FvH4_2g18000

Auxin-induced in root cultures protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007761
Physical Location & Seq
Reverse (-)
15420318 .. 15422321
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18000.t1

Sequence Viewer

Length: 1167 bp
ATGGCTTCTTCTTCTTCATCATCTTCTGTTGCTAATTACCAGAACATTGCCACGCTAATCTCACTGACTGTTATTCTCCTGATCTCACCCGCGCATTCCCTCACCTGCACCTCCCAGTTCTTCTCCAACAAAAAGCTCTACTCACAATGCGCCGACCTCCCCACCCTCAGCTCCTACCTCCACTGGTCCTACGACACCGCCAACTCCACCCTCGCCGTCGCCTTCGTCGCGCCGCCGGCCAAGCCCGCCGGATGGATCGCCTGGGCCATCAACCCCACCGGCACCGGCATGGAGGGCGCGCAAACGCTCGTCGCTTACAAAACCGCCTCTGGCGCCATGGCTGTCAAGACCTTCAACATCAGTGGTTACACCGGCGATTCCATCGTCCCCGGAGAACTTGCGTTCGAGGTCTGGGACACGGCCGCGGAGGCCTCAGGTGACGCGTTCAGGTTGTTTGCGAAGATGAAAGTGAATACTGGGCAGGTGAACCATGTCTGGCAGGTCGGGCCGTCGGTTTCGAATGCTGGGTTTCCGGCGAAGCATGCTTTTGAGGAAGGGAATCTTCAGGCCAAAGGGACTCTCACCGTGACCGGAACTAATACCGGTGTCGGCGCCGCCACCGGAGCCGATCCCAAGATGAAGAACCGGAATATTCATGGAATTCTGAATGCTGTGAGTTGGGGATTTTTGTTTCCATTGGGGATGATCATCGCAAGGTACATGAGGGTTTTTCCGTCTGCGGATCCTGCATGGTTTTATCTTCATGTATCCTGCCAATTATCTGCTTATGCCATCGGTGTCGCCGGCTGGGCCACCGGACTGAAGCTTGGAAGGGGTGAATACATGAACCACCGCAACATCGGAATTACGCTCTTCGCCTTTGCAACTGTGCAGATGTTTGCATTGTTCTTGAGACCTGCTAAGGATCACAAGTACAGGCTCTTCTGGAACATTTACCACCACAGCATCGGATATGCGATTCTCATCCTTAGCATTGTGAATGTGTTCAAAGGCTTAGACATACTGAATCCTGCTAAGCAATGGAAAACGACTTACATAATAATCCTCGCTGTGTTGGGTGGGATCGCCGTACTCTTGGAAGCAGTCACTTGGATTGTTGTACTGAAGAGAAGGTCAAGTGAGTCCACCAAGCCATACGACGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

389

Amino Acids

41.92

Weight (kDa)

9.4

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 97 - 195 1.9e-25 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 113, 472
Acc36I ACCTGC 4 cut(s) 113, 472, 490, 925
AccB1I GGYRCC 3 cut(s) 281, 332, 611
AccII CGCG 5 cut(s) 92, 230, 299, 425, 443
AclWI GGATC 6 cut(s) 263, 623, 737, 750, 933, 1091
AcoI YGGCCR 2 cut(s) 237, 420
AcsI RAATTY 1 cut(s) 660
AcuI CTGAAG 3 cut(s) 548, 842, 1145
AcyI GRCGYC 2 cut(s) 333, 612
AfaI GTAC 4 cut(s) 719, 935, 1092, 1122
AfiI CCNNNNNNNGG 2 cut(s) 252, 1160
AflIII ACRYGT 1 cut(s) 441
AgeI ACCGGT 1 cut(s) 602
AgsI TTSAA 2 cut(s) 355, 1009
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 3 cut(s) 136, 171, 826
AluI AGCT 3 cut(s) 136, 171, 826
Alw26I GTCTC 1 cut(s) 907
AlwI GGATC 6 cut(s) 263, 623, 737, 750, 933, 1091
AoxI GGCC 7 cut(s) 237, 264, 420, 429, 506, 567, 810
ApoI RAATTY 1 cut(s) 660
AsiGI ACCGGT 1 cut(s) 602
Asp700I GAANNNNTTC 1 cut(s) 1004
AspLEI GCGC 7 cut(s) 94, 152, 232, 299, 301, 335, 614
AspS9I GGNCC 4 cut(s) 186, 264, 506, 810
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 6 cut(s) 78, 94, 449, 496, 574, 848
AsuII TTCGAA 1 cut(s) 518
AvaII GGWCC 1 cut(s) 186
AxyI CCTNAGG 1 cut(s) 433
BamHI GGATCC 1 cut(s) 742
BanI GGYRCC 3 cut(s) 281, 332, 611
BarI GAAGNNNNNNTAC 2 cut(s) 926, 958
BbvCI CCTCAGC 1 cut(s) 167
BccI CCATC 4 cut(s) 246, 275, 389, 800
BceAI ACGGC 4 cut(s) 200, 435, 493, 1073
BciT130I CCWGG 1 cut(s) 262
BciVI GTATCC 1 cut(s) 778
BclI TGATCA 1 cut(s) 705
BcnI CCSGG 1 cut(s) 390
BcoDI GTCTC 1 cut(s) 907
BfoI RGCGCY 2 cut(s) 336, 615
BfuAI ACCTGC 4 cut(s) 113, 472, 490, 925
BfuI GTATCC 1 cut(s) 778
BglI GCCNNNNNGGC 2 cut(s) 428, 809
BisI GCNGC 3 cut(s) 233, 423, 615
BlpI GCTNAGC 1 cut(s) 1035
BlsI GCNGC 3 cut(s) 234, 424, 616
Bme1390I CCNGG 2 cut(s) 262, 390
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 4 cut(s) 186, 264, 506, 810
BmiI GGNNCC 5 cut(s) 283, 334, 613, 625, 744
BmrFI CCNGG 2 cut(s) 262, 390
BmrI ACTGGG 2 cut(s) 109, 486
BmsI GCATC 1 cut(s) 975
BmuI ACTGGG 2 cut(s) 109, 486
Bpu10I CCTNAGC 3 cut(s) 167, 921, 989
Bpu1102I GCTNAGC 1 cut(s) 1035
Bpu14I TTCGAA 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 931
BpuMI CCSGG 1 cut(s) 390
BsaBI GATNNNNATC 2 cut(s) 707, 983
BsaHI GRCGYC 2 cut(s) 333, 612
BsaI GGTCTC 1 cut(s) 907
BsaJI CCNNGG 4 cut(s) 261, 336, 388, 423
BsaWI WCCGGW 5 cut(s) 590, 602, 620, 645, 815
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 1160
Bse118I RCCGGY 6 cut(s) 235, 278, 284, 371, 602, 803
Bse1I ACTGG 3 cut(s) 115, 188, 481
Bse21I CCTNAGG 1 cut(s) 433
Bse3DI GCAATG 2 cut(s) 45, 1046
Bse8I GATNNNNATC 2 cut(s) 707, 983
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 4 cut(s) 261, 336, 388, 423
BseGI GGATG 3 cut(s) 257, 708, 984
BseJI GATNNNNATC 2 cut(s) 707, 983
BseLI CCNNNNNNNGG 2 cut(s) 252, 1160
BseMI GCAATG 2 cut(s) 45, 1046
BseMII CTCAG 2 cut(s) 181, 447
BseNI ACTGG 3 cut(s) 115, 188, 481
BsePI GCGCGC 1 cut(s) 297
BseX3I CGGCCG 1 cut(s) 420
BseYI CCCAGC 2 cut(s) 524, 807
BsgI GTGCAG 2 cut(s) 91, 911
Bsh1236I CGCG 5 cut(s) 92, 230, 299, 425, 443
Bsh1285I CGRYCG 1 cut(s) 423
BshFI GGCC 7 cut(s) 239, 266, 422, 431, 508, 569, 812
BshNI GGYRCC 3 cut(s) 281, 332, 611
BshTI ACCGGT 1 cut(s) 602
BsiEI CGRYCG 1 cut(s) 423
BslFI GGGAC 3 cut(s) 371, 428, 589
BslI CCNNNNNNNGG 2 cut(s) 252, 1160
BsmAI GTCTC 1 cut(s) 907
BsmFI GGGAC 3 cut(s) 371, 428, 589
BsmI GAATGC 3 cut(s) 94, 526, 673
BsnI GGCC 7 cut(s) 239, 266, 422, 431, 508, 569, 812
Bso31I GGTCTC 1 cut(s) 907
Bsp119I TTCGAA 1 cut(s) 518
Bsp143I GATC 7 cut(s) 81, 255, 628, 705, 742, 925, 1083
Bsp1720I GCTNAGC 1 cut(s) 1035
Bsp19I CCATGG 1 cut(s) 336
BspANI GGCC 7 cut(s) 239, 266, 422, 431, 508, 569, 812
BspCNI CTCAG 2 cut(s) 180, 446
BspFNI CGCG 5 cut(s) 92, 230, 299, 425, 443
BspLI GGNNCC 5 cut(s) 283, 334, 613, 625, 744
BspMI ACCTGC 4 cut(s) 113, 472, 490, 925
BspPI GGATC 6 cut(s) 263, 623, 737, 750, 933, 1091
BspQI GCTCTTC 2 cut(s) 878, 947
BspT104I TTCGAA 1 cut(s) 518
BspT107I GGYRCC 3 cut(s) 281, 332, 611
BspTNI GGTCTC 1 cut(s) 907
BsrDI GCAATG 2 cut(s) 45, 1046
BsrFI RCCGGY 6 cut(s) 235, 278, 284, 371, 602, 803
BsrI ACTGG 3 cut(s) 115, 188, 481
BssAI RCCGGY 6 cut(s) 235, 278, 284, 371, 602, 803
BssECI CCNNGG 4 cut(s) 261, 336, 388, 423
BssHII GCGCGC 1 cut(s) 297
BssMI GATC 7 cut(s) 81, 255, 628, 705, 742, 925, 1083
BssNI GRCGYC 2 cut(s) 333, 612
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 3 cut(s) 70, 586, 889
Bst6I CTCTTC 3 cut(s) 878, 947, 1121
BstACI GRCGYC 2 cut(s) 333, 612
BstBI TTCGAA 1 cut(s) 518
BstC8I GCNNGC 5 cut(s) 237, 246, 299, 543, 805
BstDEI CTNAG 6 cut(s) 167, 433, 921, 989, 1015, 1035
BstDSI CCRYGG 2 cut(s) 336, 423
BstF5I GGATG 3 cut(s) 257, 708, 984
BstFNI CGCG 5 cut(s) 92, 230, 299, 425, 443
BstH2I RGCGCY 2 cut(s) 336, 615
BstHHI GCGC 7 cut(s) 94, 152, 232, 299, 301, 335, 614
BstKTI GATC 7 cut(s) 84, 258, 631, 708, 745, 928, 1086
BstMAI GTCTC 1 cut(s) 907
BstMBI GATC 7 cut(s) 81, 255, 628, 705, 742, 925, 1083
BstMCI CGRYCG 1 cut(s) 423
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 2 cut(s) 260, 388
BstUI CGCG 5 cut(s) 92, 230, 299, 425, 443
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
BstZI CGGCCG 1 cut(s) 420
Bsu36I CCTNAGG 1 cut(s) 433
BsuI GTATCC 1 cut(s) 778
BsuRI GGCC 7 cut(s) 239, 266, 422, 431, 508, 569, 812
BtgI CCRYGG 2 cut(s) 336, 423
BtgZI GCGATG 1 cut(s) 694
BtsCI GGATG 3 cut(s) 257, 708, 984
BtsIMutI CAGTG 3 cut(s) 62, 181, 367
BveI ACCTGC 4 cut(s) 113, 472, 490, 925
Cac8I GCNNGC 5 cut(s) 237, 246, 299, 543, 805
CfoI GCGC 7 cut(s) 94, 152, 232, 299, 301, 335, 614
Cfr10I RCCGGY 6 cut(s) 235, 278, 284, 371, 602, 803
Cfr13I GGNCC 4 cut(s) 186, 264, 506, 810
Cfr42I CCGCGG 1 cut(s) 426
CseI GACGC 1 cut(s) 449
Csp6I GTAC 4 cut(s) 718, 934, 1091, 1121
CspAI ACCGGT 1 cut(s) 602
CspCI CAANNNNNGTGG 2 cut(s) 343, 378
CviAII CATG 9 cut(s) 289, 337, 491, 542, 656, 721, 750, 764, 844
CviQI GTAC 4 cut(s) 718, 934, 1091, 1121
DdeI CTNAG 6 cut(s) 167, 433, 921, 989, 1015, 1035
DinI GGCGCC 2 cut(s) 334, 613
DpnI GATC 7 cut(s) 83, 257, 630, 707, 744, 927, 1085
DpnII GATC 7 cut(s) 81, 255, 628, 705, 742, 925, 1083
EaeI YGGCCR 2 cut(s) 237, 420
EagI CGGCCG 1 cut(s) 420
Eam1104I CTCTTC 3 cut(s) 878, 947, 1121
EarI CTCTTC 3 cut(s) 878, 947, 1121
EclXI CGGCCG 1 cut(s) 420
Eco130I CCWWGG 1 cut(s) 336
Eco147I AGGCCT 1 cut(s) 431
Eco31I GGTCTC 1 cut(s) 907
Eco47I GGWCC 1 cut(s) 186
Eco52I CGGCCG 1 cut(s) 420
Eco57I CTGAAG 3 cut(s) 548, 842, 1145
Eco81I CCTNAGG 1 cut(s) 433
EcoRI GAATTC 1 cut(s) 660
EcoRII CCWGG 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 336
EgeI GGCGCC 2 cut(s) 334, 613
EheI GGCGCC 2 cut(s) 334, 613
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 9 cut(s) 292, 340, 494, 545, 659, 724, 753, 767, 847
FalI AAGNNNNNCTT 2 cut(s) 546, 578
FaqI GGGAC 3 cut(s) 371, 428, 589
FatI CATG 9 cut(s) 288, 336, 490, 541, 655, 720, 749, 763, 843
FauI CCCGC 2 cut(s) 97, 253
FbaI TGATCA 1 cut(s) 705
Fnu4HI GCNGC 3 cut(s) 233, 423, 615
FokI GGATG 3 cut(s) 264, 715, 971
Fsp4HI GCNGC 3 cut(s) 233, 423, 615
GlaI GCGC 7 cut(s) 93, 151, 231, 298, 300, 334, 613
GluI GCNGC 3 cut(s) 233, 423, 615
GsaI CCCAGC 2 cut(s) 528, 811
HaeII RGCGCY 2 cut(s) 336, 615
HaeIII GGCC 7 cut(s) 239, 266, 422, 431, 508, 569, 812
HgaI GACGC 1 cut(s) 449
HhaI GCGC 7 cut(s) 94, 152, 232, 299, 301, 335, 614
Hin1I GRCGYC 2 cut(s) 333, 612
Hin1II CATG 9 cut(s) 292, 340, 494, 545, 659, 724, 753, 767, 847
Hin6I GCGC 7 cut(s) 92, 150, 230, 297, 299, 333, 612
HinP1I GCGC 7 cut(s) 92, 150, 230, 297, 299, 333, 612
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 6 cut(s) 377, 559, 577, 979, 1027, 1142
HphI GGTGA 6 cut(s) 78, 94, 449, 496, 574, 848
Hpy166II GTNNAC 2 cut(s) 487, 1146
Hpy188I TCNGA 3 cut(s) 666, 863, 971
Hpy188III TCNNGA 4 cut(s) 79, 346, 910, 946
Hpy8I GTNNAC 2 cut(s) 487, 1146
Hpy99I CGWCG 5 cut(s) 221, 230, 314, 514, 1163
HpyAV CCTTC 5 cut(s) 232, 361, 548, 825, 1125
HpyCH4III ACNGT 3 cut(s) 70, 586, 889
HpyCH4V TGCA 5 cut(s) 108, 749, 884, 892, 902
HpyF3I CTNAG 6 cut(s) 167, 433, 921, 989, 1015, 1035
Hsp92I GRCGYC 2 cut(s) 333, 612
Hsp92II CATG 9 cut(s) 292, 340, 494, 545, 659, 724, 753, 767, 847
HspAI GCGC 7 cut(s) 92, 150, 230, 297, 299, 333, 612
KasI GGCGCC 2 cut(s) 332, 611
KroI GCCGGC 2 cut(s) 235, 803
KroNI GCCGGC 2 cut(s) 237, 805
Ksp22I TGATCA 1 cut(s) 705
KspI CCGCGG 1 cut(s) 426
Kzo9I GATC 7 cut(s) 81, 255, 628, 705, 742, 925, 1083
LguI GCTCTTC 2 cut(s) 878, 947
LmnI GCTCC 2 cut(s) 176, 623
LweI GCATC 1 cut(s) 975
MaeIII GTNAC 4 cut(s) 365, 437, 586, 1105
MalI GATC 7 cut(s) 83, 257, 630, 707, 744, 927, 1085
MboI GATC 7 cut(s) 81, 255, 628, 705, 742, 925, 1083
MflI RGATCY 1 cut(s) 742
MluCI AATT 4 cut(s) 34, 660, 776, 864
MluI ACGCGT 1 cut(s) 441
Mly113I GGCGCC 2 cut(s) 333, 612
MlyI GAGTC 2 cut(s) 571, 1151
MmeI TCCRAC 1 cut(s) 150
MroNI GCCGGC 2 cut(s) 235, 803
MroXI GAANNNNTTC 1 cut(s) 1004
MslI CAYNNNNRTG 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 425
MspR9I CCNGG 2 cut(s) 262, 390
Mva1269I GAATGC 3 cut(s) 94, 526, 673
MvaI CCWGG 1 cut(s) 262
MvnI CGCG 5 cut(s) 92, 230, 299, 425, 443
NaeI GCCGGC 2 cut(s) 237, 805
NarI GGCGCC 2 cut(s) 333, 612
NciI CCSGG 1 cut(s) 390
NcoI CCATGG 1 cut(s) 336
NdeII GATC 7 cut(s) 81, 255, 628, 705, 742, 925, 1083
NgoMIV GCCGGC 2 cut(s) 235, 803
NlaIII CATG 9 cut(s) 292, 340, 494, 545, 659, 724, 753, 767, 847
NlaIV GGNNCC 5 cut(s) 283, 334, 613, 625, 744
NmuCI GTSAC 3 cut(s) 437, 586, 1105
NspI RCATGY 1 cut(s) 545
NspV TTCGAA 1 cut(s) 518
PaeI GCATGC 1 cut(s) 545
PaqCI CACCTGC 2 cut(s) 113, 472
PauI GCGCGC 1 cut(s) 297
PceI AGGCCT 1 cut(s) 431
PciSI GCTCTTC 2 cut(s) 878, 947
PctI GAATGC 3 cut(s) 94, 526, 673
PdiI GCCGGC 2 cut(s) 237, 805
PdmI GAANNNNTTC 1 cut(s) 1004
PfeI GAWTC 4 cut(s) 377, 559, 979, 1027
PinAI ACCGGT 1 cut(s) 602
PkrI GCNGC 3 cut(s) 234, 424, 616
PleI GAGTC 2 cut(s) 571, 1150
PluTI GGCGCC 2 cut(s) 336, 615
PpsI GAGTC 2 cut(s) 571, 1150
Psp6I CCWGG 1 cut(s) 260
PspFI CCCAGC 2 cut(s) 524, 807
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 5 cut(s) 283, 334, 613, 625, 744
PspPI GGNCC 4 cut(s) 186, 264, 506, 810
PsuI RGATCY 1 cut(s) 742
PteI GCGCGC 1 cut(s) 297
RsaI GTAC 4 cut(s) 719, 935, 1092, 1122
RsaNI GTAC 4 cut(s) 718, 934, 1091, 1121
RseI CAYNNNNRTG 1 cut(s) 287
SacII CCGCGG 1 cut(s) 426
SapI GCTCTTC 2 cut(s) 878, 947
SatI GCNGC 3 cut(s) 233, 423, 615
Sau3AI GATC 7 cut(s) 81, 255, 628, 705, 742, 925, 1083
Sau96I GGNCC 4 cut(s) 186, 264, 506, 810
SchI GAGTC 2 cut(s) 571, 1151
ScrFI CCNGG 2 cut(s) 262, 390
SfaNI GCATC 1 cut(s) 975
SfiI GGCCNNNNNGGCC 1 cut(s) 428
SfoI GGCGCC 2 cut(s) 334, 613
Sfr303I CCGCGG 1 cut(s) 426
SfuI TTCGAA 1 cut(s) 518
SgrAI CRCCGGYG 1 cut(s) 371
SgrBI CCGCGG 1 cut(s) 426
SinI GGWCC 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 910
SmoI CTYRAG 1 cut(s) 910
SphI GCATGC 1 cut(s) 545
Sse9I AATT 4 cut(s) 34, 660, 776, 864
SseBI AGGCCT 1 cut(s) 431
SspDI GGCGCC 2 cut(s) 332, 611
SspI AATATT 1 cut(s) 652
StuI AGGCCT 1 cut(s) 431
StyD4I CCNGG 2 cut(s) 260, 388
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 3 cut(s) 70, 586, 889
TaqI TCGA 2 cut(s) 405, 518
TasI AATT 4 cut(s) 34, 660, 776, 864
TatI WGTACW 2 cut(s) 933, 1120
TauI GCSGC 3 cut(s) 235, 425, 617
TfiI GAWTC 4 cut(s) 377, 559, 979, 1027
TscAI CASTG 3 cut(s) 69, 188, 367
TseFI GTSAC 3 cut(s) 437, 586, 1105
Tsp45I GTSAC 3 cut(s) 437, 586, 1105
TspDTI ATGAA 6 cut(s) 6, 479, 644, 653, 752, 860
TspGWI ACGGA 1 cut(s) 723
TspRI CASTG 3 cut(s) 69, 188, 367
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 1 cut(s) 660
XceI RCATGY 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.