AT4G12980

Cytochrome b561 and DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007761
Physical Location & Seq
Reverse (-)
7589247 .. 7591259
2013 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G12980.1

Sequence Viewer

Length: 1185 bp
ATGGATTCTTCTTACCTTAGAATCTCTCTTTCTTTTCTCTTCTGGGCTTTACTACTCTCACCGGCTGTGTCACAGTCATCTTCTTGTTCGTCACAGACATTTTCCGGCGTCAAATCTTACCCTCACTGTCTCGACCTCCCTGATCTTAAAGCCATTCTCCATTACTCTTATGACGCATCTAACACAACTCTCGCCGTTGTTTTCTCTGCTCCACCGTCAAAACCTGGTGGTTGGATCGCTTGGGCTATTAACCCTAAATCCACCGGCATGGCTGGATCTCAAGCCCTCGTTGCCTCTAAGGACCCTAGCACCGGCGTTGCTTCCGTGACGACCCTTAACATCGTCTCTTACAGCTCTCTGGTTCCCTCGAAACTGTCCTTTGACGTGTGGGATGTTAAGGCGGAGGAGGCGGCTAATGACGGTGGAGCTTTACGAATCTTTGCGAAAGTGAAGGTTCCGGCGGATTTAGCGGCGAGTGGGAAGGTTAACCAGGTTTGGCAGGTTGGTCCGGGAGTGTCTAATGGGAGGATACAGGCTCATGATTTCAGCGGTCCCAATCTTAACTCAGTGGGATCACTCGATTTAACCGGGACCACCCCCGGAGTCCCTGTCTCCGGAGGTGGTGGTGCCGGTAATTCTAGAATCCACAAGAGAAATATCCATGGAATATTGAACGCAGTGAGTTGGGGACTTCTATTTCCCATTGGAGCAATGATAGCTAGGTATATGAGAATCTTTGAATCAGCAGATCCTGCTTGGTTTTACCTCCACGTGTCATGCCAATTCTCTGCTTATGTCATCGGTGTTGCCGGATGGGCCACCGGACTCAAGCTTGGTTCAGAATCTAAAGGTATTCAGTACAACACTCACCGGAACATCGGCATCTGTCTCTTCTCTATAGCCACTCTTCAGATGTTTGCGATGCTGTTGCGGCCAAGGAAGGACCACAAGTTTAGATTCGTTTGGAATATTTACCACCACGGAGTTGGATACTCTATCCTCATCCTTGGAATCATCAATGTTTTCAAAGGTCTTAGCATCTTGAATCCAAAGCATACTTACAAGACGGCTTATATCGCTGTGATTGGGACCTTAGGAGGCATCACGTTACTCTTGGAAGTTGTTACTTGGGTCATTGTCCTCAAGAGAAAATCTGCCAAGTCTACAAAGCCTCTCAAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

394

Amino Acids

42.23

Weight (kDa)

9.73

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 90 - 195 1.1e-26 Protein of unknown function (DUF568)
Cytochrom_B561 PF03188 221 - 345 1.1e-06 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 626
AccI GTMKAC 1 cut(s) 1163
AccIII TCCGGA 1 cut(s) 614
AciI CCGC 6 cut(s) 401, 410, 461, 470, 549, 931
AclWI GGATC 4 cut(s) 242, 283, 580, 743
AcoI YGGCCR 1 cut(s) 932
AcuI CTGAAG 1 cut(s) 893
AcvI CACGTG 1 cut(s) 772
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 860
AfiI CCNNNNNNNGG 2 cut(s) 311, 614
AflIII ACRYGT 2 cut(s) 384, 771
AgsI TTSAA 4 cut(s) 673, 740, 1027, 1045
AjiI CACGTC 1 cut(s) 385
AjnI CCWGG 2 cut(s) 223, 489
AluBI AGCT 4 cut(s) 354, 428, 719, 832
AluI AGCT 4 cut(s) 354, 428, 719, 832
Alw26I GTCTC 4 cut(s) 134, 349, 616, 893
AlwI GGATC 4 cut(s) 242, 283, 580, 743
AlwNI CAGNNNCTG 1 cut(s) 752
Aor13HI TCCGGA 1 cut(s) 614
AoxI GGCC 3 cut(s) 816, 932, 1179
AspS9I GGNCC 7 cut(s) 301, 506, 551, 591, 816, 943, 1089
AsuC2I CCSGG 3 cut(s) 510, 589, 600
AsuHPI GGTGA 2 cut(s) 51, 860
AvaII GGWCC 6 cut(s) 301, 506, 551, 591, 943, 1089
AxyI CCTNAGG 1 cut(s) 1093
BanI GGYRCC 1 cut(s) 626
BbrPI CACGTG 1 cut(s) 772
BccI CCATC 1 cut(s) 807
BceAI ACGGC 2 cut(s) 179, 1083
BcgI CGANNNNNNTGC 2 cut(s) 910, 944
BciT130I CCWGG 2 cut(s) 225, 491
BciVI GTATCC 2 cut(s) 522, 983
BcnI CCSGG 3 cut(s) 510, 589, 600
BcoDI GTCTC 4 cut(s) 134, 349, 616, 893
BfaI CTAG 3 cut(s) 306, 639, 720
BfmI CTRYAG 1 cut(s) 897
BfuAI ACCTGC 1 cut(s) 490
BfuI GTATCC 2 cut(s) 522, 983
BglI GCCNNNNNGGC 1 cut(s) 815
BisI GCNGC 3 cut(s) 411, 471, 932
BlsI GCNGC 3 cut(s) 412, 472, 933
Bme1390I CCNGG 5 cut(s) 225, 491, 510, 589, 600
Bme18I GGWCC 6 cut(s) 301, 506, 551, 591, 943, 1089
BmgBI CACGTC 1 cut(s) 385
BmgT120I GGNCC 7 cut(s) 301, 506, 551, 591, 816, 943, 1089
BmiI GGNNCC 7 cut(s) 303, 363, 456, 553, 592, 628, 1090
BmrFI CCNGG 5 cut(s) 225, 491, 510, 589, 600
BmsI GCATC 5 cut(s) 185, 891, 912, 1047, 1110
BpuEI CTTGAG 4 cut(s) 264, 812, 1127, 1160
BpuMI CCSGG 3 cut(s) 510, 589, 600
BsaAI YACGTR 1 cut(s) 772
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 5 cut(s) 598, 661, 935, 979, 1006
BsaWI WCCGGW 3 cut(s) 614, 821, 870
BsaXI ACNNNNNCTCC 2 cut(s) 594, 624
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 614
Bse118I RCCGGY 4 cut(s) 61, 263, 311, 629
Bse21I CCTNAGG 1 cut(s) 1093
Bse3DI GCAATG 1 cut(s) 717
BseAI TCCGGA 1 cut(s) 614
BseBI CCWGG 2 cut(s) 225, 491
BseDI CCNNGG 5 cut(s) 598, 661, 935, 979, 1006
BseGI GGATG 3 cut(s) 397, 818, 1002
BseLI CCNNNNNNNGG 2 cut(s) 311, 614
BseMI GCAATG 1 cut(s) 717
BseMII CTCAG 1 cut(s) 579
BseRI GAGGAG 1 cut(s) 419
BshFI GGCC 3 cut(s) 818, 934, 1181
BshNI GGYRCC 1 cut(s) 626
BslFI GGGAC 5 cut(s) 537, 590, 604, 702, 1102
BslI CCNNNNNNNGG 2 cut(s) 311, 614
BsmAI GTCTC 4 cut(s) 134, 349, 616, 893
BsmBI CGTCTC 1 cut(s) 349
BsmFI GGGAC 5 cut(s) 537, 590, 604, 702, 1102
BsnI GGCC 3 cut(s) 818, 934, 1181
Bsp13I TCCGGA 1 cut(s) 614
Bsp143I GATC 5 cut(s) 142, 234, 275, 572, 748
Bsp19I CCATGG 1 cut(s) 661
BspACI CCGC 6 cut(s) 401, 410, 461, 470, 549, 931
BspANI GGCC 3 cut(s) 818, 934, 1181
BspCNI CTCAG 1 cut(s) 578
BspEI TCCGGA 1 cut(s) 614
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 7 cut(s) 303, 363, 456, 553, 592, 628, 1090
BspMI ACCTGC 1 cut(s) 490
BspPI GGATC 4 cut(s) 242, 283, 580, 743
BspT107I GGYRCC 1 cut(s) 626
BsrDI GCAATG 1 cut(s) 717
BsrFI RCCGGY 4 cut(s) 61, 263, 311, 629
BssAI RCCGGY 4 cut(s) 61, 263, 311, 629
BssECI CCNNGG 5 cut(s) 598, 661, 935, 979, 1006
BssMI GATC 5 cut(s) 142, 234, 275, 572, 748
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 3 cut(s) 661, 935, 1006
Bst2UI CCWGG 2 cut(s) 225, 491
Bst4CI ACNGT 5 cut(s) 75, 128, 216, 375, 422
Bst6I CTCTTC 3 cut(s) 44, 896, 912
BstACI GRCGYC 1 cut(s) 108
BstAPI GCANNNNNTGC 1 cut(s) 752
BstBAI YACGTR 1 cut(s) 772
BstDEI CTNAG 5 cut(s) 17, 297, 565, 1034, 1093
BstDSI CCRYGG 2 cut(s) 661, 979
BstF5I GGATG 3 cut(s) 397, 818, 1002
BstKTI GATC 5 cut(s) 145, 237, 278, 575, 751
BstMAI GTCTC 4 cut(s) 134, 349, 616, 893
BstMBI GATC 5 cut(s) 142, 234, 275, 572, 748
BstMWI GCNNNNNNNGC 8 cut(s) 290, 407, 467, 716, 752, 815, 931, 1076
BstNI CCWGG 2 cut(s) 225, 491
BstSCI CCNGG 5 cut(s) 223, 489, 508, 587, 598
BstSFI CTRYAG 1 cut(s) 897
BstX2I RGATCY 2 cut(s) 275, 748
BstXI CCANNNNNNTGG 2 cut(s) 268, 986
BstYI RGATCY 2 cut(s) 275, 748
Bsu36I CCTNAGG 1 cut(s) 1093
BsuI GTATCC 2 cut(s) 522, 983
BsuRI GGCC 3 cut(s) 818, 934, 1181
BtgI CCRYGG 2 cut(s) 661, 979
BtgZI GCGATG 1 cut(s) 935
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 3 cut(s) 397, 818, 1002
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 3 cut(s) 124, 573, 684
BveI ACCTGC 1 cut(s) 490
CaiI CAGNNNCTG 1 cut(s) 752
CciI TCATGA 1 cut(s) 538
Cfr10I RCCGGY 4 cut(s) 61, 263, 311, 629
Cfr13I GGNCC 7 cut(s) 301, 506, 551, 591, 816, 943, 1089
CseI GACGC 2 cut(s) 97, 182
CsiI ACCWGGT 2 cut(s) 223, 489
Csp6I GTAC 1 cut(s) 859
CviAII CATG 4 cut(s) 268, 539, 662, 777
CviQI GTAC 1 cut(s) 859
DdeI CTNAG 5 cut(s) 17, 297, 565, 1034, 1093
DpnI GATC 5 cut(s) 144, 236, 277, 574, 750
DpnII GATC 5 cut(s) 142, 234, 275, 572, 748
EaeI YGGCCR 1 cut(s) 932
Eam1104I CTCTTC 3 cut(s) 44, 896, 912
EarI CTCTTC 3 cut(s) 44, 896, 912
EciI GGCGGA 2 cut(s) 416, 476
Eco130I CCWWGG 3 cut(s) 661, 935, 1006
Eco147I AGGCCT 1 cut(s) 1181
Eco47I GGWCC 6 cut(s) 301, 506, 551, 591, 943, 1089
Eco57I CTGAAG 1 cut(s) 893
Eco72I CACGTG 1 cut(s) 772
Eco81I CCTNAGG 1 cut(s) 1093
EcoO109I RGGNCCY 2 cut(s) 301, 1089
EcoRII CCWGG 2 cut(s) 223, 489
EcoT14I CCWWGG 3 cut(s) 661, 935, 1006
ErhI CCWWGG 3 cut(s) 661, 935, 1006
Esp3I CGTCTC 1 cut(s) 349
FaeI CATG 4 cut(s) 271, 542, 665, 780
FaqI GGGAC 5 cut(s) 537, 590, 604, 702, 1102
FatI CATG 4 cut(s) 267, 538, 661, 776
FblI GTMKAC 1 cut(s) 1163
Fnu4HI GCNGC 3 cut(s) 411, 471, 932
FokI GGATG 3 cut(s) 404, 825, 989
Fsp4HI GCNGC 3 cut(s) 411, 471, 932
FspBI CTAG 3 cut(s) 306, 639, 720
GluI GCNGC 3 cut(s) 411, 471, 932
HaeIII GGCC 3 cut(s) 818, 934, 1181
HgaI GACGC 2 cut(s) 97, 182
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 4 cut(s) 271, 542, 665, 780
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 830
HpaI GTTAAC 1 cut(s) 487
HphI GGTGA 2 cut(s) 51, 860
Hpy166II GTNNAC 2 cut(s) 487, 1164
Hpy188I TCNGA 2 cut(s) 841, 912
Hpy188III TCNNGA 6 cut(s) 131, 539, 615, 639, 1042, 1144
Hpy8I GTNNAC 2 cut(s) 487, 1164
HpyAV CCTTC 3 cut(s) 445, 475, 934
HpyCH4III ACNGT 5 cut(s) 75, 128, 216, 375, 422
HpyCH4IV ACGT 3 cut(s) 384, 771, 1106
HpyF10VI GCNNNNNNNGC 8 cut(s) 290, 407, 467, 716, 752, 815, 931, 1076
HpyF3I CTNAG 5 cut(s) 17, 297, 565, 1034, 1093
HpySE526I ACGT 3 cut(s) 384, 771, 1106
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 4 cut(s) 271, 542, 665, 780
Kpn2I TCCGGA 1 cut(s) 614
KspAI GTTAAC 1 cut(s) 487
Kzo9I GATC 5 cut(s) 142, 234, 275, 572, 748
LmnI GCTCC 3 cut(s) 214, 425, 707
LweI GCATC 5 cut(s) 185, 891, 912, 1047, 1110
MabI ACCWGGT 2 cut(s) 223, 489
MaeI CTAG 3 cut(s) 306, 639, 720
MaeII ACGT 3 cut(s) 384, 771, 1106
MaeIII GTNAC 5 cut(s) 69, 90, 325, 1107, 1123
MalI GATC 5 cut(s) 144, 236, 277, 574, 750
MboI GATC 5 cut(s) 142, 234, 275, 572, 748
MboII GAAGA 4 cut(s) 31, 72, 883, 899
MflI RGATCY 2 cut(s) 275, 748
MluCI AATT 2 cut(s) 634, 782
MlyI GAGTC 2 cut(s) 612, 819
MmeI TCCRAC 2 cut(s) 212, 967
MroI TCCGGA 1 cut(s) 614
MseI TTAA 7 cut(s) 147, 249, 336, 396, 486, 561, 584
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 549
MspR9I CCNGG 5 cut(s) 225, 491, 510, 589, 600
MvaI CCWGG 2 cut(s) 225, 491
MwoI GCNNNNNNNGC 8 cut(s) 290, 407, 467, 716, 752, 815, 931, 1076
NciI CCSGG 3 cut(s) 510, 589, 600
NcoI CCATGG 1 cut(s) 661
NdeII GATC 5 cut(s) 142, 234, 275, 572, 748
NlaIII CATG 4 cut(s) 271, 542, 665, 780
NlaIV GGNNCC 7 cut(s) 303, 363, 456, 553, 592, 628, 1090
NmuCI GTSAC 3 cut(s) 69, 90, 325
PagI TCATGA 1 cut(s) 538
PceI AGGCCT 1 cut(s) 1181
PfoI TCCNGGA 1 cut(s) 508
PkrI GCNGC 3 cut(s) 412, 472, 933
PleI GAGTC 2 cut(s) 611, 819
PmaCI CACGTG 1 cut(s) 772
PmlI CACGTG 1 cut(s) 772
PpsI GAGTC 2 cut(s) 611, 819
Ppu21I YACGTR 1 cut(s) 772
PpuMI RGGWCCY 2 cut(s) 301, 1089
Psp5II RGGWCCY 2 cut(s) 301, 1089
Psp6I CCWGG 2 cut(s) 223, 489
PspCI CACGTG 1 cut(s) 772
PspGI CCWGG 2 cut(s) 223, 489
PspN4I GGNNCC 7 cut(s) 303, 363, 456, 553, 592, 628, 1090
PspPI GGNCC 7 cut(s) 301, 506, 551, 591, 816, 943, 1089
PspPPI RGGWCCY 2 cut(s) 301, 1089
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 2 cut(s) 275, 748
RsaI GTAC 1 cut(s) 860
RsaNI GTAC 1 cut(s) 859
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 7 cut(s) 147, 249, 336, 396, 486, 561, 584
SatI GCNGC 3 cut(s) 411, 471, 932
Sau3AI GATC 5 cut(s) 142, 234, 275, 572, 748
Sau96I GGNCC 7 cut(s) 301, 506, 551, 591, 816, 943, 1089
SchI GAGTC 2 cut(s) 612, 819
ScrFI CCNGG 5 cut(s) 225, 491, 510, 589, 600
SexAI ACCWGGT 2 cut(s) 223, 489
SfaNI GCATC 5 cut(s) 185, 891, 912, 1047, 1110
SfcI CTRYAG 1 cut(s) 897
SgrAI CRCCGGYG 1 cut(s) 311
SinI GGWCC 6 cut(s) 301, 506, 551, 591, 943, 1089
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 4 cut(s) 279, 827, 1142, 1175
SmoI CTYRAG 4 cut(s) 279, 827, 1142, 1175
Sse9I AATT 2 cut(s) 634, 782
SseBI AGGCCT 1 cut(s) 1181
SsiI CCGC 6 cut(s) 401, 410, 461, 470, 549, 931
SspI AATATT 2 cut(s) 669, 970
SspMI CTAG 3 cut(s) 306, 639, 720
StuI AGGCCT 1 cut(s) 1181
StyD4I CCNGG 5 cut(s) 223, 489, 508, 587, 598
StyI CCWWGG 3 cut(s) 661, 935, 1006
TaaI ACNGT 5 cut(s) 75, 128, 216, 375, 422
TaiI ACGT 3 cut(s) 387, 774, 1109
TaqI TCGA 3 cut(s) 132, 368, 579
TasI AATT 2 cut(s) 634, 782
TatI WGTACW 1 cut(s) 858
TauI GCSGC 3 cut(s) 413, 473, 934
Tru1I TTAA 7 cut(s) 147, 249, 336, 396, 486, 561, 584
Tru9I TTAA 7 cut(s) 147, 249, 336, 396, 486, 561, 584
TscAI CASTG 3 cut(s) 131, 573, 684
TseFI GTSAC 3 cut(s) 69, 90, 325
Tsp45I GTSAC 3 cut(s) 69, 90, 325
TspGWI ACGGA 2 cut(s) 313, 996
TspRI CASTG 3 cut(s) 131, 573, 684
VpaK11BI GGWCC 6 cut(s) 301, 506, 551, 591, 943, 1089
XbaI TCTAGA 1 cut(s) 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 983
XmiI GTMKAC 1 cut(s) 1163
XspI CTAG 3 cut(s) 306, 639, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.