Rorug06G0153200

Auxin-induced in root cultures protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
22024795 .. 22026509
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0153200.1

Sequence Viewer

Length: 1230 bp
ATGGAGAAGAGAAAGCTGAAATACAAAGATGAAGCGATATTATTGCAGCACCCACTTGTGCTTTTCCTTATTCTGGTTTTGGGCTTTGTCATAATGGATCCTCTACAAGTAGGCCCGCTAGGCGGCCATGAATTCAAGCCCGTCAAGCACAGCATTGCGCCATACAAGAAAGTCATGGAGAGGTGGCCGAGGGACAATCTGAGCCGGTTGGGACTCGGGAAGTTGGAGTTCGAGGACGAAGTTTTTGGGCCTGAATCTTTGGAGTTTGATGCTTTGGGCCTTGGGCCTTACACCGGGTTAGCCGATGGACGCATCGTGAGATGGATGGGCCCGGATGTGGGTTGGGAGACATTTGCGCTTGTAACAGCAAATTGGTCAGAGCAGGTTTGTGCAAAAGGCAATGAGTCCACCACATACAAGCAATGGAAGCATGAAAAAAGGTGTGGTCGTCCACTAGGGTTAAGATTTGACAAAGTGACTGGAAATCTGTACATTGCGGACGCTTATTATGGACTTCTAGCTGTTGGACCTGAAGGAGGACTAGCAACTCCTTTGTCGACTCAAGACGTAGAAGGCAACCCCATACTCTTTGCAAATGACCTTGATATCCACACCAATGGTTCCATCTTCTTCACAGATACTAGCACGAGATACAACAGAGTGGATCATTTCCTTATACTATTGGAAGGAGAAGCCACCGGTAGGCTCCTGAGATATGACCCTCCCACTAAAACAACTCATGTTGTCTTGCATGGTTTGGCCTTTCCAAATGGCTTACAATTTTCTCAGGACCAAACCTTCCTTCTCTTCACTGAGACCACCAACTGCAGGCTCATGAAATATTGGTTAGAAGGTCCAAAATCTGGAACAGTGGAACTTGTTGCGGACCTTCCAGGATTTCCAGACAATGTAAGAATAAATGAGAAAGGGCAATTCTGGGTAGCAATAGATTGTTGCAGGACTCCAGCACAGGAGGTCCTCTCTAATAATCCATGGTTAAGGAATGTCTACTTTCGCTTGCCAATCCGGATGACCTACTTGGCAAGAATTATGGGAATGAAAATGTACACACTGATCTCGCTATTCAATGACAAGGGAGAGATTTTGGAAGTTCTTGAAGACCGAAAGGGTGAGGTTATGAAACTTGTGAGTGAAGTTAGAGAATCAAAGGGCAAACTCTGGATTGGAACTGTGGCTCATAACCACATTGCTACCGTCCCTTACCCTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

409

Amino Acids

46.34

Weight (kDa)

6.39

Isoelectric Point (pI)

27.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SGL PF08450 135 - 316 5.1e-16 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 199 - 285 4.1e-29 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 373
AccB7I CCANNNNNTGG 1 cut(s) 863
AccI GTMKAC 2 cut(s) 557, 1008
AccIII TCCGGA 1 cut(s) 1026
AciI CCGC 4 cut(s) 116, 123, 497, 884
AclWI GGATC 3 cut(s) 92, 105, 672
AcoI YGGCCR 2 cut(s) 124, 185
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 552
AfaI GTAC 2 cut(s) 491, 1067
AfiI CCNNNNNNNGG 9 cut(s) 73, 122, 293, 337, 338, 536, 702, 828, 863
AgeI ACCGGT 1 cut(s) 698
AgsI TTSAA 3 cut(s) 136, 1087, 1118
AjnI CCWGG 1 cut(s) 892
AjuI GAANNNNNNNTTGG 2 cut(s) 786, 818
AluBI AGCT 2 cut(s) 16, 521
AluI AGCT 2 cut(s) 16, 521
Alw26I GTCTC 2 cut(s) 341, 809
AlwI GGATC 3 cut(s) 92, 105, 672
Ama87I CYCGRG 1 cut(s) 215
Aor13HI TCCGGA 1 cut(s) 1026
AoxI GGCC 8 cut(s) 112, 124, 185, 248, 277, 284, 328, 759
ApaI GGGCCC 1 cut(s) 332
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 131
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AsiGI ACCGGT 1 cut(s) 698
AspLEI GCGC 2 cut(s) 160, 358
AsuC2I CCSGG 2 cut(s) 295, 332
AsuHPI GGTGA 1 cut(s) 1142
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 5 cut(s) 527, 790, 854, 886, 976
BaeGI GKGCMC 1 cut(s) 332
BamHI GGATCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 332
BauI CACGAG 1 cut(s) 646
BbsI GAAGAC 1 cut(s) 1125
BbvI GCAGC 1 cut(s) 58
BccI CCATC 4 cut(s) 299, 315, 319, 632
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BciT130I CCWGG 1 cut(s) 894
BcnI CCSGG 2 cut(s) 295, 332
BcoDI GTCTC 2 cut(s) 341, 809
BfaI CTAG 5 cut(s) 119, 455, 518, 542, 642
BfmI CTRYAG 1 cut(s) 826
BfuAI ACCTGC 1 cut(s) 373
BglI GCCNNNNNGGC 1 cut(s) 120
BisI GCNGC 2 cut(s) 47, 124
BlsI GCNGC 2 cut(s) 48, 125
Bme1390I CCNGG 3 cut(s) 295, 332, 894
Bme18I GGWCC 5 cut(s) 527, 790, 854, 886, 976
BmeT110I CYCGRG 1 cut(s) 215
BmiI GGNNCC 4 cut(s) 99, 330, 622, 707
BmrFI CCNGG 3 cut(s) 295, 332, 894
BmsI GCATC 2 cut(s) 259, 321
BpiI GAAGAC 1 cut(s) 1125
BplI GAGNNNNNCTC 2 cut(s) 965, 997
BpmI CTGGAG 1 cut(s) 948
BpuEI CTTGAG 1 cut(s) 546
BpuMI CCSGG 2 cut(s) 295, 332
BsaI GGTCTC 1 cut(s) 809
BsaJI CCNNGG 3 cut(s) 188, 280, 992
BsaWI WCCGGW 2 cut(s) 698, 1026
Bsc4I CCNNNNNNNGG 9 cut(s) 73, 122, 293, 337, 338, 536, 702, 828, 863
Bse118I RCCGGY 2 cut(s) 204, 698
Bse1I ACTGG 1 cut(s) 484
Bse3DI GCAATG 5 cut(s) 153, 406, 428, 492, 1206
BseAI TCCGGA 1 cut(s) 1026
BseBI CCWGG 1 cut(s) 894
BseDI CCNNGG 3 cut(s) 188, 280, 992
BseGI GGATG 3 cut(s) 330, 340, 1035
BseLI CCNNNNNNNGG 9 cut(s) 73, 122, 293, 337, 338, 536, 702, 828, 863
BseMI GCAATG 5 cut(s) 153, 406, 428, 492, 1206
BseMII CTCAG 4 cut(s) 191, 701, 800, 804
BseNI ACTGG 1 cut(s) 484
BseSI GKGCMC 1 cut(s) 332
BseXI GCAGC 1 cut(s) 58
BshFI GGCC 8 cut(s) 114, 126, 187, 250, 279, 286, 330, 761
BshTI ACCGGT 1 cut(s) 698
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 5 cut(s) 205, 294, 332, 699, 1027
BslFI GGGAC 3 cut(s) 206, 225, 1202
BslI CCNNNNNNNGG 9 cut(s) 73, 122, 293, 337, 338, 536, 702, 828, 863
BsmAI GTCTC 2 cut(s) 341, 809
BsmFI GGGAC 3 cut(s) 206, 225, 1202
BsnI GGCC 8 cut(s) 114, 126, 187, 250, 279, 286, 330, 761
Bso31I GGTCTC 1 cut(s) 809
BsoBI CYCGRG 1 cut(s) 215
Bsp120I GGGCCC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 332
Bsp13I TCCGGA 1 cut(s) 1026
Bsp1407I TGTACA 2 cut(s) 489, 1065
Bsp143I GATC 3 cut(s) 97, 664, 1074
Bsp19I CCATGG 1 cut(s) 992
BspACI CCGC 4 cut(s) 116, 123, 497, 884
BspANI GGCC 8 cut(s) 114, 126, 187, 250, 279, 286, 330, 761
BspCNI CTCAG 4 cut(s) 192, 702, 799, 805
BspEI TCCGGA 1 cut(s) 1026
BspHI TCATGA 1 cut(s) 834
BspLI GGNNCC 4 cut(s) 99, 330, 622, 707
BspMAI CTGCAG 1 cut(s) 830
BspMI ACCTGC 1 cut(s) 373
BspPI GGATC 3 cut(s) 92, 105, 672
BspTNI GGTCTC 1 cut(s) 809
BsrDI GCAATG 5 cut(s) 153, 406, 428, 492, 1206
BsrFI RCCGGY 2 cut(s) 204, 698
BsrGI TGTACA 2 cut(s) 489, 1065
BsrI ACTGG 1 cut(s) 484
BssAI RCCGGY 2 cut(s) 204, 698
BssECI CCNNGG 3 cut(s) 188, 280, 992
BssMI GATC 3 cut(s) 97, 664, 1074
BssSI CACGAG 1 cut(s) 646
BssT1I CCWWGG 2 cut(s) 280, 992
Bst2BI CACGAG 1 cut(s) 646
Bst2UI CCWGG 1 cut(s) 894
Bst4CI ACNGT 3 cut(s) 871, 1192, 1216
Bst6I CTCTTC 2 cut(s) 2, 812
BstAUI TGTACA 2 cut(s) 489, 1065
BstC8I GCNNGC 3 cut(s) 116, 830, 1019
BstDEI CTNAG 4 cut(s) 200, 710, 786, 813
BstDSI CCRYGG 1 cut(s) 992
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 3 cut(s) 330, 340, 1035
BstHHI GCGC 2 cut(s) 160, 358
BstKTI GATC 3 cut(s) 100, 667, 1077
BstMAI GTCTC 2 cut(s) 341, 809
BstMBI GATC 3 cut(s) 97, 664, 1074
BstMWI GCNNNNNNNGC 3 cut(s) 120, 145, 427
BstNI CCWGG 1 cut(s) 894
BstSCI CCNGG 3 cut(s) 293, 330, 892
BstSFI CTRYAG 1 cut(s) 826
BstSLI GKGCMC 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 1125
BstX2I RGATCY 1 cut(s) 97
BstXI CCANNNNNNTGG 1 cut(s) 617
BstYI RGATCY 1 cut(s) 97
BsuRI GGCC 8 cut(s) 114, 126, 187, 250, 279, 286, 330, 761
BtgI CCRYGG 1 cut(s) 992
BtsCI GGATG 3 cut(s) 330, 340, 1035
BtsIMutI CAGTG 3 cut(s) 810, 876, 1070
BveI ACCTGC 1 cut(s) 373
Cac8I GCNNGC 3 cut(s) 116, 830, 1019
CciI TCATGA 1 cut(s) 834
CfoI GCGC 2 cut(s) 160, 358
Cfr10I RCCGGY 2 cut(s) 204, 698
CseI GACGC 2 cut(s) 318, 509
Csp6I GTAC 2 cut(s) 490, 1066
CspAI ACCGGT 1 cut(s) 698
CviAII CATG 7 cut(s) 128, 175, 431, 740, 752, 835, 993
CviQI GTAC 2 cut(s) 490, 1066
DdeI CTNAG 4 cut(s) 200, 710, 786, 813
DpnI GATC 3 cut(s) 99, 666, 1076
DpnII GATC 3 cut(s) 97, 664, 1074
EaeI YGGCCR 2 cut(s) 124, 185
Eam1104I CTCTTC 2 cut(s) 2, 812
EarI CTCTTC 2 cut(s) 2, 812
Eco130I CCWWGG 2 cut(s) 280, 992
Eco24I GRGCYC 1 cut(s) 332
Eco31I GGTCTC 1 cut(s) 809
Eco32I GATATC 1 cut(s) 607
Eco47I GGWCC 5 cut(s) 527, 790, 854, 886, 976
Eco57I CTGAAG 1 cut(s) 552
Eco88I CYCGRG 1 cut(s) 215
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 976
EcoRI GAATTC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 892
EcoRV GATATC 1 cut(s) 607
EcoT14I CCWWGG 2 cut(s) 280, 992
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 2 cut(s) 280, 992
FaeI CATG 7 cut(s) 131, 178, 434, 743, 755, 838, 996
FaqI GGGAC 3 cut(s) 206, 225, 1202
FatI CATG 7 cut(s) 127, 174, 430, 739, 751, 834, 992
FauI CCCGC 1 cut(s) 123
FblI GTMKAC 2 cut(s) 557, 1008
Fnu4HI GCNGC 2 cut(s) 47, 124
FokI GGATG 3 cut(s) 337, 347, 1042
FriOI GRGCYC 1 cut(s) 332
Fsp4HI GCNGC 2 cut(s) 47, 124
FspBI CTAG 5 cut(s) 119, 455, 518, 542, 642
GlaI GCGC 2 cut(s) 159, 357
GluI GCNGC 2 cut(s) 47, 124
GsuI CTGGAG 1 cut(s) 948
HaeIII GGCC 8 cut(s) 114, 126, 187, 250, 279, 286, 330, 761
HapII CCGG 5 cut(s) 205, 294, 332, 699, 1027
HgaI GACGC 2 cut(s) 318, 509
HhaI GCGC 2 cut(s) 160, 358
Hin1II CATG 7 cut(s) 131, 178, 434, 743, 755, 838, 996
Hin6I GCGC 2 cut(s) 158, 356
HinP1I GCGC 2 cut(s) 158, 356
HincII GTYRAC 1 cut(s) 558
HindII GTYRAC 1 cut(s) 558
HinfI GANTC 6 cut(s) 213, 254, 404, 559, 961, 1163
HpaII CCGG 5 cut(s) 205, 294, 332, 699, 1027
HphI GGTGA 1 cut(s) 1142
Hpy166II GTNNAC 5 cut(s) 408, 452, 558, 1009, 1068
Hpy188I TCNGA 2 cut(s) 201, 379
Hpy8I GTNNAC 5 cut(s) 408, 452, 558, 1009, 1068
HpyAV CCTTC 7 cut(s) 527, 566, 680, 808, 812, 845, 899
HpyCH4III ACNGT 3 cut(s) 871, 1192, 1216
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 6 cut(s) 46, 392, 593, 751, 828, 957
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 145, 427
HpyF3I CTNAG 4 cut(s) 200, 710, 786, 813
HpySE526I ACGT 1 cut(s) 567
Hsp92II CATG 7 cut(s) 131, 178, 434, 743, 755, 838, 996
HspAI GCGC 2 cut(s) 158, 356
Kpn2I TCCGGA 1 cut(s) 1026
Kzo9I GATC 3 cut(s) 97, 664, 1074
LmnI GCTCC 1 cut(s) 711
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 259, 321
MaeI CTAG 5 cut(s) 119, 455, 518, 542, 642
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 2 cut(s) 361, 475
MalI GATC 3 cut(s) 99, 666, 1076
MboI GATC 3 cut(s) 97, 664, 1074
MboII GAAGA 5 cut(s) 19, 619, 622, 799, 1130
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 5 cut(s) 131, 370, 779, 932, 1047
MlyI GAGTC 4 cut(s) 207, 413, 553, 955
MmeI TCCRAC 2 cut(s) 204, 505
MnlI CCTC 9 cut(s) 111, 174, 183, 226, 530, 732, 967, 989, 1126
MroI TCCGGA 1 cut(s) 1026
MseI TTAA 3 cut(s) 461, 998, 1228
MslI CAYNNNNRTG 1 cut(s) 615
MspI CCGG 5 cut(s) 205, 294, 332, 699, 1027
MspR9I CCNGG 3 cut(s) 295, 332, 894
MvaI CCWGG 1 cut(s) 894
MwoI GCNNNNNNNGC 3 cut(s) 120, 145, 427
NciI CCSGG 2 cut(s) 295, 332
NcoI CCATGG 1 cut(s) 992
NdeII GATC 3 cut(s) 97, 664, 1074
NlaIII CATG 7 cut(s) 131, 178, 434, 743, 755, 838, 996
NlaIV GGNNCC 4 cut(s) 99, 330, 622, 707
NmeAIII GCCGAG 1 cut(s) 213
NmuCI GTSAC 1 cut(s) 475
PagI TCATGA 1 cut(s) 834
PfeI GAWTC 2 cut(s) 254, 1163
PflMI CCANNNNNTGG 1 cut(s) 863
PfoI TCCNGGA 1 cut(s) 892
PinAI ACCGGT 1 cut(s) 698
PkrI GCNGC 2 cut(s) 48, 125
PleI GAGTC 4 cut(s) 207, 412, 553, 955
PpsI GAGTC 4 cut(s) 207, 412, 553, 955
PpuMI RGGWCCY 1 cut(s) 976
Psp5II RGGWCCY 1 cut(s) 976
Psp6I CCWGG 1 cut(s) 892
PspGI CCWGG 1 cut(s) 892
PspN4I GGNNCC 4 cut(s) 99, 330, 622, 707
PspOMI GGGCCC 1 cut(s) 328
PspPPI RGGWCCY 1 cut(s) 976
PstI CTGCAG 1 cut(s) 830
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 2 cut(s) 491, 1067
RsaNI GTAC 2 cut(s) 490, 1066
RseI CAYNNNNRTG 1 cut(s) 615
SalI GTCGAC 1 cut(s) 556
SaqAI TTAA 3 cut(s) 461, 998, 1228
SatI GCNGC 2 cut(s) 47, 124
Sau3AI GATC 3 cut(s) 97, 664, 1074
SchI GAGTC 4 cut(s) 207, 413, 553, 955
ScrFI CCNGG 3 cut(s) 295, 332, 894
SduI GDGCHC 1 cut(s) 332
SfaNI GCATC 2 cut(s) 259, 321
SfcI CTRYAG 1 cut(s) 826
SinI GGWCC 5 cut(s) 527, 790, 854, 886, 976
SmiMI CAYNNNNRTG 1 cut(s) 615
SmlI CTYRAG 1 cut(s) 561
SmoI CTYRAG 1 cut(s) 561
Sse9I AATT 5 cut(s) 131, 370, 779, 932, 1047
SsiI CCGC 4 cut(s) 116, 123, 497, 884
SspI AATATT 1 cut(s) 842
SspMI CTAG 5 cut(s) 119, 455, 518, 542, 642
StyD4I CCNGG 3 cut(s) 293, 330, 892
StyI CCWWGG 2 cut(s) 280, 992
TaaI ACNGT 3 cut(s) 871, 1192, 1216
TaiI ACGT 1 cut(s) 570
TaqI TCGA 2 cut(s) 231, 557
TaqII GACCGA 1 cut(s) 1137
TasI AATT 5 cut(s) 131, 370, 779, 932, 1047
TatI WGTACW 2 cut(s) 489, 1065
TauI GCSGC 1 cut(s) 126
TfiI GAWTC 2 cut(s) 254, 1163
Tru1I TTAA 3 cut(s) 461, 998, 1228
Tru9I TTAA 3 cut(s) 461, 998, 1228
TscAI CASTG 3 cut(s) 817, 876, 1077
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 6 cut(s) 45, 144, 447, 851, 1073, 1154
TspRI CASTG 3 cut(s) 817, 876, 1077
Van91I CCANNNNNTGG 1 cut(s) 863
VpaK11BI GGWCC 5 cut(s) 527, 790, 854, 886, 976
XagI CCTNNNNNAGG 1 cut(s) 534
XapI RAATTY 1 cut(s) 131
XmiI GTMKAC 2 cut(s) 557, 1008
XspI CTAG 5 cut(s) 119, 455, 518, 542, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.