, 434, 486, 562, 851
FatI CATG 5 cut(s) 60, 244, 250, 427, 849
FauI CCCGC 1 cut(s) 14
Fnu4HI GCNGC 3 cut(s) 132, 642, 645
FokI GGATG 3 cut(s) 386, 392, 695
Fsp4HI GCNGC 3 cut(s) 132, 642, 645
FspBI CTAG 5 cut(s) 170, 302, 389, 413, 501
GlaI GCGC 2 cut(s) 59, 130
GluI GCNGC 3 cut(s) 132, 642, 645
HaeIII GGCC 1 cut(s) 263
HapII CCGG 2 cut(s) 345, 883
HhaI GCGC 2 cut(s) 60, 131
Hin1I GRCGYC 1 cut(s) 785
Hin1II CATG 5 cut(s) 64, 248, 254, 431, 853
Hin6I GCGC 2 cut(s) 58, 129
HinP1I GCGC 2 cut(s) 58, 129
HindIII AAGCTT 2 cut(s) 227, 284
HinfI GANTC 4 cut(s) 149, 541, 575, 700
HpaII CCGG 2 cut(s) 345, 883
HphI GGTGA 2 cut(s) 211, 548
Hpy166II GTNNAC 2 cut(s) 319, 871
Hpy188I TCNGA 5 cut(s) 80, 154, 241, 546, 597
Hpy188III TCNNGA 7 cut(s) 302, 413, 680, 697, 778, 796, 883
Hpy8I GTNNAC 2 cut(s) 319, 871
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 4 cut(s) 275, 365, 727, 769
HpyCH4IV ACGT 2 cut(s) 785, 855
HpyCH4V TGCA 2 cut(s) 356, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 759
HpyF3I CTNAG 3 cut(s) 511, 708, 927
HpySE526I ACGT 2 cut(s) 785, 855
Hsp92I GRCGYC 1 cut(s) 785
Hsp92II CATG 5 cut(s) 64, 248, 254, 431, 853
HspAI GCGC 2 cut(s) 58, 129
Kpn2I TCCGGA 1 cut(s) 882
Kzo9I GATC 7 cut(s) 208, 241, 304, 439, 474, 685, 916
Lsp1109I GCAGC 3 cut(s) 118, 628, 656
LweI GCATC 1 cut(s) 615
MaeI CTAG 5 cut(s) 170, 302, 389, 413, 501
MaeII ACGT 2 cut(s) 785, 855
MaeIII GTNAC 1 cut(s) 613
MalI GATC 7 cut(s) 210, 243, 306, 441, 476, 687, 918
MboI GATC 7 cut(s) 208, 241, 304, 439, 474, 685, 916
MboII GAAGA 4 cut(s) 205, 449, 734, 793
MflI RGATCY 3 cut(s) 208, 304, 439
MluCI AATT 5 cut(s) 94, 235, 587, 811, 858
MmeI TCCRAC 2 cut(s) 139, 273
MnlI CCTC 7 cut(s) 95, 157, 199, 253, 370, 629, 838
MroI TCCGGA 1 cut(s) 882
MseI TTAA 2 cut(s) 198, 861
MslI CAYNNNNRTG 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 21
MspI CCGG 2 cut(s) 345, 883
MspR9I CCNGG 1 cut(s) 734
Mva1269I GAATGC 1 cut(s) 753
MvaI CCWGG 1 cut(s) 734
MwoI GCNNNNNNNGC 2 cut(s) 199, 759
NdeII GATC 7 cut(s) 208, 241, 304, 439, 474, 685, 916
NlaIII CATG 5 cut(s) 64, 248, 254, 431, 853
NmuCI GTSAC 1 cut(s) 613
NspI RCATGY 2 cut(s) 254, 431
PaeI GCATGC 1 cut(s) 431
PaeR7I CTCGAG 1 cut(s) 794
PceI AGGCCT 1 cut(s) 263
PciI ACATGT 1 cut(s) 250
PctI GAATGC 1 cut(s) 753
PfeI GAWTC 4 cut(s) 149, 541, 575, 700
PflMI CCANNNNNTGG 2 cut(s) 231, 906
PkrI GCNGC 3 cut(s) 133, 643, 646
PscI ACATGT 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 732
PspGI CCWGG 1 cut(s) 732
PspPI GGNCC 1 cut(s) 885
PstI CTGCAG 1 cut(s) 646
PsuI RGATCY 3 cut(s) 208, 304, 439
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 2 cut(s) 198, 861
SatI GCNGC 3 cut(s) 132, 642, 645
Sau3AI GATC 7 cut(s) 208, 241, 304, 439, 474, 685, 916
Sau96I GGNCC 1 cut(s) 885
ScrFI CCNGG 1 cut(s) 734
SfaNI GCATC 1 cut(s) 615
SfcI CTRYAG 1 cut(s) 642
Sfr274I CTCGAG 1 cut(s) 794
SinI GGWCC 1 cut(s) 885
SlaI CTCGAG 1 cut(s) 794
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 2 cut(s) 695, 794
SmoI CTYRAG 2 cut(s) 695, 794
SphI GCATGC 1 cut(s) 431
Sse9I AATT 5 cut(s) 94, 235, 587, 811, 858
SseBI AGGCCT 1 cut(s) 263
SsiI CCGC 1 cut(s) 21
SspMI CTAG 5 cut(s) 170, 302, 389, 413, 501
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 732
TaaI ACNGT 4 cut(s) 275, 365, 727, 769
TaiI ACGT 2 cut(s) 788, 858
TaqI TCGA 3 cut(s) 5, 745, 795
TaqII GACCGA 1 cut(s) 32
TasI AATT 5 cut(s) 94, 235, 587, 811, 858
TfiI GAWTC 4 cut(s) 149, 541, 575, 700
Tru1I TTAA 2 cut(s) 198, 861
Tru9I TTAA 2 cut(s) 198, 861
TscAI CASTG 3 cut(s) 193, 370, 658
TseFI GTSAC 1 cut(s) 613
TseI GCWGC 3 cut(s) 131, 641, 644
Tsp45I GTSAC 1 cut(s) 613
TspDTI ATGAA 2 cut(s) 162, 205
TspRI CASTG 3 cut(s) 193, 370, 658
Van91I CCANNNNNTGG 2 cut(s) 231, 906
VpaK11BI GGWCC 1 cut(s) 885
XapI RAATTY 3 cut(s) 235, 587, 811
XbaI TCTAGA 2 cut(s) 301, 412
XceI RCATGY 2 cut(s) 254, 431
XcmI CCANNNNNNNNNTGG 2 cut(s) 629, 847
XhoI CTCGAG 1 cut(s) 794
XspI CTAG 5 cut(s) 170, 302, 389, 413, 501
ZraI GACGTC 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.